Notothenia coriiceps (black rockcod): 104941604
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Entry
104941604 CDS
T04920
Symbol
usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104941604 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncc03041
]
104941604 (usp39)
Spliceosome [BR:
ncc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
104941604 (usp39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
104941604
NCBI-ProteinID:
XP_010765033
UniProt:
A0A6I9MP35
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All DBs
Position
Unknown
AA seq
407 aa
AA seq
DB search
MMVSMKRERETEVDDDDEDDEDIVAAKVGRGRAAEDRRSRHCPYLDTINRSVLDFDFEKL
CSISLSHINVYACLICGKYFQGRGLKSHAYTHSVQFTHHVFLNLHTLKFYCLPDNYEIID
SSLEDITYVLKPTFTKQHIGGLDKQGKLYRAYDGTTYLPGIVGLNNIKANDYANVVLQAF
SNVPPLRNYFLEEENYMGIRRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAV
VLCSKKNFQITKQDSKRLCMLSCLIYIQEYKTYKENFLKRFQLTKLPPYLVFCIKRFTKN
NFFVEKNPTIVNFPITNVDLREYLTEEAQVTEKNTTYDLVANVVHDGKPTEGAYRIHVLH
HGTGKWYEMQDLQVTDILPQMITLSEAYIQIWKRQESDTDTNSHTAV
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgatggtttctatgaagcgagaaagagagactgaagtggacgatgatgatgaggacgac
gaagacatagtggcagccaaagtcggccgaggacgtgcagcagaagaccggagaagccgc
cactgtccttacctcgacactataaacaggagtgtgctggactttgactttgagaaactg
tgctccatatcactctcccacatcaatgtctacgcctgccttatatgtgggaaatacttt
caaggtagaggtttgaagtctcatgcttacacgcacagtgtgcagtttacccatcatgtg
ttcctgaatctgcacactctcaagttttactgtctgccagacaactacgagatcattgac
tcctcactagaagacatcacgtatgtgctgaaaccaactttcaccaagcagcacattgga
gggctggacaagcagggtaaactgtaccgagcctacgatggtacgacctacctgcctggc
atcgtagggctcaacaacattaaagccaacgactacgccaatgtggtcttacaggctttt
tccaatgttccaccgttgcgaaactacttccttgaggaggaaaactacatggggatccgg
agaccaccgggtgacatcatgttcctcttggtgcagaggttcggtgagctgatgcgcaaa
ctttggaatccgagaaacttcaaggctcatgtctctccacatgagatgctgcaagctgtt
gtgctgtgcagcaagaagaactttcaaatcaccaaacaagattctaaacgtttgtgcatg
ctctcctgtctcatctacattcaggagtacaaaacctacaaagagaatttcctcaaaagg
ttccagttgaccaaactgcctccgtacctcgtcttttgcatcaaaagattcaccaagaac
aacttcttcgtggagaagaaccccacaatcgtcaacttccccatcacgaatgtagacctt
cgtgagtacttgacagaagaagctcaagtgacagagaaaaacacaacatatgacctcgtc
gccaacgtagtgcatgatgggaaaccaaccgagggagcatacagaatacatgttctgcat
catggaactgggaagtggtatgagatgcaggacctgcaggtgaccgacattctcccccag
atgatcacactgtccgaggcctacatccagatctggaagagacaggagagtgacacggac
acaaacagccacacggcggtgtaa
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