Niveispirillum cyanobacteriorum: C0V82_06665
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Entry
C0V82_06665 CDS
T05262
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ncb
Niveispirillum cyanobacteriorum
Pathway
ncb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ncb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C0V82_06665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncb03021
]
C0V82_06665
Transcription machinery [BR:
ncb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C0V82_06665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
EFhand_Ca_insen
Motif
Other DBs
NCBI-ProteinID:
AUN29944
UniProt:
A0A2K9NA23
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All DBs
Position
eg_1:complement(1483570..1485519)
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AA seq
649 aa
AA seq
DB search
MATKAAQTAEVSEQREEEANGPLMDGMAIAVKKMIARGKERGYVTYDELNAALPPDSSSS
EQIEDTMALLSEMGINVVEAEEADESSGNEGEGEGRQSGNLDDDDIGRTDDPVRMYLREM
GSVELLSREGEIAIAKRIEAGREMMIGAICESPLTIQAIIEWHQSLQDGKMLLRDIIDLD
ASYGVDPEAGELPPEALDGPAAEREEEEAERPEGEGGPAAEGEGEEEGNVSLSAMEAELK
PKVLEIFGKIEETYERLHKMQEERLSLLQSGQELPKGSDKKYDKVKAELTELVNSVRLNN
GRIEQLVEQLYALNRKLLGFEGRLLRLATDCRVKREDFLQHYYGSELDPKWLDRCKSISK
AWAKFAERSSYEVGRVRESIAEVSSQARLPIGEFRRIVSTVQKGEKEASRAKKEMVEANL
RLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIA
DQARTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAERLMMPLEKVRKVLKIAKEP
ISLETPIGDEEDSHLGDFIEDKNAVLPLDAAIQANLRETTTRILATLTAREERVLRMRFG
IGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDT
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaaagcggcgcagacggcagaagtgtcggagcagcgggaagaggaagccaat
ggccctctgatggacggcatggccattgccgtcaagaagatgatcgcgcgcggcaaggag
cgtgggtacgtcacctatgacgaactcaacgcggctttgccgccggacagctcctcgtcc
gaacagatcgaagacacgatggctttgctgtccgaaatgggcatcaatgtcgtcgaggcc
gaagaagccgatgagagcagcggcaacgaaggtgaaggcgaaggccgtcagtccggtaac
ctggacgatgacgatatcggccgcaccgacgatcctgtgcgcatgtatctgcgcgaaatg
gggtcggtggagctgctgagccgcgagggcgaaatcgccatcgccaagcgcatcgaggcc
ggccgggagatgatgatcggcgcgatctgtgaatcgccgctgaccattcaggccatcatc
gaatggcatcagtcgttgcaggacggcaagatgctgctgcgcgacatcatcgatctggac
gcctcatatggcgtggacccggaagccggtgagctgccgcccgaagcgctggacggtccc
gccgccgagcgtgaagaggaggaagccgagcggcccgagggtgaaggtggtcccgccgcc
gaaggcgagggtgaagaggagggcaatgtttccctctccgccatggaagccgagctgaag
cccaaggtgctggagatcttcggcaagatcgaggaaacctatgagcgcctgcacaagatg
caggaagagcgcctgagcctgctgcagagcggccaggagctgcccaagggttccgacaag
aagtacgacaaggtgaaggccgaactgaccgaactggtcaattccgtgcgcctgaacaat
ggccgtatcgaacagctggtcgaacagctctatgcgctcaaccgcaagctgctgggcttt
gaaggccgtctgctgcgtctggccaccgattgccgggtaaagcgcgaagacttcctgcag
cactattacgggtcggaactggacccgaaatggctggatcgctgcaagagcatctccaag
gcctgggccaagttcgccgagcgttcgtcgtatgaggtgggccgcgttcgtgagagcatc
gcggaagtgtccagccaggcgcgtctgcccatcggtgagttccgccgcatcgtctccacg
gtgcagaagggcgaaaaggaagccagccgcgccaagaaggagatggtggaggccaacctg
cgcctcgtgatctccatcgccaaaaagtacacgaaccgtggcctgcagttcctggacttg
atccaggaaggcaatatcggtctgatgaaggccgtggataagttcgagtatcggcgcggt
tacaagttctccacctacgccacctggtggatccggcaggcgatcacccgttcgatcgcc
gatcaggcccgcaccatccgtattcccgtgcacatgatcgagacgatcaacaagctggtg
cgcaccagccgtcagatgctgcacgagatcggacgcgagccgacgccggaggaactggcc
gagcgtctgatgatgccgctggaaaaggtccgcaaggtcctgaagatcgccaaggagccg
atcagccttgagacgccgatcggcgacgaggaggattcgcatctgggtgatttcatcgag
gacaagaacgccgttctgcccctcgatgccgccatccaggcgaacctgcgcgagaccacg
acccgtatactcgctacgctcaccgcccgtgaagaacgcgtgctgcgcatgcgcttcggt
atcggcatgaacaccgaccataccctggaagaggtgggtcagcagttcagcgtgacgcgc
gaacgtatccgccagatcgaggccaaggcgcttcgcaagctgaagcacccgtccaggagc
cgcaagctgcgcagcttcctggatacgtga
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