Notothenia coriiceps (black rockcod): 104942948
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Entry
104942948 CDS
T04920
Name
(RefSeq) LOW QUALITY PROTEIN: polycystin-1-like
KO
K04985
polycystin 1
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ncc03037
]
104942948
04812 Cytoskeleton proteins [BR:
ncc04812
]
104942948
04040 Ion channels [BR:
ncc04040
]
104942948
04091 Lectins [BR:
ncc04091
]
104942948
Cilium and associated proteins [BR:
ncc03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
104942948
Cytoskeleton proteins [BR:
ncc04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filament-binding proteins
104942948
Ion channels [BR:
ncc04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
104942948
Lectins [BR:
ncc04091
]
C-Type lectins
Others
104942948
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PKD
REJ
PKD_4
Lectin_C
PKD_channel
DUF308
Motif
Other DBs
NCBI-GeneID:
104942948
NCBI-ProteinID:
XP_010766566
UniProt:
A0A6I9MXB9
LinkDB
All DBs
Position
Unknown
AA seq
2571 aa
AA seq
DB search
MIFVPVKQTLWILCVFLSTAAKEDSPCPQGGQIHVSSRRCFFLSESPSSWPDAQTSCRET
RRGDVASAESLELQDFIRHSFPVKTTVWVWAKGSGGDGSDQTDVIEPVIPVESPGECTQM
ALGTKGEWRKTQCAGRYLFLCEREVTESFPSVDSYLTGSVLMSGDYTQIQIQPLPNAPDI
GQITVEMQLFPGLWFSHAGQLVSVELVVQPSPDSSLSRVQILRPYCNPNHHLVPPGCSAL
FNPFSCCSAVPLCNTTGGCSTGQYWCHLLEVCMPTTSPCSPYDSETRARGFVLPPRYTAI
PPFYHLVADLPLRVNPSSELTTISLILPDRAIMVYPDDIVAVQHTRDSATFLHCVNSDAS
LKSPWRQSYMSLRRREEWGGWREGGLTSLPHGGQWVDGVVCDLRMMYVDNLHRGTEHEDN
PGFTERETTTALNNQAFTTGPTPSLGSKFRLDVIHPVPDANNQIHVQINVPTLIVVKVLF
GEKASSTWSAPVLQTGVPFLSSCPKEVAQSWDGCKRQSHDAWFSSVTMISPTVGFETLNI
SVMDAESSQSVSVSVCSYEEVTGLSVEPHGCRRMIVDTPQSFTAKVESGSSVKFTWVIDY
MENFANQGESYSVVFKKPAEYKLRSQQTLLTADEMTPLSDPQFLLVREIIGVDATHLYTL
RVKVDISLPVTFRWDFGDGSSEKIHTQSAPCQTMEGLMERGDKQVYVQDSVNYTYPIPDD
YTLHVQVSNQYDHTDASKKIRVRPQLNHLLISSNVPVPLVNQTLILEATVEPSTYAVVYT
WDFGDSSESLQSIHHKVNHSFISAGAYNVTVCANNTLTVLTSWIMVEVLEKISGLTVSYN
GPSELNVATDFRATVTTGSNLTWDFDFGDGSFQGNISDGSISHVYVLPGNYTVDVTVSNT
VSKAHQSISVEVYTLAVSGVLPTTCVMSGNEIQFTALVNGNISNLTFHWLFQDGSSLIVV
TGQSTAMHTFLNHGICHISLTVLSTVTSVSYNTSICIESRITNVSVQPSKEVVAVGEEVC
FKVLVLPVQIRGYQLKWFNSSSSLIAVTENAQKCFIFRDEGVEVVLVTASNSVSNKTARA
SITVQHPVSDLSVGHDSESITLTVNTLASFWLASCTGSNVSVLWDFGDGSPVEQNKNVSH
VFTTTGQFTVTATAFNAVSRDSVTLQVNVLNTISDLSLHTNQPYAAVGEETLISAISSAI
SNTIYYWTVDGISSNVQGTDQFRFAFLKPGVYQVRVIAQNLVSRKEAAIVVEVFERIEGP
QIECQNLINVKYVPTQEELVFIASITKGSNVSYQWLATQSGINXIHGDEELFQMLAESPG
GISVQLRASNKLGEATSVVSLLAVQRVTGAHITTQSNVVALGKVVNISVSVVTGSDLEYL
WYMMSGVSPLQTHASFLLHTFTTVGHRLVRVLVQNVLSQCNVTKELNIQEGIQEVDFKIE
GKTHPFYAPTSSAIQLHGIIRKGSDLHWNWEVKGANLYNAFDQTFIYTFPYEGIYQVSLN
VSNGINWEMVSHSVTVQDAIEGLTLNISESSFCTEEQVTVIPTISKGSNVSFAITFKNKD
WIRSQSVLEGRFITSSLPAGKHLVTVKGWNHVSSSEVSSSILVTEHIQGLRLVNCCSDAF
EALKGTRFRAEVQSGLPVNYSWVFNSLGSKPTMFTGQEVIFTPAESGLLSVSVLATNGVC
SKKVNDTATVQWAVKKVTLVCHSERLFVGHAVKFSAQMNGRSNPRYLWGFGDSNETLATD
LSTVNHTYYIRGKYMVVVKVFNSVSHVSRQLHIQVEELLCSSPQVSLIQSHLTIFRSRMS
FFEAIVDINCSAYKAAYLWEILNESDCNNFTGNKVVLGSQVDASSPFLLLPKHTLDLGQY
CLVFTVSLQGTPLLVQRNISVTVVHSALVAVIKGGSHRLWPSLSDLILDGSESEDPDEPP
GVDDTLQYHWTSMTVVTTSEAPVFPVIVDCVSCSLLSSPHQISYTTPTVLSGQCGQCDDR
AQYKWSAEDQTGVTLDLNEVSTSTGRHSPNLVVRSGVLQPGQSYTFTLNVSQPGRGRWGS
ASLTIHPNNPPHGGLCELSPESDIRLLETVVTYNCSGWQDDESGTSQLIYTFQVAPCHPN
GPVCPLLTLYRGTRSAYGSLVPMGSPGQGRSTSVISVTLLVEDHLGAKVIALNRMLTVET
PPKDAVANQWLRNKSQTELWALVQQGNPQEIIPYSIALTSQLNQVPFANADLPDFPQALV
CLQVKLIEASSLKRSVAPQVASAALTHSVQTDANSPLTCPSPAAGLHQHSVLMEARSSTQ
RNPAQPGSLQVVQFVSDEPQQQVDQNQNRTHHPDQKQHHGPGMEEHAGPEHGEVLGEAVG
ALQGAALQRLQTLTAPTPLLHAVTLPPHTHTLPPHTHTLPPHTHTLPPLETVYLGNSSVT
TQQLFNDLHMSEWTNRQFKTLSLDFTHFHRESGLFVCVSIKLEWVRSQRLASFLSILPFL
IPSPHSGPDLQAALTVLLLVSALLMLSGGFWSMSAERSQYFRRFRNWFQLLLALLSLTTS
ILQLCFLSQASNCVSELRSDPDSFVDFLPAALLSERSSQSAAVLLTMLLLK
NT seq
7713 nt
NT seq
+upstream
nt +downstream
nt
atgatatttgtgccagtaaagcagacgttgtggattctctgtgtgtttctgagcactgca
gccaaagaggacagtccttgtccacagggaggtcagatccatgtctccagcagacgatgc
ttctttctctctgagagtccgtcctcatggcccgacgctcagacttcctgcagagagact
cgcagaggagatgttgcctctgctgagagcctggagctgcaggacttcatccgacactcc
tttccagtgaaaaccacagtgtgggtttgggcgaaaggatcggggggagatgggtcggac
cagacggatgttatcgagccagtgattcctgtagagagtccaggggagtgtactcagatg
gctttggggacaaaaggagagtggaggaagactcaatgtgccggacgatacctcttcctg
tgtgaaagggaagtaacagagtctttcccgtctgtggacagttatctgaccgggtcggtt
ctcatgagcggtgactacactcagatccagattcaacccttacccaatgcaccggacatc
ggacagatcacagtggagatgcagctgttcccaggtctgtggttcagtcatgcaggtcag
ctggtctcagtagagctggtggtccaacccagtcctgactcctctctgtctcgtgtccag
atcctccgaccgtactgcaaccccaaccaccatctggttcctccaggttgcagcgctctc
tttaatccgttcagctgctgctcagccgtcccgctgtgcaacacgacagggggctgcagc
acaggtcagtactggtgccacctgctggaggtctgcatgcccaccactagtccctgcagc
ccctatgactctgaaacaagggcccgaggcttcgttttacctcccagatacactgcaata
ccgcctttctaccacctggtggccgacctgcctctgagggttaacccgagctctgaactg
acaactataagtctgattcttccagatcgagcgatcatggtgtaccccgatgatatcgtg
gctgttcaacacactcgtgactctgcgactttcttacactgcgtgaacagtgacgcctct
ctaaagtccccctggcgccaaagctacatgtccctgaggaggagggaggagtgggggggc
tggagggagggaggcctcacttcccttccccatggaggccagtgggtggacggggtggtg
tgtgatctaaggatgatgtacgtggacaatcttcacagaggaaccgagcacgaagataac
cctggcttcactgaaagagagacaaccacagccttaaacaaccaggccttcacaactggt
cctactccgagtcttggatctaaatttaggcttgacgtcatccaccctgtgccagatgca
aataaccagattcacgtccaaataaacgtcccgacactcattgtggtcaaggtcctgttt
ggcgagaaagcaagtagcacatggtcagcaccagttctccagacgggggttcccttccta
tcatcttgccccaaagaggtggctcaatcctgggatggatgtaagagacagtcccatgat
gcctggttctcctctgtgaccatgatatcgcccacagttgggtttgaaacgctgaacatc
agtgtgatggacgcagaaagctctcagagtgtgagtgtgagtgtttgcagctatgaggaa
gtcacagggctaagtgttgagccgcatggatgccggaggatgatcgtagacacaccacag
tcatttacagccaaagtggagagtggttcctcagtgaaattcacatgggtgattgactac
atggagaactttgccaatcaaggagaatcttacagcgttgtgttcaagaaacctgccgag
tataagctcaggagccaacaaaccctcctgactgctgatgaaatgaccccactgtctgat
ccacagttcctattggtcagggagatcataggtgtggatgctacacacctctacactctc
agggtcaaagtggacatctccctgccggttaccttcagatgggattttggggatggcagt
agcgagaagatccacacacaatctgctccatgccagaccatggaggggctcatggagaga
ggagataaacaagtgtacgtccaggactctgtgaactatacctatcccatcccagatgac
tacacacttcacgtccaagtctccaaccaatatgaccacactgacgcctccaagaaaata
agggttcgccctcaattaaatcacctccttatttcctccaacgttcctgtacctctcgtc
aatcagactcttattcttgaagctacagtggagccctcgacctacgctgtcgtctacaca
tgggactttggcgatagctctgaatctctccaaagcatccaccataaagtcaaccacagt
tttatttctgctggggcttacaacgtcacagtgtgtgccaacaacaccctgacagtgctg
acctcctggataatggtggaagttctggagaaaatctctggattaacagtcagctacaat
ggacccagtgaactaaacgtagctacagatttccgagctacagtgacgactggtagtaat
ctaacgtgggattttgactttggcgatggatcctttcagggcaacatttcagatggctcc
atctcccatgtctatgtattaccaggaaactatacggtagatgtaactgtctcgaatact
gtcagcaaagctcatcagtccatcagtgtggaggtctatacgttggctgttagtggagtt
ctccctacaacatgtgtcatgagtggaaacgaaatacagtttactgctttggtgaatggg
aacatatccaatctgactttccattggctgtttcaagatggttcgtctctgattgtagta
acggggcaatctacagccatgcacaccttcctaaaccatgggatttgtcatattagtctg
actgtgttgagtactgttacatcagtatcctataatacgagtatctgtatcgaatcgcga
ataaccaacgtatcagtgcagccatcaaaggaagtagtggcagtaggggaagaggtatgc
ttcaaggtgttagttttacctgtacagataagaggttaccaattgaagtggttcaacagc
tcctctagcctcattgctgtgacagaaaatgctcaaaagtgtttcatctttagggatgaa
ggtgtggaagtggttttagtgacagcaagtaacagtgttagcaacaaaacagccagagct
agtatcaccgttcaacaccctgtaagtgacctgtctgtggggcatgatagtgaaagtatc
acactgacagtcaacacattagcatcattttggcttgcttcttgcactggtagcaatgtg
tccgtgctgtgggactttggagatggatctcctgttgaacagaacaaaaacgtgtcacat
gtctttaccacaacaggtcagtttacagtcaccgccacagcatttaacgccgttagccgt
gattctgtgacccttcaagtcaatgttttaaatactatttcggacctttctcttcacacc
aaccagccttatgctgcagttggagaagaaacactcatctcagcaattagcagtgcaatc
agtaacaccatttactactggactgtagacggtatatcctcaaacgtacaggggaccgat
cagtttagatttgctttcctgaaaccaggagtgtatcaagtccgagttatagcacagaac
ttggtgagtagaaaggaagcagctattgtagttgaggtctttgaaagaatagagggtcct
cagattgaatgtcagaacctgataaatgttaaatacgtaccaacccaagaggaactagtg
tttattgcctcgatcaccaagggatccaatgtctcttatcaatggctcgctacacaaagc
ggaataaacnncatacatggtgatgaagagctttttcagatgttagctgaatctcctgga
gggatttcagttcagttaagagcttctaacaagttgggtgaggccaccagtgttgtttct
ttgttggcagtacagcgtgttacaggtgcgcacattacaacacaatcaaatgtcgtggca
ttagggaaagtagtgaatatctctgtatcggtggttaccggttcagatttggagtacctt
tggtatatgatgtctggtgtctcacctttgcaaacacatgcatccttccttctccacact
tttacaactgttggtcatcgtcttgttagagtgttggttcaaaatgtcctcagccaatgc
aatgtcaccaaagagttgaatatacaggagggaatccaagaagtggattttaagattgaa
ggaaagacgcatccgttttatgcccccacaagttctgctattcaactccatgggattatt
cggaagggaagtgatctgcactggaactgggaagtaaaaggtgctaatctttataatgct
ttcgatcagaccttcatctacacgtttccatatgaaggcatctatcaggtgtctttgaat
gtctccaatgggatcaactgggagatggtttcacacagtgtcacagtccaggatgcaatc
gagggtctaacgttgaacatttccgagtcttctttctgcacggaggaacaagttactgtt
attccaacaatctccaaaggaagcaatgtcagctttgctataacctttaaaaacaaggac
tggattcgtagtcagagcgttcttgaggggcggttcatcacatcgagccttcctgcaggg
aaacatctagtaacggtgaaaggttggaaccatgtcagcagttctgaggtgtcttcaagc
attctggtcactgagcatattcaaggtctgagacttgtgaactgttgttctgatgctttc
gaggctctgaaaggaaccaggttcagggcagaagttcaaagtggacttcctgtgaactac
tcctgggtatttaattcattggggtctaagcctaccatgttcacaggacaggaagtgatc
tttactcctgcagaaagtggtttactgtctgttagcgtgcttgctaccaatggagtctgc
tcaaagaaggtaaatgatactgccaccgttcagtgggctgttaagaaggtgacgcttgtc
tgtcattcagaaagattatttgttggacatgctgtcaagttttctgcacagatgaatgga
cggagcaatccaagatatctctggggctttggagactccaatgagacgttggcaacagac
ttaagcacagtcaatcatacttattatatccgtgggaaatacatggttgtggtcaaagtg
ttcaacagtgtcagccatgtatctagacagctacacatacaagtggaggagctcctttgt
tcaagccctcaagtttctcttatccagagccatttgactatcttcaggtctagaatgagt
ttttttgaagctatcgtggacattaactgctctgcttacaaagctgcgtacctatgggag
atacttaatgagtcagattgtaacaatttcactgggaacaaagtcgttcttggaagccag
gtagatgcatcgtcaccctttctcttactcccaaagcatactctggatttgggacagtat
tgcttggtgttcaccgtttccctccaaggaacgcctttacttgtccaacgaaatatcagc
gttacagtagtccactcagcattggtcgctgttatcaagggaggatcacacagactgtgg
cccagcctcagtgatctcatcctggacggatctgagtctgaagaccctgatgaaccgcca
ggagtggatgatacactgcaataccactggacctccatgactgtggtgactacgagtgaa
gctcctgtgtttcctgtgattgtggattgcgtgtcctgctctcttctgtcctcccctcac
caaataagctataccacccccactgtactgtcaggacaatgtggacagtgtgacgatcga
gctcagtacaagtggagtgctgaggaccagactggcgtgacccttgaccttaacgaggtc
tccacatctaccggcagacactctcctaacctggtggtgcgttcaggtgtcctacaacca
ggacagagttacaccttcactctcaatgtgtcccagcctggcagagggcgttggggtagc
gccagcctgacgatccaccctaacaatccccctcatggaggcctctgtgaactcagtcca
gagtcagatatacgtctgctggagacggtggtcacctacaactgctcagggtggcaagat
gatgaaagcgggacctctcagctgatttacaccttccaagttgcaccatgtcatcccaat
ggcccggtgtgccccttactcactctgtacaggggtactcgttcagcttatggcagtctg
gttccaatgggaagtcctgggcaaggaagaagcacatcagttatctcagttactttgctg
gtagaagaccatctgggggcaaaagtcattgctctgaacagaatgctgacagttgaaact
cctccaaaggacgcagttgccaatcagtggctgagaaacaagagccagacagagctttgg
gctttagtccaacaaggaaaccctcaagagatcatcccttattccatcgctctcaccagc
cagctcaatcaggtcccatttgcaaatgcggatcttccagacttcccccaggctctcgtc
tgtctccaggtgaaactgatcgaggcctcctctctgaaacgctccgtcgctccgcaggtg
gcgagcgccgctcttactcactccgtacagactgatgccaactcccctctgacctgcccc
tctcctgcggccggtcttcaccagcactcggtactgatggaggcccggtcgtccacacag
aggaacccggctcagcctggttctctccaggtggtccagtttgtgagcgatgagccccag
cagcaggtggatcagaaccagaaccgcacacaccatcccgaccagaagcagcaccacggc
cccgggatggaggaacatgctggccccgaacatggtgaggtgctgggtgaggcagtgggc
gctctgcagggtgctgccctccagaggctgcagaccctcactgctccaacgcctctgctg
cacgctgtaactctgcctcctcacacacacactctccctcctcacacacacactctgcct
cctcacacacacactctccctcctctggaaacggtgtatctgggaaacagcagcgtaacg
acgcagcagctcttcaatgacttacacatgtctgagtggaccaacagacagtttaaaacc
ctttccctcgacttcacacacttccacagagagtccggtttgtttgtgtgtgtttccatc
aaactggagtgggttcgctcacagagactcgcctccttcctctccatccttcctttcctc
atcccttctcctcactctggacccgacctgcaggcagcactcacggtgcttctcctggtc
tccgctctcctcatgttgtccggggggttttggtcgatgtctgctgagcgctcccagtac
tttcgacggttcagaaactggttccagctcctcctggctttgttgtctctaacaacctca
atcctgcagctctgcttcctgtctcaggcatccaactgtgtttctgagctccgatccgat
cccgacagcttcgtggacttcctgcctgcggccctgctgtcagagaggagttctcagagt
gccgctgtcctgctcacgatgctgcttctgaag
DBGET
integrated database retrieval system
