Sciurus carolinensis (gray squirrel): 124994022
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Entry
124994022 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: PDZ and LIM domain protein 5-like
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124994022
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ncar04990
]
124994022
Domain-containing proteins not elsewhere classified [BR:
ncar04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
124994022
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Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
PDZ_6
DUF4749
PDZ_2
Motif
Other DBs
NCBI-GeneID:
124994022
NCBI-ProteinID:
XP_047421608
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Position
10:complement(61090439..61300344)
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AA seq
623 aa
AA seq
DB search
MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQANVRIGDVVLSIDGISAHG
MTHLEAQNKIKGCTGSLNMTLQRASATPKPEPVSVPKPTVTSVCSETAHELAEGQRXGSQ
GDIKQQNGKTPPKRPPRKHIVERNTEFYHIPTHSDASKKRLIEDTEDWRPRTGTTQSRSF
RILAQITGTEHLKESETDNTKKAKFDSSLEDLLKSEPHPPAIPQVLNIGRQVATLPKVAT
TCPSSSTRNVEGSLEGSGNFSTFSSPARYSAAVLSSAAATVSAVIAAKTRLSSPEKYCSL
LEALCISPVFQPLAFSHLQSCRRLAGSVHVKKTSNSQEPSQQLASPAASARSMPETLESP
GSSRPGVASLTTAAAFKPVGSTSAIKSPNWQRTNQAAPSTGRISNSGTPSGAGAPANSAA
GQPQPSDQDTLVQRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTM
AYIGFVEEKGALYCELCYEKFFAPECGRCQRKILGEVINALKQTWHVSCFLCVACGKPIR
NNVFHLEDGEPYCETDYYALFGTICRGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESL
EGQTFFSKKDKPLCKKHAHSVNF
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgagcaactacagtgtgtccttggttggcccagctccttggggtttccggctgcaaggt
ggcaaggatttcaacatgcccctgacaatctctagtctaaaagatggtggcaaggcctcc
caggcaaatgtaagaataggtgatgtggtcctcagcattgatggaataagcgcccatgga
atgactcatctggaggcccagaacaagattaagggttgtacaggctctttgaatatgact
ctgcaaagagcatctgcaacacctaaacctgagccagtttctgttccaaagcccacagtc
accagcgtgtgttccgagactgctcacgagctagcagagggacagaganaaggatcccag
ggtgacattaagcagcaaaatgggaaaaccccacctaaacgcccaccaagaaaacacatt
gtggagcgtaatacagagttttatcacatacccactcacagtgatgccagcaagaagaga
ctgattgaggatactgaagactggcgtccaaggactggaacaactcagtctcgttctttc
cgaatccttgcccagatcactgggactgaacatttgaaagaatctgaaactgataataca
aagaaggcaaagtttgacagttctctggaagacctactcaagagtgaacctcacccacct
gcaattcctcaggtgttaaatattggtagacaagtagccacacttcctaaagtagcaact
acatgtcctagcagctccacaagaaatgtagaaggttctttggaaggttctggaaacttt
tctaccttctcttctcctgctagatacagtgctgcagttctgagcagtgcagctgctacc
gtgtctgctgtcattgctgcaaaaaccaggctctccagtcctgaaaagtattgctctctg
ctggaggcactttgcatcagccctgttttccagcctctagctttctcccatctccagtcc
tgcaggagattggctggctctgtccatgttaagaaaacaagtaactctcaggagccttct
cagcaattggcttccccagcagcttcagctcggagcatgcctgagactctggaaagccca
ggctccagcaggccaggggtggccagcctcacaactgctgctgccttcaagcctgtagga
tctaccagtgccatcaaatcaccaaactggcaacggacaaaccaagcagcaccttccact
ggaagaatctcaaacagtgggactccttcaggagcaggggcaccagccaactccgctgca
gggcagccccagccaagtgaccaagatactttagtgcagagagctgagcacattcctgca
gggaaaagaactccaatgtgtgcccactgtaatcaggtcatcaggggaccattcctagtg
gcactggggaaatcttggcacccagaagaatttaactgcgctcactgcaaaaatacaatg
gcctacattggattcgtagaggagaagggagcgctgtattgtgagctgtgctatgagaaa
ttctttgctcctgaatgtggtcgatgccaaaggaagatccttggagaagtcatcaatgct
ttgaagcaaacttggcatgtttcctgttttttgtgtgtggcctgtggaaaacccattcgt
aataatgtttttcacttggaggatggggaaccctattgtgagaccgattattatgccctt
tttggtactatatgccgtggatgcgaatttcccatagaagctggtgacatgttcctggaa
gctctgggctatacctggcatgacacttgctttgtatgctcagtctgttgtgaaagtttg
gaaggtcagacgtttttctccaagaaggacaagcctctttgcaagaaacatgcacattct
gtgaatttttga
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