Sciurus carolinensis (gray squirrel): 124994667
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Entry
124994667 CDS
T08117
Name
(RefSeq) LIM and calponin homology domains-containing protein 1 isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ncar04990
]
124994667
Domain-containing proteins not elsewhere classified [BR:
ncar04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
124994667
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
124994667
NCBI-ProteinID:
XP_047422804
LinkDB
All DBs
Position
10:complement(107002967..107322372)
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AA seq
1655 aa
AA seq
DB search
MACPALGLEALQPLQPEPPPEPAFSEAQKWIEQVTGRSFGDKDFRTGLENGILLCELLNA
IKPGLVKKINRLPTPIAGLDNIILFLRGCKELGLKESQLFDPSDLQDTSNRATVKSLDYS
RKLKNVLVTIYWLGKAANSCTSYSGTTLNLKEFEGLLAQMRKETDDIESPKRSIRDSGYI
DCWDSERSDSLSPPRHGRDDSFDSLDSFGSRSRQTPSPDVVLRGSSDGRGSDSESDLPHR
KLPDVKKDDMSARRTSHGEPKSAVPFNQYLPNKSNQTAYVPAPLRKKKAEREEYRKSWST
ATSPLGGERPFSCPETIEEEGSEVGSPGEEDPTCQTDPGGKAPNGGLELPNLSGKEQPPA
EGASVAPAPASQDKDAAEIQKRRRLEQAGIKIMPAAQRFASQKQVNEEKETVRDIILRKE
NSFLTHQHGRDSESEDEVAHRLPDLEKDDFAARRARMNQTKPVVPLNQLLYGPYLKKDAE
KSDGSKQLSKGISEKKSLEYKRKQGQTEEMKSTGTCIMRAQGSEPVEEGLRKVPDLYKDD
LAQRRIQGSLGPHREVPSFITLSSITEADLQTWERLKVSEKTRDGDAQHICVPEPSPEIN
AETAIRDDFASRKARAYTKTSSPRQKFVHFGPVTEIDQQKWKRLSIGKAGPREDIEEVIT
HGNKIQNVSPDSAATSNLKEDQKLNPQNYCRTVTSGIDDHCKRLSWLASAPESQEEQVCN
LGECPRRTQEVTSEELPQACKEEKDGVDQRDSEMSQKTERSEEHSQPLACLLASEWKTSG
TEEKSEKATAPPWNGSGLKDQSKLSESQKDDMMTRRTGISPRHPGSNPNQFLPVPFAKQQ
DVEESVKGLPLNDPRYGPRTPVSDDAESTSMFDMRCEEEAAVLPHSRARQEQLQLINNQL
REEDDKWQDDLARWKSRRRSASQDLIKKEEERKKMEKLLAGEDGTSERRKSIKTYREIVQ
EKERRERELHEAYKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNFS
SFPNDPNPMKYLRQQSLPPPKFTATVETTVARASVLDTSMSAGSGSPSKTVTPKAVPMLT
PKPYSQPKNSQEVLKTFKVDGKISMNGETVHGDEEEKEKQDPTGVPAPTLTKSQMFEGVA
RVHGSPVEVKQDNNSIEINIKKPNSVPQQLVANNEETELSSQEDENDGGKPRKGNAELAS
SEPQHFTTTVTRCSPTVAFVEFSSSPQLKNEVPEEKDQKKPENEMSGKVELVLSQKVMKP
KSPEPEATLTFPFLDKMPETNQLHLPNLNSQESPGTASVPLRVQNSWRRSQFFSQSVDSP
SSEKSPATTPFKFWAWDPEEERRRQEKWQQEQERLLQERYQKEQDKLKEEWEKAQKEVEE
EERRYYEEERKIIEDTVVPFTVSSSSADQLSTSSSITEGSGTVNKMDLENCQDEEKERRQ
KKAFQGGDNDLLLKTREGDPLDEKDSLTQGPLADTETPIARGIHQEHQLDTETGAPHCGV
NPQLAQDLSQNQQISNTPMHMSEDVKPKTLPLDRNINHQIESPGERRKKSPRENFQAGPL
SPCSPTPPGQSPNRYKRSISGKKLCSSCGLPLGKGAAMIIETLNLYFHIQCFRCGICKGQ
LGDAVSGTDVRIRNGLLNCNDCYLRSRSAGQPTTL
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atggcttgtcctgctctcggtttggaagcgcttcagcccctgcagcccgagcctcccccc
gagcccgccttctccgaggcacagaagtggatcgagcaagtaactggcagaagttttggt
gataaagattttcgaacagggctagaaaatggaatccttctctgcgagttgctgaatgct
ataaagccaggacttgttaaaaagatcaatagattgcctacccccattgcaggattggac
aatatcatcttattcttgagaggttgtaaagagctcggccttaaagaatctcaactcttt
gacccgagtgacctccaagatacatccaacagagcaacggtcaagagccttgactatagt
aggaagctgaaaaatgtattagttaccatctactggctgggaaaagctgccaacagctgc
acgtcctatagcggaactaccttgaacctgaaggagttcgaaggattgttggcacagatg
agaaaggaaactgatgacattgagagtcctaaacgcagcatccgagacagtggctacatc
gactgctgggattccgagcgcagtgactctctctcccctcctcgccacggccgggatgat
tccttcgacagcctggactcctttggctcccgctccaggcagacaccttcgccagatgta
gtgctcaggggaagcagtgatgggagaggaagtgactctgaatccgacttgccgcatcgg
aagttgccagatgtgaagaaggatgacatgtctgcccggcggacttcccatggcgagccg
aaatcagcagtgccttttaaccagtacctcccaaacaaaagcaaccagacagcctacgtc
ccagctcctctgagaaagaagaaagcagagcgagaggaataccggaagagctggagcacc
gccacctcccccctgggcggggagaggcccttcagttgtcctgaaacaatagaggaagag
gggagcgaagtggggtctcctggtgaagaagacccaacctgccaaacggatcctggtggg
aaggctcccaatggtggtttagaattacccaacctcagtgggaaggagcagcctcctgca
gagggggcttcggtggcaccagctcctgcgtctcaagacaaagatgctgctgaaatccaa
aaacgcagaaggctagagcaagctgggatcaagatcatgccagcagcgcagcgctttgcc
agtcaaaagcaagtaaatgaagagaaagaaactgttcgtgatattatccttcgcaaagaa
aattctttcctgacccaccaacacggcagagattccgaatcagaagatgaggttgcacat
cgactgcccgaccttgagaaagatgactttgctgcaagaagagcgaggatgaaccaaacc
aagccagtagtgccattgaatcagctcctctatgggccttatcttaagaaagatgcagag
aaatcagatggcagcaaacagctctcaaaggggatctcagaaaagaaaagtctagaatat
aaaagaaagcagggccaaacagaagagatgaagtcaaccgggacctgtattatgcgagct
caggggagtgaaccagtggaagagggactcaggaaggtcccagacctgtacaaggatgac
ctggcccagaggagaattcagggcagtcttggtccccaccgggaggtgcccagcttcatc
acactctccagcattacagaggctgacttgcagacatgggagagactgaaggtttcagaa
aagacaagggatggagatgctcagcacatctgcgtccctgagccttcacctgaaatcaat
gcagaaaccgccatccgtgatgattttgccagccgcaaagccagggcctacacaaaaact
tccagccctaggcaaaagtttgtgcactttgggccagtgacagaaatagatcagcagaaa
tggaagcggctcagcattggcaaggcggggcctagggaggatatagaagaagttatcact
catggcaacaagattcaaaatgtgtcccctgactcagcagctacttccaacttaaaggaa
gaccaaaagcttaatccacaaaattactgcaggacagtgacttctggcatagacgaccat
tgcaaaagactctcgtggctggcttctgcgccagagtctcaggaagagcaggtctgcaat
ttgggcgagtgcccaaggaggacacaggaagttacatccgaagagctgccacaggcttgc
aaagaagaaaaagatggagttgatcaaagggattctgagatgtcacaaaagacagaaaga
tcagaggagcacagccagcccctagcatgccttctggcctctgaatggaagacttctggg
acagaagagaagtcagagaaagcgacagctcctccctggaatggcagtggactgaaagac
caaagcaagttgtctgagtcacaaaaagatgacatgatgacaaggagaactgggatatcc
cctagacaccctggatccaacccaaaccagttccttccggttccgtttgcaaagcagcag
gatgtggaggaatctgtaaagggtctgcccctgaatgatccaagatacggtccgagaact
cctgtgtcagatgacgcagagagcacgagtatgtttgacatgcggtgtgaggaggaggcc
gcggtgctgccgcacagcagggcccgccaggagcagctgcagctgataaataaccagctg
agggaagaggacgacaaatggcaagatgacctggctcgttggaagagtcgtagaagaagt
gcctctcaggacttaatcaagaaagaagaagaaaggaaaaaaatggagaagttactggcg
ggagaagatgggacaagtgaacgaaggaaaagcatcaaaacctacagagaaattgttcaa
gaaaaagagcggagagagagggagttgcatgaggcatataagaacgcgcggtcccaggaa
gaggcagagggaatccttcagcagtacatcgagcggttcaccatcagtgaggctgttctc
gaacgcttggagatgccaaaaattctggaaagaagccattcaacagagccaaacttctca
tccttcccgaatgacccaaaccctatgaaatacctacggcaacagtcactgcctccaccc
aaattcactgccactgttgaaaccaccgttgctcgtgccagtgttctggacaccagcatg
tcagctggcagtgggtctccaagcaaaactgtcacccccaaagcagtgcctatgctgaca
cccaagccttactcccagcccaaaaactctcaggaggttctgaagacctttaaggtagat
gggaaaatcagcatgaatggagagacggtccacggagatgaggaggaaaaggagaaacag
gaccccacaggggtgcctgctcccaccctaaccaaatcccagatgtttgaaggtgtggct
agagtacatgggtccccagtggaggtgaaacaggataacaatagcattgagatcaacatc
aagaagccaaattctgttccccagcaactggtggcaaacaatgaggaaactgaactcagc
agccaagaggatgagaatgatggtggaaaaccaagaaaagggaatgcagaacttgcctcc
tcagagccgcagcatttcacaacaacggtgactcgatgcagcccaactgtggcctttgtg
gagttctcctccagcccccagctaaagaacgaggtgccagaagaaaaagaccagaagaag
ccagaaaatgaaatgagcggaaaggtggagctagtgctatcacaaaaggtgatgaagcca
aaatccccagaaccagaagcaaccctgacatttccatttttggacaaaatgcctgaaacc
aaccaactacatttgccaaatctcaattctcaagagtcgcctggcactgccagtgttccg
cttagagttcagaactcttggcgacgttcccagtttttctcccagtcagtagattctcca
agcagtgaaaaatcacctgcaactacaccttttaagttctgggcatgggacccagaagag
gagcgcaggcgacaggaaaagtggcagcaggagcaggaacgtttgctccaggagagatac
cagaaggagcaggacaagctgaaggaagagtgggaaaaggcccaaaaggaggtggaagag
gaagaacgcagatactatgaggaggagcgtaagatcatcgaagacactgtggttccattc
actgtttcttcaagttccgcagaccaattgtctacatcctcctctatcaccgaaggcagc
gggacagtgaataaaatggacttggaaaactgtcaagatgaagagaaagagagaagacag
aagaaagcattccaggggggtgacaatgacttattgcttaagactagggaaggggatcca
ctggatgaaaaggacagcctaactcaaggacccttggctgacactgagactcccatagca
agaggaatccatcaagaacatcagctggatacagagactggtgctccacactgtggggtg
aacccacagctagctcaggatctatcccagaatcaacagatatcgaacacaccaatgcac
atgtcggaagatgtgaagccaaaaaccctcccattggatagaaacattaaccatcagatt
gagtctccgggtgaaaggcgaaagaaaagccctcgagagaacttccaggctgggcccttg
tccccctgttctcccacccctcctggccagtcaccaaacaggtacaagaggtctataagc
gggaagaagctgtgctcttcctgtgggcttcctttgggaaaaggagctgccatgatcatc
gagaccctcaatctctactttcacatccagtgttttaggtgtggaatttgtaaaggacag
cttggagatgcagtgagcgggacggatgttaggattcgaaatggtcttctgaactgtaat
gattgctacctgcgatccagaagtgctggccaacctacaacattgtga
DBGET
integrated database retrieval system
