Niveispirillum cyanobacteriorum: C0V82_15085
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Entry
C0V82_15085 CDS
T05262
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ncb
Niveispirillum cyanobacteriorum
Pathway
ncb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ncb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C0V82_15085 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncb03021
]
C0V82_15085 (rpoC)
03400 DNA repair and recombination proteins [BR:
ncb03400
]
C0V82_15085 (rpoC)
Enzymes [BR:
ncb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C0V82_15085 (rpoC)
Transcription machinery [BR:
ncb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C0V82_15085 (rpoC)
DNA repair and recombination proteins [BR:
ncb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C0V82_15085 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AUN31410
UniProt:
A0A2K9NE35
LinkDB
All DBs
Position
eg_1:3245366..3249652
Genome browser
AA seq
1428 aa
AA seq
DB search
MNTELMNIFGTPQGPQSFDQIRISIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKS
LPSRIGLLLDNTLKDLERILYFENYVVIEPGLTELKQGQLLSEDELIDFQDKYGEDTFTA
KIGAEALKDMLSSLDLVTEKANCRDDLRETSSEAKRKKLVKRLKMLEAFLGNPVEVETVA
DYERFEGYKERIERADGPTIYKTYPEATRPEWMILEVVPVIPPELRPLVPLDGGRFATSD
LNDLYRRVINRNNRLKRLIELKAPDIIVRNEKRMLQEAVDALFDNGRRGRVITGANKRPL
KSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKKMALELFKPFIYAK
LELYGLASTIKAAKRMVEKERPEVWDILEEVIREHPVMLNRAPTLHRLGIQAFEPTLIEG
KAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILSPASGRPIIVPSQ
DIILGLYYITMELPGAVGEGMAFGSIGEIEHALAAKVVTLHSKIQARYHTVDSEGNPITT
RVTATPGRMLLSEILPRHPAIKFDLINRLLTKKEIGNIIDVVYRHCGQKETVIFADRMMR
LGFTNAFKAGISFGKDDMVIPAEKEILVKEAQDRVKEFEQQYLDGLITQGEKYNKVVDVW
SETTEKVAGAMMKVIEQPRPGLGVNSVYMMAHSGARGSPAQIKQLAGMRGLMAKPSGEII
ETPIISNFKEGLSVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDAIITETDCG
TKNGLTVKAVIDGGDVIVPLSERILGRTSTVDLVNTLTGEMIVPAGELITERELELIDAA
GIDTVHIRSVLTCETEDGVCAHCYGRDLARGTRVNMGEAVGVIAAQSIGEPGTQLTMRTF
HIGGAAQRGAEQSFIEATLDAKVIVRNRNLVMNSEGVPVVMGRNCELALLDEQGRERAKH
RVPYGAKLNKALAVDGAPIKRGDRLAEWDPYTLPILTEREGTATYVDLVEGISVREVMDE
ATGISSKVVVDWRQQPRGADLRPRIALVDANGEIVKLPNGTEARYFMSVDAILSVENGAK
VQAGDVLARIPRESSKTRDITGGLPRVAELFEARRPKDFAIIAEIEGRVEFGKDYKTKRR
IVVKNDETGEEREYLIPKGKHIAVQEGDYVQKGDSLMDGSPVPHDILSVMGVEALANYLI
NEIQDVYRLQGVKINDKHIEVIVRQMLQKIEVSDPGDTTLLIGDQVDRVEFEQENRAVQQ
RIKEGEVDLRFAQGKPVLQGITKASLQTRSFISAASFQETTRVLTEAAVQGKVDNLEGLK
ENVIVGRLIPAGTGSVVNRLKAIAAERDRAMQMGEDGETPALPEAAAE
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgaataccgaattgatgaacatcttcggcaccccgcagggtccgcagagcttcgaccag
atccgcatctcgatcgccagcccggagcgcatccgctcctggtcgttcggcgagatcaag
aagcccgagacgatcaactaccggaccttcaagccggagcgcgacggcctgttctgcgcc
cgcatcttcggtccgatcaaggattacgagtgcttgtgcggcaagtacaagcgcatgaag
tatcgcggcatcatctgcgaaaagtgcggcgtggaagtgaccttgtccaaggtccgccgc
gagcgcatgggccatatcgaactggcctcgcccgttgcccatatctggttcctgaagtcg
ctgccttcccgtatcggcctgttgctggacaacacgctgaaggatctggagcgcatcctt
tatttcgagaactatgtcgtcatcgaacccggcctgaccgagctgaagcagggtcagttg
ctgtctgaagacgagctgatcgacttccaggacaagtacggcgaagacacgttcaccgcc
aagatcggtgccgaggccctgaaggacatgctgtcctcgctggacctggtcacggagaag
gcgaactgccgtgacgacctgcgcgagacctcgtcggaggccaagcgcaagaagctcgtc
aagcgtcttaagatgctggaagccttcctgggcaacccggttgaagttgagacggtcgcc
gattacgagcggttcgaaggctataaggagcgcattgagcgcgccgacggcccgaccatc
tacaagacctacccggaagcgacgcgcccggaatggatgatcctggaagttgttccggtc
attccgcccgaactgcgtccgctggtgccgctggatggtggtcgtttcgcgacgtcggat
ctgaatgatctgtaccgccgcgtgatcaaccgtaacaaccgtctgaagcgtctgatcgag
ctgaaggccccggacatcatcgtccgtaacgaaaagcgcatgctgcaggaagctgtggac
gcgctgttcgacaatggccgtcgcggtcgcgtcatcaccggtgctaacaagcgtccgctg
aagtccatcagcgacatgctgaagggcaagcagggccgcttccgtcagaacctgctgggt
aagcgcgtcgattattccggtcgttcggttatcgtcgtgggtccggagctgaagctgcac
cagtgcggcctgccgaagaagatggcgcttgagctgttcaagcccttcatctacgccaag
ctggaactgtacggtctggctagcacgatcaaggccgccaagcgtatggtggaaaaggaa
cgtcccgaggtctgggacatcctggaagaggtcatccgcgagcatcctgtgatgctgaac
cgcgcaccgaccctgcaccgtcttggcatccaggcgtttgagccgaccctgatcgaaggc
aaggccatccagctccatccgctggtctgtaccgccttcaacgccgactttgacggcgac
cagatggccgtgcacgtccccctgagccttgaggctcagctagaagcgcgcgtcctgatg
atgtcgaccaacaacatcctgtcgcccgcctcgggccgtcccatcatcgtgccgtctcag
gacatcatcctgggtctgtactacatcacgatggaactgcccggtgccgtgggcgagggc
atggccttcggctctatcggtgagatcgagcatgcgctggccgcgaaggtggtcacgctg
cattccaagatccaggcccgctatcacactgtggacagcgaaggcaatccgatcaccacc
cgcgtgacggccaccccgggtcgcatgctgctgtcggagatcctgccccgccatccggcc
atcaagttcgacctgatcaaccgccttctgaccaagaaggaaatcggcaacatcatcgac
gtcgtctaccgccattgcggtcagaaggagacggtgattttcgccgaccggatgatgcgt
ctgggcttcaccaacgcgttcaaggcaggcatctccttcggtaaggatgacatggttatc
ccggccgagaaggagattctggtcaaggaagcccaggaccgtgtgaaggagttcgagcag
cagtatctggacggtctgatcacccagggcgagaagtacaacaaggtggtcgacgtctgg
tcggaaaccaccgaaaaggtcgccggcgcgatgatgaaggtcatcgagcagccgcgtccg
ggcctgggtgtgaattcggtctacatgatggcccattccggtgcccgtggttcgccggct
cagatcaagcagttggccggtatgcgcggtctgatggccaagccgagcggtgagatcatc
gagacgccgattatctccaacttcaaggaaggcctgtcggttctggagtatttcaactcc
acccacggtgcccgtaagggtctggctgacaccgccttgaagacggcgaattccggttac
ctgacccgtcgtctggtggacgtggcgcaggacgccatcatcaccgagacggattgcggc
acgaagaacggcctgaccgtgaaggcagtgattgatggcggcgacgttatcgttccgctg
tcggagcgtatcctgggccgtacctctactgtcgacctggtcaatacgctgaccggcgag
atgatcgtgccggctggcgagctgatcaccgagcgtgagcttgagctgatcgatgctgcc
ggtatcgatacggtccatatccgttcggtgctgacctgcgaaaccgaagatggcgtgtgc
gcccattgctacggccgtgacctggcccgtggtacgcgggtgaacatgggcgaggccgtg
ggcgtcatcgccgcacagtcgatcggtgagccgggcacgcagctgacgatgcgtacgttc
cacatcggtggcgcggcacagcgtggcgcggagcagagcttcatcgaagcgacgctggac
gccaaggtgatcgtgcgtaaccgcaacctcgtcatgaacagcgagggtgtgccggtggtg
atgggccgcaactgcgagctggcgctgctggatgagcagggccgcgagcgcgccaagcac
cgtgttccttatggcgccaagctgaacaaggcgctggcggttgatggcgctcccatcaag
cgcggtgaccgcctggccgaatgggacccctacaccctgccgatcctgacggaacgcgag
ggtacggcaacctatgtggacctggtggaaggcatctcggtccgcgaagtcatggacgaa
gccaccggcatctcgtccaaggtggtggtcgactggcgtcagcagccgcgcggtgcggac
ctgcgtccgcgcatcgctctggtggatgccaatggtgagatcgtcaagctgccgaacggc
acggaagcccgctacttcatgagcgtggatgccatcctgtcggtggagaatggcgcgaag
gtccaggccggtgacgtgctggcccgtatcccgcgtgaaagctccaagacgcgtgacatc
accggcggtctgccgcgcgtggccgagctgtttgaagcccgccgtcccaaggacttcgcg
atcatcgcggagatcgagggccgggtggagttcggcaaggactacaagaccaagcgccgc
atcgttgtgaagaatgacgagacgggggaagagcgcgagtacctgatcccgaagggcaag
cacattgccgttcaggagggcgactatgtccagaagggcgacagcctgatggatggtagc
ccggtgccgcacgacatcctgtcggtcatgggcgtcgaagcgctggcgaactacctgatc
aatgagatccaggacgtctatcgtctgcagggcgtgaagatcaacgacaagcacattgaa
gtgatcgtccgtcagatgctgcagaagatcgaggtctccgatccgggtgacaccaccctg
ctgatcggtgatcaggttgatcgggtggagttcgagcaggagaaccgcgccgttcagcag
cggatcaaggaaggcgaagtcgatctgcgctttgcgcagggcaagccggttctgcagggc
atcaccaaggcgtcgctgcagacccgttccttcatctctgccgcgtcgttccaggaaacg
acccgcgtcctgacggaagctgccgtccagggcaaggtcgacaatctggaaggcctgaag
gagaacgtgattgtcggtcgtctgatcccggccggtaccggctcggtcgtcaaccgtttg
aaggccatcgctgccgagcgcgaccgcgccatgcagatgggcgaagacggcgaaacgccg
gctctgccggaagcggctgccgagtaa
DBGET
integrated database retrieval system
