Niveispirillum cyanobacteriorum: C0V82_24050
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Entry
C0V82_24050 CDS
T05262
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ncb
Niveispirillum cyanobacteriorum
Brite
KEGG Orthology (KO) [BR:
ncb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncb03019
]
C0V82_24050 (hrpB)
Enzymes [BR:
ncb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C0V82_24050 (hrpB)
Messenger RNA biogenesis [BR:
ncb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C0V82_24050 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
AAA_30
HA2_N
ResIII
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AUN33429
UniProt:
A0A2K9NK21
LinkDB
All DBs
Position
unnamed1:726010..728505
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AA seq
831 aa
AA seq
DB search
MPDFPALPIDEALPALLSALNSGTTAVLQAPPGAGKTTRVPLALLDQAWAAHGRIIMLEP
RRLAARGAARRMAQMLGEEVGQTVGYRVRMDARVSATTRIEVVTEGIFLRRLQSDPSLDG
VAAVLFDEFHERSLDADLALAFCLQTRELLRDDLRLVVMSATLDGGPVAALLGGAPLITS
EGRAFPVETRWVEPGPTDRADEHMARTIRRALADEDGSVLAFLPGSGEIRRVERLLADGP
LPANVLLTPLYGDMSLEAQDIAIRPAPAGQRKVVLATSIAETSLTIEGIRIVIDSGLSRL
QRFDPRSGMGRLETVKSSRASADQRRGRAGRLSAGVCYRLWSEASDRALIPFTAAEITRA
DLTPLALELAQWGIIDADELSWLDSPPAATLTQARKLLQQLGAIDDALRITAHGKAMAGL
GVHPRLAHLVLRGKELGRTRLACRIAALIGERDILRGGGRRDADLRTRLEHLDERGRGGD
VDRGALHQVLEQARQLERQVGGPTGPVDHDDAGLLLALAYPDRIGQRRAGAAGQFRLSGG
RGAMLDPTDALAAADLLAVADLDGQGRDARIFLAAPVTQGALEEAFADDIRAETEVVWDG
REQIVQARRRRRLYELSLKDEPLSNPPADLVLPAMLEGVRAMGLSCLPWGKELEGWRRRV
NFLHRASPDRWPDVSDDGLLATLEDWLAPYLSGVTRRSHLDRVDLHSALTGILDWNQRQA
MDAEIPTHLTVPTGNRIPIDYSGEEPVLAVRLQELFGLAETPRLGGGRIPVLLHLLSPAH
RPVQVTRDLAGFWSGSYKDVKKELAGRYPRHYWPDDPLIAEPTARAKRRGT
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgcccgactttcccgcccttcccattgatgaagccctgccggccctgctgtcggcgctg
aacagcggcacgaccgccgtgttgcaggccccgccgggcgccggcaagaccacgcgggtg
ccgctggcgctgctggatcaggcatgggccgcccatggccgcatcatcatgctggaaccc
cgtcgtctggccgcacgcggtgccgctcggcggatggcgcagatgctgggggaggaggtg
gggcagacggtcggctaccgggtacgcatggatgcccgggtgtcggcgacgacccggatt
gaggtggtgacggaagggattttcctgcgccgcctgcaatcggacccgtcgctggatggg
gtcgcggcggtgctgttcgatgagtttcacgagcgcagcctggatgccgatctggcgctg
gccttctgcctgcagacgcgcgaattgctgcgtgatgatctgcggctggtggtgatgtcg
gcgacgctcgatggcgggccggtggcggcgttgctgggtggcgcgccgctgattacgtcg
gaaggccgcgcctttccggtggagacgcggtgggtggagccggggccgaccgaccgcgcg
gatgagcatatggcgcgcacaatccgccgggctctggctgatgaagatggctccgtcctg
gcctttctgcccggcagcggggagatccggcgggtggagaggctgctggccgacggtccc
ctgcccgccaatgtcctgctgaccccgctttatggcgatatgagcctggaggcccaggac
atcgccatccgcccggccccggcgggtcagcgcaaggtggtgctggccacaagtatcgcc
gagaccagcctgaccattgagggtatccgcatcgtcattgatagcggcctgtcgcgtctg
cagcgctttgatccacgcagcggcatgggacggctggaaaccgtgaaatcatcccgcgcg
tcggcggatcagcgccggggccgcgccgggcgtctgtcggcgggtgtctgttaccggtta
tggtcggaggctagcgaccgcgctctgatcccctttaccgccgccgagatcacgcgcgcc
gacctgacgccgctggccctggaactggcacaatgggggattatcgatgcggatgagctg
tcgtggctggacagcccgcccgccgcgacgctgacccaggcgcgcaagctgctgcaacag
ctgggtgccattgacgatgcgttgcgcatcacggcacacggcaaggccatggcggggctg
ggtgtgcatccgcgtctggcgcatctggtgctgcgcggcaaggaactgggtcgcacccgt
ctggcctgtcgcatcgccgccctgatcggggagcgggatattctgcgcggcggcgggcgg
cgggatgccgacctgcgcacccgtctggaacatctggatgaacgcgggcgcggtggcgat
gtcgatcgcggcgccctgcatcaggtattggaacaggcgcggcagctggaacggcaggtg
ggtggaccgacggggccggtagatcacgacgatgccggcctgctactggcactggcctat
cccgaccggatcgggcagcggcgggcgggggcggcgggacagttccgcctgtccggcggg
cgcggggccatgctggacccaaccgacgcgctggccgccgccgacctgctggccgtggct
gatctggatggccagggacgggatgcccgcatcttcctggcggcaccagtcacgcaaggc
gcattggaagaagcctttgccgacgatatccgggccgagacggaagtggtgtgggacggg
cgcgaacagattgtgcaggcccgccggcgacggcgcttgtacgaactgtcactgaaggat
gagccactgtccaacccgcccgccgatctagtcctgccggccatgctggagggggtgcgg
gccatggggctttcctgcctgccctggggcaaggagttggagggatggcggcggcgggtg
aatttcctgcaccgggcatcgcccgaccgctggcccgacgtctccgatgacgggctgttg
gcgaccctggaggactggctggcaccgtacctgtcgggtgtgacgcggcggtcgcatctg
gaccgggtggacctgcactcggccctgaccggcattctggattggaaccagcggcaggcc
atggatgcggaaattcccacgcatctgacggtgcccaccggcaaccgcatccccattgat
tattccggcgaagaacccgtgctggcggtgcggttgcaggaactgttcggtctggcggag
acaccgcgcctgggcggcgggcgcattcccgtgctgctgcatcttctatcgcctgcgcac
aggccggtgcaggtgacgcgggatctggccgggttctggtccgggtcgtacaaggatgtg
aaaaaggaactggccggacgctacccccgccattactggcccgacgatcctctgatcgcc
gaacccacggcccgggccaagcggcgcggcacctga
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