Sciurus carolinensis (gray squirrel): 124993345
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Entry
124993345 CDS
T08117
Name
(RefSeq) nephrocystin-3 isoform X1
KO
K19360
nephrocystin-3
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ncar03037
]
124993345
Cilium and associated proteins [BR:
ncar03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
124993345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_NPHP3
TPR_12
NPHP3_hel
NPHP3
TPR_10
TPR_1
TPR_8
TPR_7
TPR_2
TPR_MalT
TPR_16
TPR_19
TPR_17
NPHP3_N
TPR_3
TPR_11
AAA_16
HAT_Syf1_CNRKL1_C
KAP_NTPase
NACHT
ANAPC3
AAA_22
DUF2225
AAA_19
AAA_14
14-3-3
T2SSE
Viral_helicase1
FliD_C
ARM_TT21_4th
TPR-S
Motif
Other DBs
NCBI-GeneID:
124993345
NCBI-ProteinID:
XP_047421075
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All DBs
Position
9:23147656..23184898
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AA seq
1354 aa
AA seq
DB search
MGTASSLVSPAGGEVIEDTYGAGGGEACEIPVEVKPKARLLRNSFRRGAGVAAAAGPGSL
PRAAGSGGLLGASFKSTGSSVPELEYAAAEYERLKKEYEIFRVSKNQELLSMGRREAKLD
TENKRLRAELQALQKTYQKILREKESALEAKYQAMERAATFEHDRDKVKRQFKIFRETKE
NEIQDLLRAKRELESKLQRLQAQGIQVFDPGESDSDDNCTDVTAAGTQCEYWSGGALGSE
PSIGSLIQLQQSFRGPEFAHSSIDVEGPFANVNRDDWDMAVASLLQVTPLLSHSLWSNSV
RCYLIYTEETQPEMDLFLKDYSPKLKRMCETMGCFFHAVYFPIDVENQYLTIRKWEIEKS
SLVILFVHSTLPSLLLEDCEEAFLKNPEGKPRLIYHRLEDGKVSSDSVQQLIDQVSNLNK
ANKAKFIDHSGDPAEGVYKTYICVEKIIKQDILGFENTDLETKDLGSDDSPPEEDDFGDV
LWDIHDEQEQMETFQQASNSAHELGFEKYYQRLNDLVAAPAPIPPLLVSGGPGSGKSLLL
SKWIQLQQKNSPNTLILSHFVGRPMSTSSESSLIIKRLTLKLMQHSWSVSALTLDPAKLL
EEFPRWLEKLSARHQGSIIIIIDSIDQVQQVEKHMKWLIDPLPVNVRVIVSVNVETCPAA
WRLWPTLHLDPLNPKDAKSIIIAECHFVDIKLNKEQEKKLERHCRSATTCNALYVTLFGK
MMARSAGRAGGVDKVLQECLQCQDTVSLYRLVLRSIQESMANDVDRELMRQILCLVNVSH
NGVSESELMELYPEMSWAVLTSLIHSLHKMCLLTYGCGLLRFQHLQAWETVRLEYMEGPA
TISSYRQKLIGYFTLQLSQDRVTWRSADELPWLLQQQGSKQKLHDCLLNLFVSQNLYKRG
HFAELLSYWQFVGKDKSAMATEYFDSLKQYEKNCEGEENMICLADLYETLGRFLKDLGLL
SQAVVPLQRSLEIRETALDPDHPRVAQSLHQLASVYVQWKKFGNAEQLYKQALEISENAY
GADHPHTARELEALATLYQKQNKYEQAEHFRKKSFKIRQKATRRKGNLYGFALLRRRALQ
LEELTLGKDTPDNARTLNELGVLYYLQNNLETADQFLKRSLEMRERVLGPDHPDCAQSLN
NLAALCNEKKQYEKAEELYERALDIRRRALAPDHPSLAYTVKHLAILYKKMGKLDKAVPL
YELAVEIRQKSFGPKHPSVATALVNLAVLYSQMKKHIEALPLYERALKIYEDSLGRMHPR
VGETLKNLAVLSYEEGDFEKAAELYKRAMEIKEAETSLLGGKAPSRHSSSGDTISLKTTH
SPNVFLPQGQSLPFPLTDRAKHPAFCVHHIAYFL
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atggggacagcctcgtcgctcgtgagtcccgccggcggggaggtgatcgaggacacttac
ggggcgggcggcggcgaggcctgcgagatcccggtggaggtgaagcccaaggcccgccta
ctgcgcaactcgttccgccggggcgcgggggtggcggcggcggccgggcccgggtcgctg
ccccgcgctgcgggcagcggcgggctcctgggcgccagcttcaagtccaccgggtcgtcg
gtgccggagctggagtacgcagcggccgagtacgagcggctcaagaaggagtacgagatc
ttccgggtcagcaagaaccaagagttgttgtccatgggccgccgcgaggccaagctggac
actgagaacaagcggctgcgggccgagctgcaggcacttcagaaaacttatcagaagata
cttcgggaaaaagaaagtgctttagaagcaaaataccaagcaatggagagagcagctaca
tttgaacatgacagagataaagttaaaaggcaattcaagatttttagggagaccaaagaa
aatgaaattcaggacttattgagggccaagcgagaactggagagcaaacttcagaggcta
caggctcaggggatccaagtatttgatcctggggagtctgattcagatgacaactgtaca
gatgttactgctgctggaacccagtgtgaatattggagtggtggagccttgggaagtgag
ccctccatagggagcttgatccagcttcagcagtccttcagaggtccagagtttgcccac
agttctatagatgtggagggaccctttgcaaatgtcaacagagatgattgggatatggcc
gtagctagtttattacaggttactcccttgttgtcacattctctatggagtaactctgtc
agatgttacctcatttacacagaggaaacccaacctgaaatggatcttttcctgaaggat
tattcacctaaacttaaaagaatgtgcgagacaatgggatgttttttccatgctgtttat
tttccaatagatgttgaaaatcaatacctcactataagaaaatgggaaattgagaagagt
tctttagttattttatttgttcactcaactttaccaagccttttattggaagactgtgaa
gaagcctttctgaaaaaccctgaaggaaaaccacggttaatttatcatcgtctggaggat
gggaaagtcagttccgactctgtccagcaattgattgatcaagtttctaacctcaacaag
gccaacaaagccaagttcattgatcactcaggagatcctgcagaaggagtatataaaact
tacatttgtgtggaaaagattattaaacaggacatactgggctttgagaacacagacctg
gagactaaggatttgggaagtgatgattcccctccagaagaagatgattttggggatgtt
ctgtgggacatacatgatgaacaggagcaaatggaaacctttcagcaggcttctaattca
gctcatgagttaggattcgagaagtattaccaacgcctcaatgacctggtggcagcacca
gccccgattccaccccttctggtgtctggaggaccaggttctggaaagtcccttctttta
tcaaagtggattcagttgcaacagaagaattccccaaacacgctgatcctttctcatttt
gtggggaggcccatgtcaaccagctcagagtcctccttgattattaaacggctgacctta
aagttgatgcagcactcttggtctgtgtcagcactgactctggatcctgctaagctcctg
gaagaatttccacgttggctagagaaactctctgcacgtcaccaaggcagcatcatcatc
attatcgattctatagatcaagttcagcaagttgagaagcacatgaaatggctaatagac
ccactgccagtgaacgtaagagtaatagtttctgtgaacgtggaaacttgccctgcagca
tggaggttgtggcctacacttcatctcgatcctttaaatccaaaagatgcaaaatctatt
ataattgcagaatgccattttgtagacattaaattgaataaagagcaggagaagaaacta
gaacgacactgtcgttctgctacaacctgcaatgccctttatgtcacccttttcggcaaa
atgatggcacgcagtgctgggagagcaggcggtgtagataaggtccttcaggagtgtctc
cagtgccaagacactgtctcactgtacaggcttgttctgcgctccatccaggagtccatg
gcaaacgacgtggacagagagctaatgagacagattctctgccttgtcaatgttagtcac
aatggggtgagtgaatcagaattgatggaactctatcctgagatgtcctgggctgtcttg
acctccctcattcacagtttacataaaatgtgtttgttgacatatggttgtggcttgctc
aggtttcaacatctccaagcctgggagacagtgagactagagtacatggaaggtcctgcc
accatttcttcatacaggcaaaagctaattggctatttcaccttgcaactaagccaggac
agagtgacttggaggagcgcagacgagctcccttggcttttgcagcagcagggaagtaaa
cagaagctgcacgattgcctcctcaacctcttcgtgtctcagaacctttacaaaagagga
cacttcgctgagttgctgagttactggcagtttgttggcaaagacaaaagtgcaatggcg
accgaatactttgactctttgaagcagtatgagaaaaactgcgaaggagaggagaacatg
atttgcttagctgatctctatgaaaccctgggacgatttctcaaggatcttggcctcctc
agtcaggctgtggtgcctttgcagaggtctctggaaattcgagagacagccttagatcca
gatcacccaagagtagcccagtccctccaccagctggcaagtgtgtatgtgcaatggaag
aagttcggcaacgcagagcaactgtataaacaggctttggaaatctcagaaaatgcttat
ggcgcggaccatcctcacactgctcgtgaactggaggcacttgcaactttgtaccagaag
caaaacaaatatgaacaagctgaacattttaggaaaaaatcctttaagattcgtcagaaa
gctacaaggagaaaaggcaacttgtatgggtttgcccttctacgaagacgggccctacag
ttagaagagcttaccttaggtaaggacacacctgataatgcccgtaccctcaacgaactg
ggtgttctctactatcttcaaaataacctggaaacagctgaccagtttctgaagcgttcc
ttagaaatgagggagcgtgttctaggaccagatcaccccgactgtgcccagtctctgaat
aatctggcggctctgtgcaatgaaaagaaacagtatgagaaagcagaagagctttacgaa
agagctttagatattcggagacgcgccttagctcctgatcacccttctttggcatatacg
gtgaagcaccttgcaatcttgtataagaaaatggggaaactagacaaagctgtgccttta
tacgagttggctgttgaaattcggcagaaatcctttggcccaaagcaccctagtgtggca
acagctttggtgaacttagcagttctttatagccaaatgaaaaagcacattgaagccttg
ccattatatgaaagagcattaaagatctatgaagatagcctgggtcggatgcatcctcga
gttggagaaacgttaaaaaacttagctgtgcttagctatgaagaaggggattttgaaaaa
gctgctgaactgtacaaaagggccatggagataaaagaagcagaaacatcactcttgggg
ggaaaagctccttcaagacattcatcaagtggggacactatcagcttaaaaaccactcac
tctcctaatgttttccttcctcaaggacaaagtctgccttttcccttgacagatcgggcc
aagcaccctgccttctgtgttcaccacatcgcatattttttatga
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integrated database retrieval system
