Notothenia coriiceps (black rockcod): 104942912
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Entry
104942912 CDS
T04920
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8
KO
K10570
DNA excision repair protein ERCC-8
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03420
Nucleotide excision repair
ncc04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104942912 (ercc8)
09124 Replication and repair
03420 Nucleotide excision repair
104942912 (ercc8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncc04121
]
104942912 (ercc8)
03400 DNA repair and recombination proteins [BR:
ncc03400
]
104942912 (ercc8)
Ubiquitin system [BR:
ncc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
104942912 (ercc8)
DNA repair and recombination proteins [BR:
ncc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
104942912 (ercc8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EML
WDR55
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_RIG_1st
Beta-prop_WDR19_1st
WD_LRWD1
Beta-prop_WDR75_2nd
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_HPS5
WD40_CFAP43
Motif
Other DBs
NCBI-GeneID:
104942912
NCBI-ProteinID:
XP_010766528
UniProt:
A0A6I9MT99
LinkDB
All DBs
Position
Unknown
AA seq
401 aa
AA seq
DB search
MLGFLTARQAGVDDPLRLRRAESTRRVLGLKLNPDRDVDRIHGNGINTIDIEAVEGRYML
SGGADGVIVIYDLENYSRKLQYTCKAVCTVGRSSRYVHKFSVETVQWYPYDTGMFVSSSF
DKTMKVWDTETLKPAEVFAFEGNVYSHHLSPIARKHSLIAVGTTDPKIQLCDLKSGSRIH
VLQGHRAEILSVRWSPRYDHILATASADSKVKVWDVRRASGSLFTLDQHNGDKSKASSEA
VNTAHNGRVNGLCFTGDGLYLLTTGTDDRMRLWNSATGENTLVNYGKVCNESRKRLQFTV
SRGCSPEFVFVPCGSSVAVYALHTGELVTMLRGHYNNVDCCEFHPDYQELYTGGKDCNIL
AWVPAPRAPDVEEESTTANQAAADQSSVNPAFQDAWSSDED
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgttggggtttcttactgccaggcaggctggtgtggatgatcctctgcgactgaggcgt
gcagagtcaacgcggagggtcctgggtctgaagttgaatcctgacagagatgttgataga
atccatggaaacggcatcaacaccattgacattgaagcagtagagggcagatacatgttg
tctggcggcgcagatggtgtgattgtcatctatgacctggagaactacagtaggaagcta
cagtacacctgcaaggcagtttgcactgtaggcaggtcgagtcggtatgtccacaaattc
agcgtagagacagtccagtggtatccttatgacacgggcatgtttgtctcgagttccttt
gacaagaccatgaaggtctgggacactgagacactgaagcctgccgaagtctttgcgttt
gagggcaatgtctacagccaccacctctcccccatcgccaggaagcacagtctcattgca
gttggcaccacagaccctaaaatccagctgtgtgacctgaagtctggttcacggattcat
gttcttcagggccacagagcagagatcctgtccgtgcggtggtcgccccgatacgatcac
atcttagccactgccagtgcagacagcaaagtgaaagtatgggatgtgcgtcgggcttct
ggtagcctcttcactctggaccaacacaatggagacaaatcaaaagcatcctctgaggca
gtgaacacggcgcataatggcagagtgaatggcctgtgcttcactggcgatggcctctac
ctcctcaccactggaactgatgaccgtatgcgactatggaatagtgcaactggggaaaac
accctggtaaattacgggaaggtctgcaacgagagccgtaaaaggcttcagtttacagtt
tcccgtggttgcagcccagagtttgtgtttgtgccctgcggcagctcggtggctgtgtat
gccctccacacaggagagctggtcaccatgctcagagggcactacaacaacgtggactgc
tgcgagtttcacccagactaccaggagctctatactggaggtaaagactgtaacatcctg
gcgtgggttcctgcccctcgtgccccagatgtggaagaagagtcaacaactgcaaatcag
gctgctgctgaccagtcctcagtgaacccggcctttcaggatgcatggagtagtgatgaa
gactga
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integrated database retrieval system
