Notothenia coriiceps (black rockcod): 104943308
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Entry
104943308 CDS
T04920
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ncc03009
]
104943308
Ribosome biogenesis [BR:
ncc03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
104943308
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UTP20_N
UTP20_C
Phage_portal_2
DUF4058
FANCI_S2
Motif
Other DBs
NCBI-GeneID:
104943308
NCBI-ProteinID:
XP_010766965
UniProt:
A0A6I9MZA0
LinkDB
All DBs
Position
Unknown
AA seq
2278 aa
AA seq
DB search
MDRSDSRTFCPSCASDMCESQGHGKAPGNYRSLQDEGRWHRTERTFQTRAKTRMFWTAIA
PKAIFVSALASRCSEMRIKKTRKTRALQALSPEGVPADTFNGPARPAFTQASPDLTSLPV
QDTNAAADHRPSRSPAQTRAQRVSWQEHLSPRPRSAFSHQREEDKTAGGLTPSSPRRAEL
EVPCSQHPEHVPALHVPLSRGTHARGMDNRDFWKVYYENLEMVAGIAEKELHEDDEDDEE
EEETDVQAEPGCDVIESGDVGVLFLEQLKLTANPDERTDFLNFRILLWRCMTEFPERVEP
RCRELCPLLLRFIRNEFYTSDLLVAPTQDLRKVDDAAQEESGMAVEEEEDEDEQEAEEGG
RQQKKAPPKRAAAKQLIVHLKVFAKFTNPRSLYLESSLSDLYNQLLCHQDQQIQRVALEC
VLTYKDANIVPYKENLERLLDDKHFKEEIVHFNISETGVVDASHRARLIPLLMRILFGRM
RSKAGSKFQGKASSASRSSIILRFLAGCQAEELGIFIDLLLEPVCHYSQGTCLAAVEKAI
ADTDVAAVLPLGRQHSLLNIINVVIQKLGHLINIYLPKVLQILLCVTASVSTILDKRLQL
RAGCISPLKNLRRLGVLRIQDFLDGFDSYSFSADELDAVFAAVVWPQVCRLSTESPYSPT
PLLRLIHVWCKNARYYPLLAKQRLNHPECDILLNVFALLSAKKVSTVTIAMVMDIAESLA
TTQDFVASEDETELNVNNCVFPQPKEGALIAADALTQGSSLLLPHISTLLNYLSGVVRNS
DRLKKKKFRVQVAKELNILSKVSRFVSDKEQSSVLITLLLPYLHKGHNPEETEIDTLATL
QNLLRQCVQPSDFLRPLSKLFSVIQNKLPRMALTNVFQTLSDLEPSLKYITDLATKLNAF
DSRHLDEIHFDVRLCAFQEASRRVKEMTTLDLDYIGTIMHNVFHTFEIGDMSLGDNANLC
LSAVITQLAEIGAGEQLYKDIVQHTILDAVHKGLRSKTDSVQHEYTTVLACLVKTFPTKK
EFRDLVQLTNYHDLESDFFEHMKHIQIHRRGRALRKFAKQLTEGQVVLTPRSLQHYIMPY
AMTALLDEKMQKHEGMITASVEVVGAVCRRLTWSKYLYYLKHFIHILQTSQVEQKLAVSL
LLTVLDAFHFDHQTLSREMEAAKAREAVSAAMEADGEEQAAADESEASDDEEAMEVEGKT
DPSDVPMETDTNSGENGDVPKQAATTVAKVPAAPPPMAVSSGLPQSTEELGTLISAIHQT
VTNSVLPRLHKCLNAKIKRDDEHKAVKSKDVKDEEVARIPIAFAMVKLMQTLPPAIMEVN
LPGILIKVCVVLRNRFQEVRDVARGTLVKIIETLGFRYLQYLLKEMQGLLAKGYQVHVLT
FTVYQLLTVLSPTLKSGDLDACMNMLIDIFNNELFGPVAEEKDVKGIVSKLMEARHSKSM
DSYELLARYCSKESVTKFILPLKEMLDNSASLKVCIRVGAVLRRMVLGLLVNDGMTSQDI
LLLCHGLVSQSLPLLTKRDREKSSVKPPPDPRLPPPSCLLLLPTPTRGGRKAPVSSRTNM
HILVDTGLKLLHLSLKKSKVTSSDPTALQMLDPFVLLLLDCLDSRHVKVITEALVAFTWL
LKFPLPAVEQNADQMTKLLFVLLKDYSKAGAARGENYQLVQNCFKAITILVKNVKSNQIS
ETQLQVLLGYAEEDIYDQSRQATAFGLLKAILSRKLVVPEMEELMTKVAKLSVTGNNGGI
RIHCRQIYLKYLLDYPLGKKLRGHLDFVVAQLHYEHDTGRESVLEMLAYIFQTFPKELLL
THCGLFFAPLALVVVNDDSARCKKMAAMAIKALLAQLDINHKNTMYSLVNTWLHAEKASM
RRLGAQICGLFVEVEEEQFTRRLDDLLPLLEKEINPVNYDDIEEEQDEKGADRLLYSFLT
LITKLSKHCSLLEIRQPHDTLTLIWGHIEAHLRYPHCWVWLTSSQLFGQLFAAHPAEQLV
AGWRGEGGDASPQSPTTAFITSGLDKKMRELALSFCHQLQSKFLDTASGEQVVKNLLFVG
KVIYLVSPESDATPAQEEVKEEEEKEEEGEVEEKEEEVEEKEVEKDENDKEKEKEDEEED
DEDDKDDRPPSLLWLMKKLSLMAKREAAHTPKVPLKRTCVFKFLGAIAMDLGKERLGPYL
STIITPLYRELDSTYADQDPTLKNLAQELIELLKRYVGLEKFSLAFSGVQKEFSQRRAAR
KKHRAMQAVANPDIAAKKKLKKHRNKIEAKKRKIEFLRPGYKAKRQRGNTLKNLAMVQ
NT seq
6837 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcagcgattcacggacattttgcccctcctgtgcgagcgacatgtgcgagtcc
caaggccacggcaaagcacctgggaattatcggtcgctacaggacgaaggcaggtggcat
cgcactgaacgaaccttccagacccgggcaaaaacgaggatgttctggactgccattgct
cccaaggccatatttgtctcggctctagcttcccgatgcagcgagatgcgaatcaaaaag
acaaggaagacgagggctctccaggctctgtctcccgaaggcgtcccagccgacaccttc
aacggtcctgcccggccggccttcactcaagcttcccctgacctcacgtccctgccggtt
caagatacgaatgcagcagcagaccacaggccgtcccggtccccagcccagacacgagcg
cagagggtgagctggcaagagcatctcagcccccgacccaggtcggctttcagccaccag
cgcgaggaagacaagaccgcgggcggcctgacaccctcctctcctcgacgagcagagctg
gaagttccctgttcccagcatccagaacacgttcctgcgcttcatgtgcctctctctcga
gggacccatgccagagggatggacaacagggacttctggaaggtctactatgaaaacctg
gagatggtggcagggatcgctgaaaaagaactgcatgaggatgatgaggacgatgaggag
gaagaggagacggatgttcaggccgagccaggatgtgacgtcattgagagcggggacgtg
ggggtgctgttcctagagcagctgaagttgaccgccaaccccgacgagaggacggacttc
ctcaacttccgcatcctgctgtggcgctgcatgacggagtttcctgagagagtggagccg
cgctgccgggaactgtgccccctgctgctccgcttcatcaggaatgagttttacacctcc
gacctgctggtggcacccactcaggacctgaggaaggtggatgacgctgcccaggaggag
tctgggatggctgtggaggaagaggaggacgaagatgagcaggaggcagaggaaggaggc
aggcaacagaagaaggctcctccaaagagagccgctgcaaaacagctgatcgtccacctg
aaggtgttcgccaaattcaccaaccctcgctctctctacctggagagcagcctcagtgat
ctctataaccagttgctctgccaccaggaccagcagatccagcgagtggctctggaatgt
gttctcacatacaaggacgccaacatagtaccatacaaggaaaatctggaaaggctactt
gacgacaaacacttcaaagaggagattgtccatttcaacatttctgagacaggagtggtg
gatgcctcacacagagccaggctcatcccactgctcatgaggatcctgtttggccgcatg
cgcagtaaagcaggcagtaagttccaggggaaggcgagctccgcctcccgctcctccatc
atcctgcgcttcctggctggctgccaagcggaggagctggggatcttcatcgacctgctg
ctggagcccgtctgccattacagccaaggtacctgcctggctgcggtggagaaagccatc
gctgacacagatgtggctgccgtcctgcctctgggccgacagcacagccttctgaacatc
atcaacgtagtgatccagaaactgggtcacctgatcaacatctacctgcccaaagtgctg
cagatcctgctgtgtgtcaccgcctctgtgtccaccatcctggacaaaaggctgcagctg
cgtgcggggtgcatcagtcctctgaagaacctgaggcgcctcggcgtcctgaggatccag
gactttctggacggcttcgactcctacagcttcagcgcagacgagctggatgccgtcttt
gccgctgtggtctggcctcaggtgtgtcgtctctctacagagagcccctactcccccacc
cctctgctgagactcatccatgtgtggtgcaaaaatgccaggtactacccacttctggct
aagcagaggctgaaccatccggagtgtgacatcctcctcaacgtcttcgccctcctctcg
gccaaaaaagtttccacagtgaccatcgccatggttatggacatagccgagtccttagca
accactcaagactttgtggcctcggaggatgagacggagctcaacgtcaacaactgtgtg
ttcccgcagcctaaagagggcgctctcatcgcagctgacgctctaacccagggctccagc
ctgctgctgcctcacatatccaccctgctgaactacctcagcggagtcgtacgcaactcc
gaccgactgaagaagaagaagttcagggttcaggtcgccaaagagctcaacatcctctcc
aaggtcagtcggtttgtcagcgacaaggagcagagctcggtgctcatcaccctgttgctg
ccctacctccacaaaggccacaatcctgaggagacagagatcgacaccctggccacgctg
cagaacctcctgcggcagtgtgtgcagccctcagacttcctgcggccgctcagcaagctc
ttctccgtcatccagaacaagctgcccagaatggccctcactaacgtcttccagactctt
tcggatttggagccctcactcaagtacatcactgatttagcaacaaagctgaatgcgttc
gacagtcggcacttggacgagatccacttcgacgttcgtctctgcgctttccaagaagcc
tccaggcgagtcaaagaaatgaccactctggacctggactacatcggcaccatcatgcac
aacgtcttccacacctttgaaatcggtgacatgtcgctgggagacaacgccaacctgtgt
ctgtctgcagtcatcacgcagctggcggagatcggcgctggagagcagctctacaaggac
atcgtgcagcacaccatcctggacgccgtgcacaaggggctccgcagcaagacagacagc
gtgcagcatgaatacaccaccgtgctggcctgcctggtgaagacctttcccaccaagaaa
gagttcagagacctggtgcagctcaccaactaccacgacctggagtctgacttcttcgag
cacatgaagcacatccagatccaccgtcggggtcgtgccctgaggaagttcgccaagcag
ctgacggagggccaggtggtgctgacgccccgctctctccagcattacatcatgccgtac
gccatgaccgccctgctggatgagaaaatgcaaaagcatgagggcatgataacagcgtcg
gtggaggtggtgggcgcagtatgccgcaggctgacgtggtctaagtacctctactacctg
aaacacttcatccacatcctgcaaacatcgcaggtggagcagaagctggctgtcagtttg
ctcctcacagtcctggatgctttccactttgaccatcagaccctcagcagagaaatggag
gctgccaaggccagagaggctgtgagtgccgcaatggaggccgatggcgaggagcaagct
gcagccgacgaatcggaagcaagcgatgatgaggaggcaatggaggtagagggtaaaacc
gatccatctgatgtccccatggaaacggacaccaacagtggagaaaatggcgacgtcccc
aagcaggcagctaccactgtagccaaggtgccggcggctcccccccccatggcggtgtcc
agcgggctgccgcagagcaccgaggagctggggactctgatcagcgccatccaccagacc
gtgactaacagcgtgctgccccgcctgcacaagtgtctcaatgcaaagatcaagcgtgac
gatgagcacaaggcagtgaagtcaaaggatgtaaaggatgaggaagtggccagaataccg
atcgccttcgccatggtcaaactgatgcagacgctgccaccagccatcatggaggtcaac
ctgcctggcatcctgatcaaggtgtgtgtggtgctgaggaaccgcttccaggaggtccgt
gacgtggcgaggggaactctggtgaagatcatagagactttaggcttccgctacctgcag
tacctgctcaaagagatgcaggggctcctggctaaaggctaccaggtccacgtgctaaca
ttcacagtttaccagctgctgacagtcctcagtccaaccctgaagagcggagacctggac
gcctgcatgaacatgctcatcgacatcttcaacaacgagctgttcgggcctgtggccgag
gagaaggacgtgaaggggatcgtctccaagctgatggaggcgcgacacagcaagagcatg
gactcctacgagctgctggctcgctactgcagcaaagagagcgtcaccaagttcatattg
cctctaaaggagatgctggataactcagccagtctgaaggtgtgtatccgggtgggggcc
gtgctgcggaggatggtcctgggtctgctcgtcaacgatggcatgacgtctcaggatatc
ttgctgctgtgccacggcctggtcagccagagtctgccgctgctcaccaagagagaccga
gagaaatcctcagtgaagccccccccagaccccaggctgccccctcccagctgcctgctc
ctgcttccaactccaacgaggggggggcggaaggctccagtcagcagccgcaccaacatg
cacatcctggtggacaccggcctcaagctgctccacctgagtctaaagaaatccaaagtg
acgtcctccgatcccacggctctgcagatgctggatcctttcgtcctgctgctgctcgac
tgcctcgactccaggcacgtcaaggtgatcacggaggctctggtggccttcacctggctg
ctgaagttccctctcccagcagtggagcagaacgcagaccagatgaccaagctgctgttc
gtcctgctgaaggattactccaaggccggagcggcccgcggggagaactaccagctggtg
cagaactgcttcaaggctattaccatactggtgaagaatgtcaaaagcaaccagatctca
gagacacagctgcaagtgctgctgggatacgctgaggaggacatctacgaccagtcccgc
caggccaccgccttcggcctgctgaaggcaattctgtccagaaagctcgttgtcccagag
atggaggagctgatgaccaaagtggccaagctttctgtcaccggcaacaacggcgggatc
agaatccactgtcgacagatctatctcaaatacctgctggactaccccctggggaagaag
ctgagggggcacctggactttgtggtggcgcagctgcactacgagcacgacaccggcagg
gagtcagtgctggagatgctggcctacatcttccagaccttccctaaggagctgctgctg
acgcattgcggcttgttcttcgccccgctggccctggttgtggtcaatgatgactcggca
cgctgtaagaaaatggccgccatggccatcaaggcattgctggcccagctggacattaac
cacaagaacaccatgtactcccttgtcaacacctggctgcatgcagaaaaggccagcatg
cggcgtctgggagctcagatctgcggcctgttcgtggaggtggaggaggagcagttcacc
cgccgcctggacgacctgcttcctctgctggagaaggagataaaccccgtcaactacgat
gacatcgaggaggagcaggacgagaagggggcggaccggctgctctacagtttcctcacc
ctcatcaccaaactgagcaaacactgcagcctgctggagatcagacagcctcacgacaca
ctcactcttatctggggtcacattgaagcccacctgcggtaccctcactgctgggtgtgg
ctgacctcctcgcagctctttggtcagctgtttgcagcccatccggcggagcagctggtg
gctggctggagaggagagggtggagacgcttcacctcagtccccaactactgctttcatc
accagcggtctggacaagaagatgagagagctggcgttgtctttctgccatcagctacag
tccaagttcctggacacagcctcaggagagcaggtggtcaagaacctgctgttcgtcggc
aaggtgatctacctcgtttcccccgagtctgacgccacgcccgctcaggaagaagtgaaa
gaggaagaggagaaggaagaagagggtgaggtggaggagaaggaagaagaggtggaggag
aaggaagtagagaaagatgaaaatgacaaggagaaggaaaaggaagatgaggaagaagac
gatgaagacgataaggacgaccggccgccttccctgctgtggctgatgaagaagctgtcg
ctgatggcaaagagagaggcggcacacactcccaaagttcctctgaagagaacgtgtgtg
tttaagttcctgggagcgatagccatggacctggggaaggagcgactcggcccctatctg
agcaccatcatcactcctctgtacagggagctggacagcacctacgcagaccaagacccc
accctgaagaacctggctcaggagctgatcgagctgctgaagagatacgtggggctggag
aagttctctctggccttctctggcgtccagaaggagttttcacagaggagagccgcgcgc
aaaaaacacagagccatgcaggcggtggctaacccagacatcgcagccaagaagaagctc
aagaagcacaggaacaaaatcgaagccaagaagaggaagattgagttcctccggcccgga
tacaaagccaagaggcagcggggcaacacgctcaagaacctggccatggtgcagtga
DBGET
integrated database retrieval system
