Notothenia coriiceps (black rockcod): 104943343
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Entry
104943343 CDS
T04920
Symbol
sox6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncc03000
]
104943343 (sox6)
Transcription factors [BR:
ncc03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
104943343 (sox6)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
104943343
NCBI-ProteinID:
XP_010767009
UniProt:
A0A6I9MKY4
LinkDB
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Position
Unknown
AA seq
780 aa
AA seq
DB search
MEGFLRSSFLLSRVMSSKQATSPFASVVDGDDAMSQEHLSWEKEESAEAHGTPQLPLHSL
LHGKAHPDEMQPLSSMPPESDWDSLVSAQQRMESDSNKVCSLYSFRNNSTSPHKPEEGAR
ERSDLLSGSAFGTPERRKGSLADVVDTLKQKKLEEMTKTEQDDPSCMEALLSKEWKEKME
SLNTSELLAEVKGTPESLAEKEHQLSTMIAQLISLREQLLAAHDEQKKFAASQMEKQRQQ
MELARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPPLMIPIFPHDQRTLAAAAAA
QQGFLFPQGMSYKPGDNYPVQFIPSTMAAAAASGLSPLQLQQLYAAQLASMQVSPGAKLP
PLPQSFNASGPISPSSLKNDKSSSSPITHIKEEGSQPLNLSARPKMTDLVKCPTSPTQNM
FLGSKSSPNSLLGKGGIPSPLGGLGRASSLDILSSLNSTALFGDQDTVMKAIQEARKMRE
QIQREQLQIHQQGMEAKLSALNSVGLNNCRADKERAHFESLGHHLGKLGEEGKIGHRVID
LTRPEDLDGGAGSTEARVFREARGRNNNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNS
NISKILGSRWKSMTNQDKQPFYEEQARLSKQHLEKYPNYKYKPRPKRTCIIDGKKLRIGE
YKQMMRSRRQEMRQFFTVGQPPQIPITTSASMVYPGAITMATTTPSPQMTSECSSASASP
EPTIPVIQSTFNMKLEPNLMANNTVPVNGEDAMDMYEEFEDEPKSDYSSENDTQGRVSAN
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggagggctttcttcgtagcagctttttactgagcagagttatgtcttccaagcaagcc
acgtctcctttcgcctctgtggtcgatggggatgatgccatgagccaggagcacttgtct
tgggagaaagaggagagtgccgaggcccatggcacaccacagctgcccctgcacagcctg
ctccatggaaaagcccatcctgatgaaatgcagccgctcagcagcatgcctccagagagc
gattgggacagtctggtttcagcccaacagcgcatggaatctgacagcaataaagtatgt
tccctgtactccttccggaacaattccacttccccacacaagccggaggagggggcccgg
gagcgaagcgacctgctgagtggatcagcatttggaactccggagcgccgcaaaggaagc
ctggcagacgtagttgacacgctgaagcagaagaaactggaggagatgacaaagacagaa
caagacgatccctcatgcatggaggcacttctttctaaagagtggaaagagaagatggag
agtctcaacaccagtgaactgctggcagaagtaaaaggaactccagagagcctggcagaa
aaggaacaccagctctctacaatgatcgcccagctgattagcctgcgagagcagctcctg
gctgcccacgacgaacagaagaagtttgccgcctcacagatggagaaacagaggcagcaa
atggagttagctcgtcagcagcaggaacagattgcaagacaacaacagcagcttctgcag
cagcagcacaaaatcaacctcctccagcaacagatccagcaggtccagggtcacatgcct
ccgctcatgatccccatatttccacacgaccaacgcactcttgcagcagcagccgccgcc
cagcaaggatttctcttccctcaaggaatgtcttataagccaggtgataactacccggtg
cagttcattccatccacaatggcagctgcagccgcgtcaggactcagccccctccagctt
cagcaactgtatgccgcccagcttgccagcatgcaagtctctcccggagccaagttgcct
ccactaccccagtccttcaatgcgagtgggcccatttctccctcttctctgaagaatgac
aagagttcctccagccccatcactcacatcaaggaggagggatcacagccgctcaacctg
tctgctcggccaaagatgacagacctggtgaaatgccccacatcgccgacacaaaacatg
ttcctcggcagtaaaagcagccccaacagtctcctcggcaagggtggcattcccagccca
cttggaggcctgggccgtgcatcatctcttgatattctgtccagcctaaactccaccgcg
ctgttcggggaccaggacacagtgatgaaggccatacaggaggctcgcaaaatgagggag
cagatccagagggaacagctgcagattcaccagcagggcatggaggcaaagctgtccgca
ctcaactccgtgggcctcaacaactgcagagctgacaaggagagggcgcattttgagagc
ctcgggcaccacctcggaaagctgggtgaggaagggaagatcggccatagagttattgac
ctcaccaggccagaagatctcgatggaggtgctggatctactgaggcacgagtcttcaga
gaagctagaggaaggaacaacaacgagccccacattaaaaggccaatgaatgcattcatg
gtgtgggccaaggatgagaggcgcaagatcctccaggccttccccgacatgcacaactcc
aacataagcaagattttgggttcccgatggaagtccatgactaaccaggataagcagcca
ttctatgaagagcaggcccgtctgagtaagcaacacctagagaagtacccaaactacaag
tacaagccacggcctaagaggacctgcatcatcgatggaaaaaaactccgcattggagag
tacaagcagatgatgcgttcacggcgacaagagatgaggcagttctttaccgtgggacag
ccaccgcagatccccatcaccaccagcgccagtatggtctatcctggggcgatcaccatg
gcgaccaccacaccctcacctcagatgacatcagagtgctcgagtgcctcggcaagtccc
gagccaaccattcctgtcattcagagtaccttcaacatgaagctagagcccaacctcatg
gcaaataacactgtgccagtcaatggcgaggatgcgatggacatgtacgaggaatttgag
gatgagcccaaatcagactatagcagtgaaaatgacacacaggggcgagtcagcgccaac
tga
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