Niveispirillum cyanobacteriorum: C0V82_05045
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Entry
C0V82_05045 CDS
T05262
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ncb
Niveispirillum cyanobacteriorum
Pathway
ncb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C0V82_05045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncb03019
]
C0V82_05045
03009 Ribosome biogenesis [BR:
ncb03009
]
C0V82_05045
Enzymes [BR:
ncb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C0V82_05045
Messenger RNA biogenesis [BR:
ncb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C0V82_05045
Ribosome biogenesis [BR:
ncb03009
]
Prokaryotic type
rRNA processing factors
C0V82_05045
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AUN29661
UniProt:
A0A2K9N937
LinkDB
All DBs
Position
eg_1:1127914..1130964
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AA seq
1016 aa
AA seq
DB search
MAKRMLVDATHPEETRVVVVNGNRLEELDFEIASRKQLKGNIYLARVIRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYRIPVADREALLREQQELAEEREARAERGEDLDDNGHVEDAP
PAPPPEEIGGAAPAPIVADDAGEPVGVDDGHDVVETGDAEGVPADEEHAGGDADGETADA
GEAGSPFVHSSGRGRERSRRYRPQAAQTESNDESVEEEVEERQPQQQRRRPLKSYKIQEV
IKRRQILLVQVTKEERGNKGAALTTYLSLPGRYAVLMPNTPRGGGISRKITNPADRKRLK
EMLEDFDIPSGMSVILRTAGIERSKPEIRRDLEYLMRLWDSIRETTLQSVAPALIYEEAN
LIKRTIRDLYSSDIDEVHVEGEAGFRVAKDFMRMLMPSHAKKIQLYNDPSIPLYHRFQVE
GAIETMFNPIVQLRSGGYIVINQTEALVAIDVNSGRSTKERNIEETALRTNLEAAEEVAR
QLRLRDLAGLVVVDFIDMEDPRNNSAVEKRVKDAMKADRARIQLGRISAFGLLELSRQRL
RPSLQEINFERCPHCQGTGMVRSLESAALAVLRAVEEEGIRKRSAEITVTCASHVTLYIL
NHKREALADIERRHGLRVYLQGDDNLIGPSHQIDRIRARTAADDIVAAAPVSAERVMAQT
ERAIEIEEAEVEAEATEIDAEGEEEEAKPQVRTEGRGDRDGDRDGRGRRRRRRRRRGERG
ENGSSPEAGDSEGDDEADGEEGDAPAEGEAVQAEVVAEGDTTAPAAGEDDEAARAKKRRR
GKRGGRRRGRRGEDGVTDGAGDEGEDDGEGDEQGADEAPVVAEAAAPAAEPVAEAAPAVT
EEAPAAPAEEAPAPKKRATRSRKKVAEAEAAPAEAPVEAPAAVEAAPVVTEEAAAPAEEA
TAPKKRATRSRKKVAEADAAPAEVPAAVEAPVVVEEAPAAPVDEAATPKKRASRPRKKVA
EAEAAPVETVTEVAAEAAPAAAPVEEAAPAPTPAELATEVNPTVEKPKRGWWSRKS
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcgtatgcttgtcgatgccacgcatccggaggaaacccgggttgtcgtggtt
aatggtaaccgcctggaagagcttgatttcgagatcgcctccaggaaacagcttaagggc
aatatctacctcgcccgtgttatccgggttgaaccgtcacttcaggcggcgttcgttgaa
tatggcggcaaccgccacggctttctggccttctctgaaatccatcccgactattaccgg
atcccggtcgccgaccgtgaggcactcctgcgcgaacagcaggaactggcggaagagcgg
gaggcccgtgccgaacggggcgaagacctggacgataatggccatgtcgaggatgcgcct
cccgccccgccgcccgaggaaatcggcggcgccgccccggcccccatcgtggcagacgat
gccggcgagccggtaggcgtcgatgacggccatgatgtggtggaaaccggcgacgccgaa
ggcgtgccggcggatgaggaacatgccggcggcgatgccgatggcgaaaccgccgatgcc
ggtgaagccggctcaccgtttgtgcattcgtcgggccgtggccgggaacgttcccgccgc
tatcgtccgcaggctgcacagaccgaaagcaatgacgagagcgttgaggaagaagtggaa
gagcggcagccgcagcagcagcgccgccgcccgctgaaatcttacaagattcaggaagtt
atcaagcgccgccagatcctgctggtgcaggtgacgaaggaagaacgtgggaataagggc
gctgccctgacgacctatctgtcgctgcctggccgctatgccgttctgatgcccaacacg
ccgcgtggcggcggcatcagccgcaagatcaccaacccggccgaccgcaagcgcctgaag
gagatgctggaggatttcgacattccgtcgggcatgtcggtcatcctgcgcaccgcgggc
atcgagcggtcgaagccggaaatccgccgcgatcttgaatatctgatgcgcctgtgggac
agcatccgcgagacgacgctgcaatccgtcgcgccggcgctgatctatgaggaagcgaac
ctcatcaagcgcaccatccgcgacctttattccagcgacattgacgaagtgcatgtcgag
ggtgaggctggcttccgcgtggccaaggacttcatgcgtatgctgatgcccagccacgcc
aagaagatccaactttataacgatccctcaatcccgctctaccaccggttccaggtggaa
ggcgccattgagacgatgttcaacccgattgtacagctgcgttcgggcggctacatcgtt
atcaaccagaccgaagcgctggtcgccattgacgtcaattcgggccgctccaccaaggaa
cgcaatatcgaagagacggcactgcgcaccaatctggaagccgctgaggaagtggcccgt
cagctgcgcctgcgcgatctggccggtctggtcgttgtcgatttcatcgacatggaagac
ccgcgcaacaattccgccgttgaaaagcgtgtaaaggacgcgatgaaggcggatcgcgcg
cgcattcagctggggcgcatctccgccttcggtctgctggaactgtcgcggcagcgtctg
cgcccgtccttgcaggaaatcaacttcgaacgctgcccacattgccagggcaccggcatg
gtccgcagcctggaaagcgctgccctggccgtgctgcgcgcggtcgaggaagagggtatc
cgcaagcggtcagcagaaatcaccgtcacctgcgccagccatgtcacgctctatatcctc
aaccacaagcgcgaggcgctggcggatatcgagcggcgccacggcctgcgcgtctacctg
cagggtgatgacaatctgatcggccccagccatcagattgaccgtatccgcgcgcgcact
gccgccgacgacattgtcgccgccgcaccggtcagcgccgagcgcgtgatggcccagacc
gaacgcgccatcgagatcgaagaagcagaggtcgaggccgaagccacagagatcgatgcc
gagggcgaggaagaggaagccaagcctcaggttcgtaccgaaggccgtggtgaccgcgat
ggcgaccgtgacggtcgtggccgccgccgccgccgtcgccgccgccgtggtgagcgcggc
gagaatggcagttcgccggaggccggtgacagcgagggagacgacgaggccgatggtgag
gagggtgatgctcctgccgaaggtgaagccgtccaagccgaggttgttgccgaaggtgac
accaccgctcccgccgctggcgaggatgatgaggcggcccgcgccaagaagcgtcgtcgt
ggcaagcgtggtggtcgccgccgtggccgccgtggcgaagatggcgtgaccgatggcgcc
ggcgatgagggcgaggatgatggcgaaggcgatgaacagggtgccgacgaggcaccggtt
gtcgccgaagcagcagcacccgctgccgagccggttgcagaagctgctcccgcagtgacc
gaagaagcccctgccgccccggcagaggaagctccggcaccgaagaagcgcgccacacgc
agccgcaagaaggttgcggaagccgaggcggcacccgccgaagccccggttgaggcacct
gccgctgtcgaagccgctcctgtcgtgaccgaggaagccgctgcaccagcggaggaagct
acggcaccgaagaagcgtgcgacccgcagccgcaagaaggttgcggaagccgacgcggca
ccggcagaggttcccgccgctgtcgaagcccccgtcgtggtcgaggaagcccccgccgca
ccggtggacgaagccgcgacaccgaagaagcgggcatcgcgtccccgcaagaaggtggca
gaggccgaagccgcacctgttgagaccgtgacggaagtggccgccgaggccgcccccgcc
gccgcaccggtggaggaagctgcaccggccccgacgccggctgagctggccaccgaggtg
aacccgacggtggagaagcccaagcgcggttggtggagccgcaagtcgtaa
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