Sciurus carolinensis (gray squirrel): 124994364
Help
Entry
124994364 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03030
DNA replication
ncar03410
Base excision repair
ncar03420
Nucleotide excision repair
ncar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124994364
03410 Base excision repair
124994364
03420 Nucleotide excision repair
124994364
03430 Mismatch repair
124994364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncar03032
]
124994364
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124994364
DNA replication proteins [BR:
ncar03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
124994364
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
124994364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
Rad17
RuvB_N
AAA_14
AAA_5
BRCT_2
AAA_18
AAA_17
AAA_30
AAA_33
AAA_16
AAA_7
RNA_helicase
nSTAND3
Zeta_toxin
NTPase_1
NPHP3_N
AAA_19
AAA_28
Motif
Other DBs
NCBI-GeneID:
124994364
NCBI-ProteinID:
XP_047422107
LinkDB
All DBs
Position
10:109018179..109088808
Genome browser
AA seq
1146 aa
AA seq
DB search
MDIRKFFGVLPSGKKLVSETVKKNEKTKSVEESLKGKKGIEEIKVNSSCKEDASKQKQPN
KRKRIIYDSDSESEETVQVKNAKKQSEKLPLSSKPSKILRQDPVTYLSETDEDDDFMCKK
AASKSKENGRSTNSYLGASNMKKNEENTKIKNKPLSPIKLTPTSVLDYFGTGSVQRSDKK
MVASKRKEPSQNTKDSKLNDEAIAKXLQLDEDAELERQLHEDEEFARTLAMLDEEPKTKK
ARKNTEERETFSSARANLSKPEKHKYPHKVKTEQFSNTRKSYSPNKPTKCENSKESQQHS
KSSGVSSSPKVSSKLALMKTKEESSFKETEPVASKRKDNASELKGEKKTPKKTKSSPAKK
ESLSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERD
EAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPG
KKSKYEIAVEAEMKKEKSKLERTPQKNNQGKRKCSPTKKESESKKSKLTPKRDSSIKAVK
KETEDINVPRRGLDFKEQVAQDTQGDSKTRELTDSSESKVENLLWVDKYKPTSLKTIIGQ
QGDQSCANKLLRWLRNWHKSSPEEKKHAKFGKFAGKDDGSSFKAALLSGPPGVGKTTTAS
LVCQELGYSYVELNASDTRSKNNLKALVAESLNNTSIKGFYSSAAAPSVSTQHALIMDEV
DGMAGSEDRGGVQELISLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKG
AMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKK
DIKLGPFDVARKVFAVGEETAHMSLMDKSDLFFHDYSIAPLFVQENYVHVKPVAAGGDMK
KHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQFPAFPSW
LGKHSSTGKHDRIVQDLALHMSLRTYCSKRTVNMDYLSHIRDALVQPLTSQGVEGVQDVV
ALMDTYYLMKEDFENIMEISSWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLQVIKA
SRPSTGPALDSEYNEELQEDDSQSDEKDQDAIETDAMIKKKTKSPKPSKPEKDKESKKGK
GKSLKK
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggacattcggaaattctttggagttctaccaagtggaaaaaaacttgtaagtgaaaca
gtaaagaagaatgagaaaacaaagtctgttgaagaaagtttaaaaggaaagaaaggaata
gaggaaatcaaggtaaatagctcttgtaaagaggatgcctccaaacagaagcaaccaaac
aagagaaagaggattatctacgattcagattcggaatcagaggagacagtacaggtaaaa
aatgccaaaaagcaatcagaaaaattgccattgtcttctaaacctagcaaaattttgcga
caggatcctgttacatacctttcagaaacagatgaagatgatgactttatgtgtaagaaa
gcagcctctaaatcaaaagagaatggaagatctacaaatagttatcttggtgcatcaaac
atgaaaaagaatgaagagaacactaagatcaagaataagcctctatcaccaataaaactt
acaccaacctcagtgcttgattattttggaactggtagtgtccaaagatcagataagaag
atggtggcaagcaaaagaaaagagccgtcacaaaatacaaaggattccaaattaaatgat
gaagccattgccaagncattgcaacttgatgaagatgcagagctggagaggcaattgcat
gaagatgaagagtttgccagaacgttagccatgttggatgaggaacctaagaccaaaaag
gcccgaaagaacactgaagagagagaaacattttcatctgcccgagccaatttaagtaaa
ccagaaaaacataaatatcctcataaagtaaaaacagaacaattttcaaatacaagaaag
agctacagtcctaataagccaactaaatgtgaaaactcaaaagaatctcagcaacattcc
aagtcatcaggagtatcctcttctccaaaggtcagttctaagttggcacttatgaaaaca
aaagaagagagttcctttaaagaaacagagcctgtggcctcaaaaagaaaagacaatgcc
agtgaattaaaaggagagaagaaaactcctaagaaaaccaaaagttctccagctaaaaaa
gagtctttaagtccagaagattctgaaaagaaacgcactaattatcaagcttatcgaagc
tacttgaatcgagaaggtcccaaagctctgggttccaaagaaataccaaagggagctgaa
aattgcttggaaggccttatatttgtgatcacaggagtgctggagtccattgaacgagat
gaagccaagtctttaattgaacgttacgggggaaaagtaacaggaaatgtcagcaagaaa
acaaactaccttgtcatgggtcgtgatagtggacagtccaagagtgataaggcagcagcc
ttggggacaaaaattattgatgaagatggactattgaatttgattcgaactatgccaggc
aagaagtctaagtatgaaatagcagttgaagctgagatgaagaaagaaaaatccaaattg
gagagaacaccccaaaaaaataaccaaggaaaaagaaaatgtagtccaaccaagaaggaa
tcagaatctaaaaagagcaagctaactcctaaaagggacagttccataaaagcagtaaaa
aaggagacagaggatataaacgtgcctcggagaggcctggactttaaggagcaggtggcc
caggacacacagggtgatagcaagactagggaattaactgacagcagcgaaagcaaagtg
gaaaatttgctctgggtggataaatacaagccaacttcactcaagaccataattggacag
caaggtgaccagagctgtgccaataaactgctgcgctggctccgaaattggcataagagt
tctcctgaagagaaaaaacatgcaaagtttggtaaatttgctggcaaagatgatggctct
agttttaaagcagcattgctctcaggccctccaggtgttggcaaaaccaccacagcttct
ctggtgtgtcaggaattaggatacagctacgtggaactaaatgcaagtgacactcggagt
aagaacaatttgaaggcgcttgttgctgaatcactgaataataccagcatcaaaggcttt
tattcaagtgcagcagccccttccgtaagcacgcaacacgcgctcatcatggacgaagta
gacggcatggcaggcagtgaggaccgcgggggagtgcaggaattaatcagcctcataaaa
catactaaaatccccattatttgtatgtgtaatgatagaaatcatcccaagattcgctct
ttggttcattactgttttgatcttcgttttcaaagacctcgggttgaacagattaagggt
gctatgatgtctattgcatttaaagagggcttaaagattcccccacctgcaatgaatgaa
ataattttgggagccaatcaagatatcagacaggttttgcacaatctgagtatgtggtgt
gcacgaagtaaggcactaacctatgaccaggccaaggccgactctcacagagccaagaag
gatatcaaactgggcccatttgatgttgcccggaaggtgtttgcagttggagaagagact
gctcacatgtcgcttatggacaaatcggatctcttttttcatgactattcaatagcaccc
ctctttgtccaggagaactacgtacatgtgaagcctgtagctgcagggggtgacatgaaa
aagcacttgatgcttttaagccgagcagcagacagcatatgcgatggtgacttggtggac
agtcagatccggagtaagcagaactggagtcttctgcccacacaggccatttatgccagt
gttcttcctggggagttgatgagggggtacatgacccagtttcccgcctttccgagctgg
ctgggcaaacactcatctacgggcaaacacgatcgtattgttcaggacctagcattgcat
atgagtctcagaacttactgtagcaaaaggactgtgaacatggattatctgtcgcacata
agggatgcacttgtacaacccttgacctcacaaggggtagaaggagtacaggatgttgtt
gcacttatggacacatattatctgatgaaagaagactttgagaatatcatggaaattagc
agctgggggggcaagcctagtcccttttccaagctggaccccaaggtgaaagcagccttc
acaagagcttacaataaggaggcccacctcaccccgtactcactgcaggtaataaaggca
tctagacccagcacgggcccagcactagattctgaatacaacgaagagttacaggaagat
gactctcagtctgatgagaaagaccaagatgctatagagactgacgcaatgatcaagaaa
aagacaaaatctccaaagccttcaaaaccagaaaaagataaggagtccaaaaaaggaaaa
ggaaaaagtttgaagaaatga
DBGET
integrated database retrieval system
