Notothenia coriiceps (black rockcod): 104942572 Help Entry 104942572         CDS       T04920                                  Name (RefSeq) collagen alpha-1(II) chain-like   KO K19719   collagen type II alpha Organism ncc  Notothenia coriiceps (black rockcod) Pathway ncc04510   Focal adhesion ncc04512   ECM-receptor interaction ncc04518   Integrin signaling Brite KEGG Orthology (KO) [BR:ncc00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     104942572    04518 Integrin signaling     104942572  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     104942572  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ncc00536]     104942572 Glycosaminoglycan binding proteins [BR:ncc00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    104942572 SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Amnionless Motif Other DBs NCBI-GeneID:  104942572 NCBI-ProteinID:  XP_010766121 UniProt:  A0A6I9MW54 LinkDB All DBs Position Unknown AA seq 1487 aa AA seqDB search MFGFVDSRTVLLLVASQFVLLAVVRCQEEADQEAGGCIQDGQQYNDKDVWKPEPCRICVC DSGAVLCDEIICEEIKECANPLIPSGECCPICPADASAPIETLGAQGQKGEPGDIADVVG PKGPPGPMGPSGEQGSRGEAGAKGDKGNAGPRGRDGEPGTPGNPGPAGTPGTPGLGGNFA AQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGSPGEAGEPGPAGALG PRGPSGPSGKPGSDGDAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG ETGAAGAKGESGSAGENGASGPMGPRGLPGERGRSGAAGSAGARGNDGLPGPAGPPGPLG PAGAPGFPGSPGSKGEAGPTGGRGSEGAQGPRGEAGTPGSPGPSGASGNPGTDGIPGSKG SAGGAGIAGAPGFPGPRGPPGPQGATGSLGPKGQSGDPGLPGFKGEAGPKGELGPIGPLG GPGPSGEEGKRGARGEPGTAGPLGPPGERGAPGNRGFPGQDGLAGAKGALGERGVPGAIG PKGSGGDPGRTGEAGLPGARGLTGRPGDAGPQGKVGAPGSNGDDGRPGPPGPLGARGQPG VMGFPGPKGANGVAGKTGEKGLLGRPGLRGLSGKDGETGSAGPSGPAGPAGERGEQGQPG PNGFQGLPGPSGAPGEGGKPGDQGVPGEAGANGVSGPRGERGFPGERGGAGAQGLQGPRG IPGTAGSDGPKGAIGPSGSAGSQGPPGLQGMPGERGTGGITGAKGDRGDNGQKGPEGSAG KDGGRGLTGPIGPPGPSGPNGAKGETGASGPNGAGGARGAPGDRGEGGPPGPAGFAGPPG SDGQPGAKGELGESGQKGDGGAPGPQGPSGAPGPVGPTGVSGPKGMRGAQGAAGATGFPG AAGRVGTPGPNGNPGAAGPSGPAGKDGPKGVRGDAGLTGRQGDGGLRGPPGTHGEKGEAG EDGPPGPDGPSGAMGLGGSRGIVGLPGQRGERGFAGLPGPSGEPGKQGSTGGGGDRGPPG PVGPPGLSGPSGEIGREGTAGSDGPPGRDGSAGIKGERGNTGPAGAPGAPGAPGSTGPVG PLGKQGDRGEGGSQGPAGPSGPAGARGMAGPQGPRGDKGESGETGERGQKGHRGFTGLQG LPGPPGPNGDSGSAGPAGPNGAKGPGGPSGPAGKDGSNGTPGPIGPPGPRGRSGESGPAG PPGNAGPPGPPGPPGPGIDMSAFAGMGQTEKSPDPLRYMRADEASSSLRQHDVEVDSTLK SLNNQIENMRSPDGTQKNPGRTCRDLKLCHPEWKSGTYWVDPNMGSIADGIKVFCNMETG ETCVKPSIAEVPKKNWWTSKSKDRKHVWFGETMNGGFHFSYADDGPVANAGSIQLTFLRL LSTEATQNLTYHCKNSVAYMDQASGNLKKALKLQGSNEVEIRAEGTSRFTYTVMEDGCKT HTDRWAKTVIEYKTKKTSRLPFVDIAPMDIGGADQEFGVEVGAVCFL NT seq 4464 nt NT seq  +upstreamnt  +downstreamnt atgtttggctttgtggattcaaggactgttctgctacttgtagcatcccaatttgtttta ctagccgtcgtcagatgtcaggaagaggctgaccaggaagcaggtggctgcatccaggac ggccagcagtataatgataaggatgtgtggaagcccgagccgtgtcgtatctgtgtgtgc gacagcggagcggttctgtgtgatgagataatctgcgaggagatcaaagaatgtgccaac cctctcatcccatctggagagtgctgtcccatctgccctgctgatgccagtgcccccatt gagacactcggtgctcagggccaaaaaggagaaccaggagatattgccgatgttgtagga ccaaaaggaccaccgggcccaatgggcccctcaggtgagcagggatcacgcggagaagct ggcgctaagggagataagggaaatgcaggacctcgtggaagagatggcgagcccggcacc cccggaaaccccggacccgccggcacacctggaacaccaggacttggagggaactttgct gctcagatggctggaggttttgatgagaagtctggaggcgctcagatgggtgtgatgcag ggaccgatgggtcctatgggtcctcgtggcccccccggaccaagtggagctcctggccca caaggtttccaaggatcccctggagaggctggagagcccggaccagctggcgcattggga ccacgtggaccatctggaccttctggcaaacctggaagcgatggtgatgctggcaaacct ggcaaagctggtgagcgtggacctgcagggcctcagggagctcgtggattccctggaact cctggacttcccggaatcaaaggacacagaggtcatcctggtctggatggagctaaggga gaaactggagccgctggagccaagggagagtctggttctgctggagagaacggcgcctcc ggacccatgggaccccgtggtctgcccggtgagaggggtcgctctggagctgctgggtct gctggtgcccgtggtaatgatggtctgcccggtcctgctggtcctcctgggcctcttggt cctgctggagctcccggtttcccaggatccccaggatctaagggagaagctggtcctact ggaggccgtggatctgaaggagcacagggacctcgcggagaggccggcacccccggatct cctggaccctctggtgcatctggtaaccctggtactgatggtattcctggatctaaagga tctgctggtggtgctggtattgctggtgctcctggtttccccggcccccgtggccccccc ggacctcagggcgctacaggatctctgggaccaaagggacagtctggagaccctggtctt cctggattcaaaggagaggctggacccaaaggagagcttggccctattggtcccctaggt ggccctggaccctctggtgaagaaggaaagagaggagcaagaggagagcctggaacagcc ggacccctcggacccccaggagagagaggagctcccggtaaccgtggtttcccaggacag gatggtcttgctggagctaagggcgcccttggtgagcgaggtgttcctggtgctattggg cccaaaggtagcggcggagaccccggacgcacaggagaggccggtctgcccggagccaga ggtcttactggtcgccccggagatgctggacctcaaggcaaagttggagcccccggatct aatggagatgatggtcgccccggaccccccggccctctgggagcccgtggacagcccggc gtgatgggattccccggaccaaagggagccaatggtgtagctggaaagacaggagagaag ggtcttcttggtcgtcccggactgagaggtctttctggaaaagatggtgagactggatct gctggaccttccggccctgctggacccgctggagagagaggagagcaaggacagcctgga cccaatggattccagggtctgcctggacccagtggtgccccaggagagggtggaaagccc ggagaccagggagttcctggagaggccggagctaatggtgtttctggacccagaggtgag cgtggtttcccaggagagagaggaggtgctggagctcagggtctgcagggacctcgtgga atccctggtacagctggaagtgatggacccaagggagccattggaccatctggttctgct ggatctcagggaccccccggcctgcagggtatgcccggagagagaggaactggtggcatc actggagccaagggagacagaggtgacaacggacagaagggacctgagggatctgctgga aaggacggtggtagaggtttgaccggtcccattggtcctcctggcccatccggacccaac ggcgccaagggtgagactggagcttcaggacctaatggtgctggcggtgctcgtggtgct cctggtgaccgtggagagggcggtcctcctggccctgctggtttcgctggacctcctggt tcagatggtcagcctggtgccaagggagagctcggagagtctggacagaaaggagatggc ggtgctcccggacctcagggaccctctggagcccctggacctgtgggacccactggtgta tctggacctaaaggaatgcgtggtgctcagggcgctgctggtgctactggtttccccggt gctgctggtagagttggaactcctggtcccaatggtaaccccggtgctgctggtccttct ggccctgctggtaaagacggacctaagggcgttcgtggtgatgccggcctcacaggaaga cagggagacggtgggctccgtggacccccaggaacacatggagagaagggagaggctgga gaggatggacctcctggtcccgatggaccttcaggagctatgggtctgggtggatctcgt ggtatcgtaggtctgcctggtcagcgtggagagagaggtttcgctggtctccctggacct tctggagagcctggtaaacaaggatctactggtggtggtggcgaccgcggaccccctgga cctgtgggacccccaggactgagtggaccttctggagagattggacgagagggtaccgct ggatcagatggaccccctggtagagatggatctgctggaatcaagggagagagaggaaac accggccccgctggcgcccctggagctcctggagcccccggatccaccggacctgtcgga cccctcggaaagcagggagacagaggagagggtggctctcaaggacctgcaggaccatct ggacccgcaggagcccgaggaatggctggaccccaaggaccccgtggagacaagggagag tctggtgagactggagaaagaggacagaagggtcaccgtggattcactggacttcagggt cttcctggacctcctggccccaacggagactctggatccgctggacctgccggaccaaac ggcgctaagggacctggtggaccatctggacctgctggcaaagacggatcaaatggaacg cccggccccatcggaccccctggacctcgtggacgttctggagaaagcggccctgctggt cctcccggaaacgctggacccccaggcccccccggtcctcccggccccggcatcgacatg tctgccttcgctggtatgggtcagactgagaagtcccccgatcctctgaggtacatgagg gccgatgaggcctccagctccctgaggcagcacgacgttgaggtggattccactctgaag tccctcaacaaccagatcgagaacatgcgcagccccgacggcacccagaagaaccccggc cgcacctgcagagacctgaagctgtgccaccccgagtggaagagcggtacctactgggtg gaccccaacatgggcagcattgctgacggcatcaaggtgttctgcaacatggagactgga gagacctgcgtgaaaccaagcatcgccgaggtgccaaagaagaactggtggacaagcaag agcaaggaccgcaaacacgtctggttcggagagaccatgaatggaggattccacttcagc tacgctgatgacggccctgttgccaacgctggcagcattcagctgaccttcctgaggctc ctgtccactgaggcaacccagaacctcacctaccactgcaagaacagcgtggcctacatg gaccaggcctctggcaacctgaagaaggctctgaagctgcagggctccaacgaagtggag atccgcgccgagggcaccagtcgcttcacttacaccgtgatggaggatggctgcaagaca cacacagaccggtgggccaagaccgtcatcgagtacaaaacaaagaaaacctcccgtctg ccattcgtggacattgctcccatggacatcggaggagcggatcaggagttcggagtggaa gtaggcgcagtctgcttcttgtaa

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