KEGG   Sciurus carolinensis (gray squirrel): 124993645
Entry
124993645         CDS       T08117                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03018  RNA degradation
ncar03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124993645
  09123 Folding, sorting and degradation
   03018 RNA degradation
    124993645
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncar03019]
    124993645
   03041 Spliceosome [BR:ncar03041]
    124993645
Messenger RNA biogenesis [BR:ncar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     124993645
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     124993645
Spliceosome [BR:ncar03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    124993645
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 124993645
NCBI-ProteinID: XP_047421436
LinkDB
Position
9:complement(66901052..66902751)
AA seq 159 aa
MTLAISGLAKTTNTITSLSQLLPLELVDKCIGSRIHIMMKNDKEIVMFLRFDDFVNMVLE
DVTEFEITPEGRRTTKLDQIFLNGNNITMLVPGGKGPEGCEGYLAVTPFIARIDSDDLAS
QAVFPSSLTRSMCVPSETESSVKRKTFPIEKDHSLVKDI
NT seq 480 nt   +upstreamnt  +downstreamnt
atgacactggccatttctggcttagccaagaccactaatactattaccagcctgtcacag
ctgcttcccttggagcttgtggacaagtgtataggatcaagaattcacatcatgatgaag
aatgataaggaaattgttatgtttctaagatttgatgactttgtcaatatggtgctggaa
gatgtcactgagtttgaaatcacaccagaaggaagaaggactactaaactagatcagatt
ttcctaaatggaaataatataacaatgctggttcctggaggaaaaggacctgaaggatgt
gagggctatctggctgtcaccccattcatcgccaggattgattcggatgatctggctagc
caggctgttttcccttcctccctcacccgctccatgtgcgtcccttctgaaactgagagc
tcagtgaagaggaagaccttccccatagagaaggaccattctttggtcaaggatatatga

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