Sciurus carolinensis (gray squirrel): 124994405
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Entry
124994405 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: biorientation of chromosomes in cell division protein 1-like 1
KO
K27262
biorientation of chromosomes in cell division protein 1-like 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124994405
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
124994405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COMPASS-Shg1
Motif
Other DBs
NCBI-GeneID:
124994405
NCBI-ProteinID:
XP_047422190
LinkDB
All DBs
Position
10:131497109..131549025
Genome browser
AA seq
3033 aa
AA seq
DB search
MATNPQPQPPPPAPPPPPPQPQPQPPPPPPGPGTGPGAGGAGGAGAGAGDPQLVAMIVNH
LKSQGLFDQFRRDCLADVDTKPAYQNLRQRVDNFVANHLATHTWSPHLNKNQLRNNIRQQ
VLKSGMLESGIDRIISQVVDPKINHTFRPQVEKAVHEFLATLNHKEEASGSTSPDDEKPD
SSVVTQGVPAPGPSANVAKDAMSILETITSLNQEANAARASTELSNAKTNERLSKKLSSQ
PSSDISIDKERTSEDLTDKEKTTPDTGGEGLETAPKSEEHSDLPCPVEEIKNYTKENSSL
ILLSKDVQQENGDQKNKSTDKGEKKPDSNEKGERKKEKKEKTEKKLDYSKRSEDTQKVKD
EKQTKEKEVDSSKLPSEKNKTNTVEGAREDCSLIDSDVDGLTDITVSSVHTSDLSSFEED
TEEEVVMSDSMEEGEITSDDEEKNKQNKTKTQTSDSNEGKPKSVRHAYVHKPYLYSKYYS
DSDDELTVEQRRQSIAKEKEERLLRRQINREKLEEKRKQKAEKTKSSKAKAKGKSPVDFE
ESSTKSLEPKAPRIKEVLKERKVLEKKVALSXKRRKDSRNVEENSKKKQQSEEDSKETFK
TNEHCEKEKTSSSKELKHAYAKSEPSKPARRLSESLHSADENKNESKIEREHKRRTSTPV
VMEGAPEETDTRDGKRQTERSEIAMEEPQKQKSTLKNEKHLKKDDSETPHLKSLPKKDVK
SSKEKPEKEKTLSEEKSSMKHKYKGDSMHKAGDETELHSSEKSLKVEENSQKQSQQTKLS
SDEKAERKSKHRNERKLSVLGKDGKPVSEYIIKTDDNVRKDNNKKERHLSTEKTKVEHKS
RRSSDSKIQKDSLGSKQHGVTLQRRSESYSEDKCDTDTTNLDSNLKPEEVVHKERRRTKS
LLEEKLVLKSKSKGQGKQLKIAETELQDNVTKQMTIPKPDKEKNTEENDSEKQRKSKVED
KPIEETGVEPVSESAAASAHSTQRDSSHRTKLPPAKEKSKGERDSGSSRLDRKLSDGHKN
KSLKHGSKDMKKREENKSDDKDGKEVDSNHEKARGNGSVLEKKLSRKLCENRRGSLSQEM
TKGEEKLAANTLGTPSTSSLQRPKKCGDSTSMPEQEPMEIDSEAVVENVLEVSKPQDSSN
SSSQHDLDSENVTKQKTATTVLKDELRTSTVDSKTAGTACKPGRGTGVTGNSEKHADHNK
STLTKKMHIQSAVSKPNPGEKEPIRGTHEVNVDSKTSQKMFPSVPSENDRPQKNLKSIAR
PTEECVTQGDAAVEHSTDVDPSLSLGSMTVMPQKEFHDSAVIPLVDRTVLGGSTASPSLV
NRSHIPNQSLTARRSEAPRTSDSKEGGKASIVDTPAKVSVASKRHIPEGYQDTSLDSKQG
KVNTSLASKSSDMIVENENFSKEGGLIDTTKQESDLSAESSLKQTGRATVENGKKDGVAV
SLVADMSTGNDAETVALKHNRVPAEIKNLSVDAERSEISEVDTSAGGSAASSVLQQRNGK
PENLVTGARGAERASVATSTEEKDKGIDLNPIKTGDATTTSSETGERGVAFPCTSIEADE
GFVVGACPINNPLLGQVEASECTVFAAAEEGGGVVTEGFAASETFLTSTKEGESGECSVA
ESEDRAAGPVTAHTVKSEASMNSVAVEEKDDAVTSAGSEEKCDGSSSTDPEIVEGTGTFI
SEIESDGAVTSAGTEIGMGSMSSEEIDRSQGNRTRMGPKKETEGTVTCTGAEGRNDNFVI
CSVTEAGPQEERMVTGADVVLVDNDTPPGISANQEGDGSVNDGAEGESAVTSTGITEEDG
EGPASCMGSEDSGEGCAISSETEENGEGAMDSTVAKEVTNAPLVATGPCDDEGIVTSTGA
KEEDDEGEGIVTSTGRGNEIGHASTCTGIGEESEGVLICESAEGDSQIGPTVEHVDAEAG
AGIMNANESNIDSMSGAEKEIKDTEICSSAKGIVESSVTSAVAGKSQVAPIPQGCEDLMT
SATSDQSDSHLTRKEKVDDTSISTGLVGGSHEILIFGAVPECEVDHTSPSEKEDESIITS
VENEECNGLMTATAGGNISNQDDLAGGKSQGKGLMISTSTSDYTSQVSTVVDMGEGHSRS
LRTEENLEGTRINLEEFEAPMPSAVSGDENQLTARSCEEKDECAMISTSIGEEFEMPISS
ATTIKCAESQQPVAVVEERAKGPVLVSTEDFEVPMPSAPTEVECPLASTSKEDKDECALI
STSIAEECEASISGVSENAQSITDGSAIISTSSVEDCEGPVSSAVPQEKVRAPVTPVEES
SDTTMISTSTSEGCEAVMIGAVPADEDQATTARVEDSGDAAIISTSTAECVLMVTSLDRP
KESQLAASKSEGNDGLPKVSRCEIPLPSLIAENNRQRPGPFTGGKEAGPRLAVSTQEGHN
RLSLCEPSREQSQPRTEAIEEEDRHDKDCPVQGSFAARGQNENTLHLINVEEKNVMLSSI
QRKDESPEKETVGGSSTTSCSPAGRGSEKSATSSVHLRGLQQRAGDISVSICSLSAVNTG
AKKADDMLPVKDTAPEYSNPPDQQEQEGNLKTTTTKCITGQESKIASSHPVSLPAASHVA
QSLALKCGKDLTTKSDHSSKQAVEASTEKTGHGNGTQRSLHGEGNVEDAVCVEPSVCDIG
NEESPPKVLEGAELSTHFKTEILVSSGKEKHQNVLAPPGTVCGAELQKELSSVNESLNVE
NSGSRANEEVHNESYKKSGISSGGKDNTEAIRGHSVEANSKEVEEEERHIPKRKRKKNYA
SSEDELDGNSDVLDSRIETTQKQCSETEPQDTKEENSGDLDEVSKTNSKTNSTASRTMEE
KDELSSSEATSEKPEQNEDDSIKSQEEDQPIIIKRKRGRPRKYPVETALKTKDDSKTDTV
IATVEHSPPSSKLKMMQTDESNKETATLQERSISNDDGDEKTVASARRRGRKPKRSLTLS
DDAEFSEPERKRQKSVSEATEDKKDQESDEEEEEEEEEEPLGATTRSTTRSEAQRSKTQL
SPSTKRKREVSPPGARTRGQQRVEEAPVKKAKR
NT seq
9102 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaacccgcagccgcagccgccacctccggcgccgccgcctcccccgccgcag
ccgcagccgcagccgccgccgccgccgccgggccctgggactggcccgggcgcgggaggg
gcgggcggcgcgggggccggcgccggggacccgcagctcgtggccatgatcgtgaaccac
ctcaagagccaggggcttttcgaccagttccgcagggactgcctggccgacgtggacacc
aagcctgcctatcagaatctgagacagcgtgttgacaactttgttgcaaaccacttggct
actcatacatggagtccccatctcaataagaaccaactaagaaacaatattcggcaacaa
gtcctcaaatcgggaatgctggagtctggtatcgaccgaattatttctcaggttgtggat
ccaaagatcaaccacacattcagacctcaggtggaaaaagctgtgcatgagtttttggcc
acactaaatcacaaagaggaagcaagcggcagcacatctccagatgatgagaaaccagac
tcctccgttgttacacaaggtgtccctgctcctggacccagtgctaatgtagccaaggat
gccatgtcaatcttggaaactataacttctcttaaccaggaagctaatgctgccagggct
tcaacagaattgtccaatgccaagaccaatgagagactgtctaaaaaactctcatctcag
ccaagcagtgacattagtattgacaaagagagaacttcagaggacttgactgataaagaa
aaaactacacctgacactggaggggaaggactggaaacagccccaaagtcagaagagcat
agtgatctcccttgtccagttgaagaaattaaaaactacacaaaagagaacagtagctta
attctactcagtaaggatgttcagcaggaaaatggtgatcaaaaaaataagtcaacagac
aaaggtgaaaagaaaccagacagcaatgagaaaggagaaagaaagaaagaaaagaaagaa
aagactgaaaagaaacttgattactcaaaaagaagtgaagatacacaaaaagtaaaagat
gaaaaacaaacaaaggaaaaagaagtagacagttcaaaacttccttcagaaaagaacaaa
accaacactgttgaaggggcgagagaagattgctctttgatagattctgatgtggatgga
cttacagacatcacagttagctctgtccataccagtgacctttcttcttttgaagaagac
actgaggaggaagtggtaatgtctgatagcatggaagaaggagagattacatctgatgat
gaagaaaagaacaaacagaacaaaacaaaaactcaaaccagtgattctaatgaaggaaaa
ccaaaaagtgtacggcatgcttatgttcacaaaccatacctttactcgaagtactatagt
gattctgatgatgagcttactgtggaacagcgacgacagtctattgctaaagaaaaagaa
gagagacttttaagaaggcagattaatagagagaaacttgaagaaaagcgaaaacagaaa
gcagaaaagacaaagtcttccaaagccaaagccaagggaaaaagtcctgtggacttcgaa
gaatcatcaacaaagagtttggaaccaaaagcccccagaattaaagaagtccttaaagaa
cggaaagttttagagaaaaaagtagccttaagcnaaaagagaagaaaggattcaaggaat
gttgaagagaattccaaaaagaaacagcagtctgaagaagattccaaagaaaccttcaaa
acaaatgagcactgtgaaaaggaaaagacatcttcttcaaaggagctgaagcatgcttat
gcaaaaagtgaaccaagtaaacctgcccggagactttcagagtctttgcattcagctgat
gaaaacaagaatgaatccaaaattgaaagagaacataaaagacggacatctacccctgtg
gttatggaaggagcaccagaagaaactgacaccagagatggaaaaagacaaacagaacgc
tcagaaattgccatggaagaaccccagaaacagaagagcacacttaaaaatgaaaagcat
ttgaagaaagatgattctgaaacaccacatttgaaaagcttacctaagaaagacgtgaaa
tcctccaaggagaagccagaaaaagagaaaactctgtcagaagagaaatcatctatgaaa
cataaatataaaggtgacagtatgcataaagcaggtgatgagactgaacttcactcttct
gagaaaagtttaaaagtagaggaaaatagtcaaaagcaaagtcaacaaacgaagctttct
tcagatgagaaagctgaaagaaaaagtaaacatagaaatgaaaggaaattatcagtttta
ggcaaagatggaaagccagtttctgaatatattataaaaacagatgacaatgtacgaaaa
gacaacaacaaaaaagagagacatctgtctactgagaaaactaaggtagaacacaagtca
agaagatcaagtgattctaaaattcagaaagattctctaggttccaagcaacatggtgtc
acattacagcgaagaagtgaaagttattcagaagataagtgtgatacagacacgactaat
ttagatagcaatttaaaaccagaagaggttgttcacaaggagaggcgaagaacaaagagc
ttgttggaagagaagcttgtgttgaagtctaaatcaaaaggtcagggcaaacaattaaaa
attgctgaaacagaattacaagacaacgtcacaaaacagatgacaattccaaaaccagat
aaggagaagaacacagaagaaaatgactcagaaaaacagcgcaaatctaaagttgaagac
aaacctatagaagaaacgggtgttgagcctgtatcagaaagtgctgctgcttcggcacat
agtacacaaagggactctagtcaccgaactaagttaccaccagcaaaagagaagtctaag
ggggagagggactcaggctcctccagactcgacaggaagctatcagatgggcacaaaaac
aaaagcttaaagcatggcagcaaagatatgaaaaaaagagaagaaaacaaatcagatgac
aaggatggtaaagaagttgacagtaatcatgaaaaggccagaggaaatggttcagtccta
gaaaagaaattgagtagaaagttgtgcgaaaatcgaagaggaagcttatcacaagaaatg
actaaaggagaagaaaaattagcagcaaacacactgggcactcccagtacttcttccctt
cagagaccaaaaaaatgtggtgactccacatcaatgcctgagcaagagccaatggaaatt
gattctgaggcagttgtcgaaaacgtactggaagtgtctaaaccccaggacagcagcaat
agtagttctcagcatgacctcgactctgaaaatgttacaaaacaaaaaactgctaccaca
gttctaaaggatgagttaagaacttccacagtagattcaaaaacagcaggtacagcctgc
aaaccagggcgtggaacaggcgttactggcaattctgaaaagcatgctgaccataataaa
agcaccttgaccaagaaaatgcatatccaaagtgctgtatctaaaccaaatcctggggag
aaagagcccattcgaggaactcatgaagtgaacgtggactccaagacaagccagaaaatg
ttccctagtgtcccatcagaaaatgataggccacaaaagaatttgaaaagcatagccaga
cccactgaagaatgtgttactcaaggagatgctgctgttgaacattccacagatgtagac
ccctcattatctttaggttcaatgactgttatgcctcagaaagaatttcatgactcagct
gtgattcctctagttgacagaactgttttaggaggcagcacagccagcccctcccttgtg
aatcgctctcatatccctaaccaaagcttgactgctaggagatcagaagcccctaggaca
agtgacagcaaagaaggcggcaaagcttccatagtagacacaccagcaaaagtaagtgtg
gccagcaaaagacacattccagaaggttaccaggacacttccttggacagcaaacaggga
aaagtgaacacatctcttgctagcaagtcatcggacatgattgtggaaaatgagaatttt
agtaaagaaggtggattgatagacacaaccaagcaagaaagtgacttaagtgcagagtcc
agtttaaagcagacaggtagagctacagtagaaaatggcaagaaggatggcgttgctgtc
agtcttgtggcagacatgagtacgggaaacgatgctgaaaccgtggcacttaagcataat
agagtcccagctgaaattaaaaatctatcagttgatgccgaaaggagtgaaatcagtgag
gtggacaccagtgctgggggcagtgctgcctcctcggtcttgcagcagaggaatggaaaa
cctgagaatttggtgactggcgctcgaggagcagaaagggcttctgttgccacgagtact
gaagagaaggacaaaggcattgacttaaatccaataaagactggggatgccactactact
tcttcagaaacaggagaacgtggggtagcttttccctgcaccagcattgaggcagacgaa
ggcttcgtagtaggtgcatgccccataaacaatcccctcctgggccaggtggaagccagc
gaatgcactgtttttgctgcagctgaagagggtgggggtgttgtcacagaaggatttgct
gcaagtgaaactttcctcacaagtactaaggaaggagaaagtggagagtgttctgtggct
gagtcggaagacagagcagcaggtcccgtgactgctcatacagttaaaagtgaagccagt
atgaacagtgttgccgtagaagaaaaagatgatgccgtaaccagtgcaggttctgaagaa
aaatgtgatggttcttcaagcacagaccctgaaatagttgaaggaactgggacttttatt
agtgaaattgaaagtgatggtgcagttacaagtgccgggacagaaataggaatgggatct
atgagcagtgaagagattgataggtcccagggaaataggacaagaatgggtcccaagaaa
gaaacggagggcaccgtgacttgtacaggagcagaaggcagaaatgataactttgttatc
tgctcagtaactgaggcagggccccaggaggagcgcatggttacaggggcagatgtggtt
ctagtagataatgacacacccccaggaataagtgccaaccaagaaggagacggttcagtg
aatgacggtgctgaaggtgagagtgcggttaccagcacaggcataacggaagaagatgga
gagggaccagcaagctgcatgggctcagaagatagcggtgaaggctgtgctataagttct
gaaacagaagaaaatggagagggtgcaatggacagcacagtagccaaagaagtcactaat
gcaccattagttgctactggtccctgcgatgacgaaggcattgtgaccagcacaggtgca
aaagaggaggatgatgagggggagggcattgtgactagtaccggaagaggaaatgaaatt
ggacatgcttcaacttgcacaggaataggagaagaaagtgaaggggtgttgatttgtgaa
agtgcagaaggggacagtcagattggtcctacggtggagcatgtggatgctgaggctggg
gcaggcatcatgaatgcaaatgaaagtaacattgatagcatgagtggtgcagaaaaggaa
atcaaagacacggagatctgctccagtgctaaagggattgtagaaagcagtgtgaccagt
gcagttgccggaaagagtcaagtggcaccaattccacaaggttgtgaggatctcatgact
agtgcaacttctgatcaaagtgatagtcatctcaccaggaaagaaaaggttgacgatacc
agtatttctactggccttgttgggggcagtcatgaaattcttatatttggggcagtccca
gaatgtgaagttgaccacacatctccaagtgagaaagaagatgagagcatcatcacctct
gtagaaaatgaagagtgtaatggcctcatgactgctacagctggtggcaatatttccaac
caagatgatttagctgggggtaaaagtcaagggaaaggcttgatgatttccaccagtaca
agtgattacacctctcaggtgagcacagttgtagacatgggagaagggcattcacgtagt
ctgagaactgaggaaaatttggaaggcactagaataaacttggaagaatttgaggccccc
atgcccagtgcagtttcaggtgatgaaaaccaactcacagctaggagttgtgaagagaaa
gatgagtgtgctatgatttctacaagtataggggaagaatttgaaatgcctatttctagt
gcaacaaccatcaaatgtgcggaaagtcagcagccagttgcagtagttgaagagagagct
aaaggtccagtgttggtaagcactgaggactttgaggtccctatgcccagtgctcccaca
gaagttgaatgtcctcttgcctcaaccagcaaggaagacaaagacgaatgtgctctcatt
tccaccagcatagcagaagaatgtgaggcctctatttctggtgtaagtgaaaatgcacaa
tccattacagatgggagtgctattatctcaacgagctctgtggaagattgtgaaggcccc
gtgtcaagtgccgtccctcaggagaaagtccgtgccccagtcacaccagtggaagagtca
agtgacaccaccatgatttccacaagcacttctgaagggtgcgaagcagtcatgattggt
gctgtccctgcagatgaagaccaggccaccactgcaagggtagaagactcaggtgatgct
gccatcatctccaccagcacggcagagtgtgtgctgatggtcaccagcctagacagaccc
aaggagagtcagctggctgcaagcaaatcagaaggtaatgatggcctgccaaaggtgagc
aggtgcgagatccccttgccaagcctcattgctgagaataaccgtcagcgtcctgggccg
ttcacaggaggcaaagaagcaggcccccggttggcagtgagcacccaggaagggcacaat
cgactgtcactttgtgagccctccagagagcaaagccagccaagaactgaagctatagaa
gaggaagacagacatgacaaggactgccctgttcagggctcatttgcagcaagaggacaa
aatgaaaacactttgcacctcataaatgtagaagagaagaatgtaatgttgagctccatt
cagagaaaagacgaaagcccagagaaagagacagtaggaggcagtagcactaccagctgc
tctccagcaggaaggggctcagaaaaaagcgccacctcctccgtccatctgagaggactg
cagcagagggctggagacatctctgtcagtatttgttctttgtcagcagtaaataccggt
gctaaaaaggctgatgacatgctacctgtcaaagacactgccccagagtattctaatcct
cctgaccagcaggagcaggagggcaacttgaaaactaccaccaccaaatgtattactggc
caagagtcaaaaattgcttcctcccacccagtgagccttccagctgccagccatgtagct
cagtccttggctttaaaatgtgggaaggacttgaccacaaagagtgatcatagcagtaaa
caggctgtggaagcttctactgagaaaacaggtcatgggaatggcacacagaggtcattg
catggagaaggaaacgtagaggatgctgtttgtgtcgaacccagcgtgtgtgacataggt
aatgaagagtctccaccaaaagttttggaaggagcagaactgtcaacccacttcaaaaca
gagatacttgtgtcttcagggaaagagaaacatcagaacgttctagcaccaccagggact
gtgtgtggagctgaactacagaaggagctttcatcagtgaatgaatccctaaatgttgaa
aattcaggctcaagagcaaatgaagaagttcataatgaatcttacaaaaaatcagggata
tccagtggtggaaaagacaacacagaagccataagaggtcacagtgttgaagcaaattct
aaagaggtcgaagaggaagaaaggcatattcctaaaagaaaaagaaagaagaattatgct
tcctcagaagatgaactggatggtaattcagatgtcctggattccagaatagaaacaaca
cagaaacagtgctctgaaactgagccacaagacacaaaggaagaaaattctggagacttg
gacgaagtatccaaaacaaattccaagacaaacagcactgcttcaaggaccatggaagaa
aaagatgaacttagcagcagtgaggctaccagtgaaaaaccagagcagaatgaagatgat
agcatcaaatcacaggaggaagatcaaccaattattattaaaaggaaaagaggaagacct
cgtaaataccctgtagaaacagcattaaaaacgaaagatgactccaaaacagatactgtc
attgccactgtagaacattctccacctagcagcaaactgaaaatgatgcaaacagatgaa
tccaataaagaaacagctaccctacaagagagaagtataagcaatgacgatggtgatgag
aaaaccgtggcaagcgcacgtcggagaggaaggaagcccaagcgctcgctcactctgtcg
gacgatgctgaattctcagagccagaaagaaaacgccagaaatcagtttctgaagcaact
gaagacaaaaaagatcaggagtctgatgaggaagaggaagaagaggaagaggaagagccc
cttggagccaccacaagatccaccactagatcagaggcacagagatcaaagacacagctc
tccccttccaccaaacgcaagagagaagtcagtcctcctggagcccggacaagaggccag
cagagggtcgaggaagcccctgtgaagaaggcgaagcgataa
DBGET
integrated database retrieval system
