Notothenia coriiceps (black rockcod): 104941026
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Entry
104941026 CDS
T04920
Name
(RefSeq) cGMP-gated cation channel alpha-1-like
KO
K04948
cyclic nucleotide gated channel alpha 1
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
104941026
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ncc04040
]
104941026
Ion channels [BR:
ncc04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
104941026
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLZ
Ion_trans
cNMP_binding
EMC3_TMCO1
NPR3
GmrSD_N
Sec62
Hid1
Presenilin
CDC45
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
104941026
NCBI-ProteinID:
XP_010764363
UniProt:
A0A6I9MMA9
LinkDB
All DBs
Position
Unknown
AA seq
612 aa
AA seq
DB search
MAKVAPSVRSLNRSTSPTIALQDDPGEDMERDRTDQQAGPGVLFNANNSNNNEEEEKEKT
KKKKDKKERKEKKEKKEKEKQEKKERKENKLKEKEEKEKEKKEKEEKEKEKKAKDEAPKE
VTVVDPASNLYYHWLGLITIPVMYNWTLIIARCYLEQGLLVKEVPKLRERYLVSLQFKLD
MVSMIPTDLLYFVFGLKYPEIRLNKLLRFNRMLEFFQRTETRTNYPNALRISNLVMYIVI
IIHWNACLYYSFSKAIGFGSDRFVYPDPANPEFGRLIRKYAYSMYWSTLTLTTIGETPPP
VENSEYFFVVTDFLVGVLIFATIVGNVGSMITNMNAARANFQARIDAIKQYMTFRKVTKD
LEKRVIKWFDFLWTNKKAVDEREVLKYLPDKLRAEIAINVHLDTLKKVRIFADCEAGLLV
ELVLKLQPQVYSPGDYICKKGDIGREMYIIKEGKLAVVADDGIKQFVVLSDGSYFGEISI
LAIKGSKAGNRRTANIRSIGYSDLFCLSKDDLMEALTEYPDAKALLEEKGRQILMKDGLL
DLEVAAQGPDPKEMEEKVERMTTSLDALQTRYARLLAEHEATQSKLKHRVHRLESKLVTT
ERTTEEEGAGTA
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggccaaagtcgctccgtcagtccggtctctaaacaggtcgacatcacccaccatcgct
ctccaggacgatccaggtgaagacatggagagggacagaaccgatcaacaagccggacca
ggagttctgtttaacgccaacaacagcaacaacaacgaagaagaagagaaggaaaagaca
aagaagaagaaggacaagaaggagaggaaggagaagaaggagaagaaggagaaggagaag
caggagaaaaaggagaggaaggagaacaaactaaaggagaaagaggagaaggagaaagag
aagaaggagaaagaggaaaaggagaaagagaagaaggccaaagacgaggctcctaaagag
gtcacagtagttgacccggcgagtaacctctactaccactggctgggtcttatcaccatc
cccgtcatgtacaactggaccttgatcatagccaggtgttacctggagcagggtctgctg
gtgaaggaagttccgaagttgcgtgagcgctacttggttagcttacagttcaaactggac
atggtctccatgattcccaccgacctcctgtacttcgtctttggactgaaataccctgag
atacgcctcaacaagctattacgattcaacaggatgctagagttcttccagaggacggag
acgaggactaactacccgaacgctctccgaatctccaacctcgtcatgtacatcgtcatc
atcatccactggaacgcctgcctctactactccttctccaaggctatcggtttcgggtcc
gacagatttgtgtatcccgacccggcaaatccagagtttggtcgcctgataaggaagtat
gcatacagtatgtactggtccacactgacgctgaccaccataggagagaccccgccccct
gtggagaactcggagtactttttcgtcgtcactgacttcctggtgggtgtgttgatcttt
gccaccatcgtcggtaacgttggttcgatgatcaccaacatgaacgctgccagagccaac
ttccaggctcgcatcgacgcaatcaaacagtacatgaccttcagaaaggtaactaaggac
ctggagaagcgagtgatcaaatggtttgatttcctgtggaccaataagaaagcagtggat
gagagggaggtgttgaagtacctgccagacaaactgagagctgaaatcgccatcaacgtc
catctggacaccctgaagaaggttcgtatctttgcggactgcgaggcaggtctgctggtg
gagctggtgctgaagctgcagcctcaggtctacagtcccggagattacatctgtaagaag
ggcgacatcgggagggagatgtacatcatcaaggaggggaagctggctgtggtcgctgac
gacggcatcaagcagtttgtggttttgagcgatgggagctacttcggagagatcagcatc
ctggctattaaaggcagtaaggcaggaaatcgtaggacggcgaacatccggagcatcggg
tactcggacctcttctgcctctccaaagacgacctgatggaggcgctgacagagtacccc
gacgctaaagctctactggaggagaagggacggcagatcctgatgaaggacgggctgctg
gacctggaggtggcggcacagggtccggaccccaaggagatggaggagaaggtggagagg
atgacgacctcgctggacgccctgcagactcgatacgctcgactgttagccgaacacgaa
gccacgcagagcaaactgaagcaccgagtccaccgcctggagagcaagctggtgacaacc
gagagaaccacagaagaagaaggagctggaaccgcctaa
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