Sciurus carolinensis (gray squirrel): 124993142
Help
Entry
124993142 CDS
T08117
Name
(RefSeq) short transient receptor potential channel 1 isoform X1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04360
Axon guidance
ncar04724
Glutamatergic synapse
ncar04726
Serotonergic synapse
ncar04929
GnRH secretion
ncar04972
Pancreatic secretion
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
124993142
09154 Digestive system
04972 Pancreatic secretion
124993142
09156 Nervous system
04724 Glutamatergic synapse
124993142
04726 Serotonergic synapse
124993142
09158 Development and regeneration
04360 Axon guidance
124993142
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ncar04040
]
124993142
Ion channels [BR:
ncar04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
124993142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
LHD_TRPY1
Topo_VI_alpha
MTR4-like_stalk
RIN1
Motif
Other DBs
NCBI-GeneID:
124993142
NCBI-ProteinID:
XP_047420717
LinkDB
All DBs
Position
9:complement(14393483..14474828)
Genome browser
AA seq
810 aa
AA seq
DB search
MGAPPPSPGLPPSWAAMMAALYPSTDLSGVSSSSLPSSPSSSSSPNEVMALKDVREVKEE
NTLNEKLFLLACDKGDYYMVKKILEENSSGDLNINCVDVLGRNAVTITIENENLDILQLL
LDYGCQSADALLVAIDSEVVGAVDILLNHRPKRASRPTIVKLMERIQNPEYSTTMDVAPV
ILAAHRNNYEILTMLLKQDVSLPKPHAVGCECTLCSAKNKKDSLRHSRFRLDIYRCLASP
ALIMLTEEDPILRAFELSADLKELSLVEVEFRNDYEELARQCKMFAKDLLAQARNSRELE
VILNHTSSDEPLDKRGLLEERMNLSRLKLAIKYNQKEFVSQSNCQQFLNTVWFGQMSGYR
RKPTCKKIMTVLTVGIFWPVLSLCYLIAPKSQFGRIIHTPFMKFIIHGASYFTFLLLLNL
YSLVYNEDKKNTMGPALERIDYLLILWIIGMIWSDIKRLWYEGLEDFLEESRNQLSFVMN
SLYLATFALKVVAHNKFHDFADRKDWDAFHPTLVAEGLFAFANVLSYLRLFFMYTTSSIL
GPLQISMGQMLQDFGKFLGMFLLVLFSFTIGLTQLYDKGYTPKEQKDCVGIFCEQQSNDT
FHSFIGTCFALFWYIFSLAHVAIFVTRFSYGEELQSFVGAVIVGTYNVVVVIVLTKLLVA
MLHKSFQLIANHEDKEWKFARAKLWLSYFDDKCTLPPPFNIIPSPKTICYLISSLSKWIC
SHTSKGKVKRQNSLKEWRNLKQKRDENYQKVMCCLVHRYLTSMRQKMQSTDQATVENLNE
LRQDLSKFRNEIRDLLGFRTSKYAMFYPRN
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgggggccccgcccccgtctcctggcctgcccccgtcgtgggccgcgatgatggcggcc
ctgtacccgagcacggacctctcgggcgtctcctcctcctccctgccttcctccccatct
tcctcttcgtcgccgaacgaagtgatggcgctgaaggatgtgcgggaggtgaaggaggag
aacaccctgaacgagaagcttttcttgctggcgtgcgacaagggtgactattatatggtt
aaaaagattttggaggaaaacagttcaggtgacttgaacataaattgcgtagatgtgctt
gggagaaatgctgttaccataactattgaaaacgaaaacttggatatactgcagcttctt
ttggactacggttgtcagtccgcagatgcacttttggtggcaatcgactctgaagtagtg
ggagctgttgatatactacttaatcatcgaccaaaacgagcatcaagaccaactatagta
aaactaatggaacgaatccagaatcctgagtattccactactatggatgtcgcacctgtc
attttagctgctcatcgtaacaactatgagattcttacaatgctcctaaaacaggatgtt
tctctacccaagccccatgcagttggctgtgaatgtacattgtgttctgcaaaaaacaaa
aaagacagcctccgacattccaggtttcgtcttgatatttatcgatgcttggccagtcca
gctctaataatgttaacagaggaggatccaattctaagagcatttgaacttagtgctgat
ttaaaagaactaagccttgtggaggtggaatttaggaatgattatgaggaactagcccgt
cagtgcaaaatgtttgctaaagatttgcttgcacaagcccggaattcacgtgagttggaa
gttatcctaaaccacacatctagtgatgaacctcttgacaaacggggactactagaagaa
agaatgaatttaagtcgtctaaaacttgcaatcaaatataaccaaaaggagtttgtctcc
cagtctaactgccaacagttcctgaacactgtttggtttggacagatgtcaggttaccga
cgtaaacctacctgtaagaagataatgactgttttgacagttggcatcttttggccagtt
ttgtcactgtgttatttgatagctcccaaatctcaatttggcagaatcattcatacacct
tttatgaaatttattattcatggagcatcatatttcacattcttgctgttattaaatctg
tactctctcgtctacaatgaggataagaaaaacacaatggggccagcccttgaaagaata
gactatcttcttatactgtggattattgggatgatttggtccgacattaaaagactctgg
tatgaagggttggaagactttttagaagaatctcgtaatcaactcagttttgtcatgaat
tccctttatttggcaacctttgctctcaaagtggttgctcacaataagtttcatgatttt
gctgatcggaaggactgggatgcattccatcctacacttgtggcagaagggctttttgca
tttgcaaatgttctgagttatctacggctcttttttatgtatacaaccagctctatcttg
ggtccattacagatttcaatgggacagatgttacaagattttggaaaatttctcggaatg
ttccttcttgttttgttttctttcacaattggactgacacagctctatgataaaggctat
actccaaaagaacagaaagactgtgtgggcatcttctgtgaacagcaaagcaatgatacc
ttccattcgttcattggcacttgctttgctttgttctggtatattttctccttagcacat
gtggcaatctttgtcacaagatttagctatggagaagaattgcagtcctttgttggagcc
gttatcgttggtacatacaatgtggtagttgtgattgtgcttacgaagctgctggtagca
atgcttcataaaagctttcagttgatagcaaatcatgaagacaaagaatggaagtttgct
cgagcaaagttgtggcttagctactttgatgacaaatgtacattacccccacctttcaac
atcattccttctccaaagactatttgctatttgattagtagcctcagtaagtggatttgt
tctcatacatcaaaaggcaaggtcaaacggcaaaacagtttaaaggaatggagaaatttg
aaacaaaagagggatgaaaactaccaaaaagtgatgtgctgcttagtgcatcgttacttg
acttccatgagacagaagatgcaaagtacagatcaggcaactgtggaaaatctcaatgaa
ctgcgccaagatctgtcaaaatttcgaaatgaaataagagatttgcttggctttcggact
tctaaatatgctatgttttatccaagaaattag
DBGET
integrated database retrieval system
