Notothenia coriiceps (black rockcod): 104943853 Help Entry 104943853         CDS       T04920                                  Name (RefSeq) protocadherin-16-like   KO K16507   protocadherin-16/23 Organism ncc  Notothenia coriiceps (black rockcod) Brite KEGG Orthology (KO) [BR:ncc00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04515 Cell adhesion molecules [BR:ncc04515]     104943853 Cell adhesion molecules [BR:ncc04515]  Cadherins   Cadherin related    104943853 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Cadherin Cadherin_CELSR2_9th Fibulin_C CADH_Y-type_LIR RIFIN TCL1_MTCP1 FeoB_associated Motif Other DBs NCBI-GeneID:  104943853 NCBI-ProteinID:  XP_010767620 UniProt:  A0A6I9N0Y0 LinkDB All DBs Position Unknown AA seq 2679 aa AA seqDB search VTATDADGGSFGSITYSLGSGMNSAAPSQFTIGKETGQICTSAALDRDQGPASYDFAVTA VDGGGLSSVTYVKVDLVDINDNRPAFYPVSYAVSLSTQSAPGTSVVRVTAYDPDSGENGK ITYKTVPGGASPYFTLNKDTGVISLSRSVYGKTNSVIPMVISAQDGGGLVARVNARVNIS VVAGLVAPPVFEQTQYYFTVSEDVLRGTVVGFVQASSKTGTSRDISYTISSGDPAGYFTV DPDTGALRTSLSLDHEAQSSLDLEVQARSGNPPAFGQTRVHITIADINDNSPVFLPSSSE SLLLPGHTEMGTVVYRVQAEDRDSGVNGQLTFDLNSPSGIQRTFSIERSSGEIRLVGSLN YESTPRYDLQVIAKDSGVPQLSATFMLVVHVQAENDQGPVFDTLTYRVELKEGTPLNTRF LQVRALNRETPGSGHFSPLAYHLRPDGDAAGFGIAADSGWLFVKSALDREVKDIYLLTVL ASQGQGQLKKTGSATVRIAVTDENDNSPRLTQERVFMAVRENLPAGSGFGHVTASDRDSG PNGRLSYRFLHPDRYFQINSNTGEISTRTTLDREQQSSYQLVVVVQDGGSPSRSATGTAF ITVLDDNDNSPAFTHSQSGKSVIIQVAEGQSSGVFLGSLQARDPDEGENGTIFYSLSGPR AECFSLNPNSGELRSSSPLSHSERAEYSLTVTATDRGLPPRSTPCSLTIQVLSTNRPTTK TNSFSMSFNSVEEAQPGSVIGSVRIRESEAPEVGELTYTLVGGTDRDGTFVVDRLNGDVY LARPLDYERDARYTLQIEVDDLSEANPSSTLVHLDIEVEDSNDHAPHFPEDPITIVISEN MEPGSSVYTFQATDKDGSGPNSELKYSILHQWPNTPGLLHLDSDTGVLSLGQVLDHEVTT NLILVVKATDSAQDASQRRWGSVTARLYVTDENDNPPVFRSPTAVSVMEDQPVGFVVLYV MAGDADQGENGRVSYSIQSGNTGGTFSLNPNTGSLSIFKPLDREEQDVFNLTITAEDHGI PQHSSSQLLCVHVIDVNDEVPWFEESQYEAQISENQPPGTSVLTVSASDLDQGTNGQVIY GSISEDGFSIHPVTGVITTTKSLDRELQEYYTVTVFAKDEGLPPNHAKATVKIRVLDEND NAPFFGHLYYSIKVPENLEALPLFTLKATDQDAGDSGEITYKIKAGDSLGDFRLDRQSGV LSTSRPLDRENRAGYTLTVTAQDEGHPSLSSTATVEVTVMDINDHSPQFQSSSYTADVSE DVHIGSLVLEVKAIDLDQGPNSQVLYYLSRGSNSMFIIDQNTGRIITAAPLDRERTASYS FEVVATDSSPANPRNSTVQVTVYIQDVNDNAPFFIQDPLIVNISASSVNSRRVLATMRAE DKDFGANGSVFYRFANPVRGFTINSLTGDIQATEKLQMLTHSQRTLIVQAMDQGNPSQSS LGVVIIYIREQSYRGIRFSRTARDISLQENSAKGTVVTQTQAQYPDGSQTGISYSIFSGN RLQSFGINAITGEIWVQRSDQLDFEETPKLRLVVKAETASSSSYMAVNLILQDVNDNLPR FQLQNYVAYIREAQGYDFPIIQVAADDRDQGQNGQVTYSIRSSSMSGLFKIDPLTGSVTT AAIMDREIWTQTKLVVTATDRGTPRLAGSATLTVIIIDLNDNSPMIPLHREIRVPEDAMI GSVITQVTGNDVDSGPALSYTLHLDANSQGLFGINRFGGAVSLTGLLDYEERTWYTLTVR SSDSKHQSEANITVLVDDVNDNAPTFTQDLYQVTVSEYLPAGSAVITVTATDRDSGENGK ITYRVMSSTRGVFYIDPSNGTLFVNQKTEFDFKNPSILVVIEVRDQGTPSLSSTATVEVQ VSDVNDNAPIFHQSEYRATVSEDGLPGSTVLTLEAVDGDLSRDNCGFDFAIASGNSGNTF QIESSVRFLEGHGFQTVGSLILVEELDFEAVPSYNLTVVVSDRGVPQRSSSVPIVISVTD TNDNPPAFSRVEYSVVLSEGAAAGTEILHLSATDPDSAPNGEVQYSISSGDETDLFQVDQ WTGALRLQRQLDSERQWSYVIVVQASDIQGHYALAPVSIEVKDINDNRPFFPLKTITASI RENKPQNALVTMLHAIDHDRGVFGQLRYYMLDNSKEGKEAFLMNQTSGEVRTRSTFDFEK VNSFHFVAVAMDAGNYSATVTVQVYVTGEDEYDPVFTSSEFSFEVPEGAKKGQIIGKVQA RDEDGGVDGIVLYSLEDSSPFFEVNKSTGAVSLKMDSYSTHRSRSKREVRLLTLDVTAHS PLESSRVAVAKVTVDVTHTSFGLTTDMNMLLISVIAVSLGTIVILIIIAVALFFVKLRRK KKDQKAHERPAPGTMMHKFEETKIAANEMIYHQTLPAYTPDQSGSSGGPYTRGGSLDPSH SSGRGSAEAAEDDEIRMINEYPRVSSISSSMQERISARGPDSGIQQDADQLSDVSCEPSI DWFKGKKLGSLNGTLLAGQVPVYRDEGGGYVGVGRGLNISHPKDYTFPEDGKPPVDGSLT AIVASDEELRGSYNWDYLLNWCPQFQPLANVFTEIARLKDESAPPNPRRSFHHKAKPESR IDPPPLITSVAHPGAKTVPPKPVVGRTFPNLASFRRSPLSAEGSISSVAMSPSFSPSLSP LAARSPAITPFSVSQGPSASMISTTEHHLEHIEEAELRI NT seq 8040 nt NT seq  +upstreamnt  +downstreamnt gtgacggcgaccgatgcagacggcggctcttttggatccatcacctactccctcggctcc ggcatgaacagcgccgctccctctcagttcaccattggcaaggagactggccagatctgc actagtgctgcactcgacagagatcaagggccggccagctacgactttgctgttactgca gtggatgggggtggactgagctcagtaacctacgtgaaggtagatctggtggacattaat gataacagacctgccttctacccagtcagctacgctgtcagcctgagcacacagagcgcc cctgggacatctgttgtcagagtgacggcctatgaccctgactcaggcgagaatggaaaa attacatacaagacagtacctggaggggcctccccttactttactcttaacaaagacaca ggtgtgatctccctgtctcggtcagtctatggaaagaccaactctgtcattcccatggtg atctctgctcaggatggtggtggtctggttgccagagtcaatgccagagtcaacattagt gtagtggcggggctggtggctccacctgtgttcgaacagactcagtactattttactgta tccgaggacgtcttgcgggggacggtcgtcggctttgtccaggccagcagtaagacaggc acctctagggatatctcctataccatcagctctggggaccctgcaggctactttacagtg gatcctgacacgggggccttaaggaccagtctatccttggatcatgaagcccaatcatct ctggatttggaggtgcaggcccgtagtggcaacccccctgcctttggccagacccgtgtc cacattaccatcgctgacatcaacgataactcgcctgtgtttctgccctcatcctctgag tctctgctgctaccagggcatacggaaatgggcacagtggtgtatcgggtccaggctgag gacagagactctggagtcaatggacaactcaccttcgatcttaactctccaagtggaatc cagaggaccttcagcatagagcgcagcagtggagagatccgattggtagggagcctaaac tacgagagtactcctcgttatgacctccaggtgattgccaaggatagtggagtaccccag cttagcgccaccttcatgcttgtggttcatgtccaggcagagaatgaccagggacctgtg tttgataccctcacctaccgtgtagagctcaaagaagggactcccttaaatacacgcttc ctgcaggtcagggctctgaacagagaaacccctggctcaggtcacttcagtcccctggca tatcacctgcgtccagatggagatgctgccgggtttggcatcgctgcagacagtggctgg ctgtttgtgaaaagcgccctagacagagaagtcaaggacatttatcttctaacggtgctg gccagccaaggtcaaggacaattgaagaagacaggtagtgccacagtgcggatagcagtg actgatgagaatgacaactctcctcggctcacacaggagagggtcttcatggctgtgaga gagaacctgccagcaggatcaggctttggtcacgtcacagcctcagatagagacagtggc cccaatggacgcctcagctaccgcttcctgcaccctgatcgctactttcagataaactcc aacacaggtgagatcagtacaaggaccactctggacagagagcagcagtctagctaccag ctggtggtggtggttcaagacggtggttcgccctctcgcagcgccacaggcacagccttc atcactgtgcttgatgacaatgataacagccctgctttcacccacagccagtcaggaaaa agtgtcatcatacaggttgcagaaggtcagtcctctggggtatttctcggctcgctgcag gccagagacccagatgaaggagagaacggaaccatattctactctttgtcaggtcccaga gctgagtgtttctctttgaacccaaactctggggagttgcgttcatcctcccctctgagc cactctgagcgggctgagtactctctgacggtgaccgctactgacagaggactgccccct cgcagcaccccctgctccctcaccattcaggttctcagcactaacagacctactactaag accaattcattctccatgtccttcaactctgtggaggaggcccaacctggatcagttatt ggctcagtccgtattcgtgaaagtgaagccccagaggtaggggagctgacctacacattg gtggggggtacagaccgagatgggacctttgtcgtagatcgcttaaatggagacgtgtac ctggctcgtcctctcgactatgaacgagatgcccgctacactctgcagatcgaggtggat gacctctctgaggccaatcctagcagcaccctggtccacctggacattgaagttgaggac agcaatgaccacgccccacatttcccagaggatcccattaccatcgttatatccgagaac atggaacctggctcttccgtttatacttttcaggccacggataaagatggcagtgggccc aacagcgagctgaagtactccattctccaccagtggccaaacacccctggtctactgcac cttgactctgacactggggttctctccttgggtcaggtgttggaccatgaggtcaccact aacctaatactggttgttaaggcaacagattcagcccaggatgccagccagaggcgctgg ggtagtgtcacggcaaggttgtatgtaacagatgagaatgacaatccaccagtgttcaga tcgccaacagctgtcagtgtgatggaggaccagccggtgggcttcgtggttctgtatgtg atggccggagatgcagaccaaggggaaaatggcagagtgtcctacagcatccaatcaggc aacaccggaggaacattcagcctcaaccctaacactggctctctgtctattttcaaacct ttggaccgtgaggagcaggatgtctttaacctcaccataaccgctgaggatcatgggata ccccagcactcctccagccagctgctgtgtgtccacgtgattgatgttaacgatgaagtg ccctggtttgaggagagccagtacgaggctcagatctccgagaaccagccaccaggaact agtgtgttgacagtgtccgcctctgatctggaccaaggaaccaatgggcaggtgatatat ggtagtatctcagaggatggtttcagcatccacccagtgacaggtgtcataacaaccact aagtctctggacagggagctccaggagtactacaccgtgacagtttttgcaaaagatgaa ggccttccccccaaccatgccaaagccacggtgaagatcagagtgcttgatgagaatgac aacgcccctttctttggacacctttactacagcattaaggttcctgaaaacctggaggca ttgcctctgtttaccttaaaagccactgaccaggatgcaggagatagtggggagattact tacaaaattaaagctggagattcattgggagactttcgcttggacagacagtcaggtgtg ttgtccacttcaaggcctctggatcgagagaacagggctggttacacgctaacagtcaca gctcaggatgagggccacccttccctcagcagcactgccaccgtggaggttaccgttatg gacatcaacgatcacagcccccagtttcagagcagcagctacacagcagatgtctcagaa gatgttcacattggctcactggtcctggaagtcaaagccattgatctagaccagggcccc aacagccaggtgctttactacctgagccgtggctctaacagcatgttcatcatagaccaa aacactggccgcattatcacagcagcacccttagacagagagaggaccgcctcttactcc tttgaggttgttgccactgactcctcgcctgccaacccacgtaactccactgtccaggtg accgtctacattcaggatgtgaacgacaatgcccccttcttcattcaggacccacttatt gtgaacatctctgccagtagcgtgaacagccgcagagtgctggccaccatgagggcggag gacaaggactttggggctaatggctctgtgttttatcgcttcgccaaccctgtgaggggc ttcaccatcaactcactgacaggagacatccaggccacggagaagctgcagatgctgacc cacagccagaggactttgatagttcaagccatggaccagggcaacccatctcaatcttcc ctcggagtggttattatttatatcagggagcagagctacagggggatccgcttctctcgc acggctcgagacatcagtctgcaggagaactctgctaaaggcacagtagtaacacagact caggcccagtaccccgatggctcccaaacgggtatcagctacagtattttcagtggaaac agactgcagtcttttggaataaacgctataactggtgagatatgggtgcagagatctgac caactagactttgaggagaccccaaaactccgccttgtggtgaaagccgagacggcatcc tccagctcctacatggctgtcaacctcatcctgcaggacgtcaatgacaacttgccccgc ttccaactccagaactatgtagcctacattagagaggcgcagggctacgatttccccatt attcaggttgctgcagatgaccgggaccagggtcaaaacggtcaggtgacatactctatc aggtcatcatccatgagcggattgtttaagatagacccactgaccggcagcgtcaccacc gcagccataatggaccgagagatctggacgcaaaccaaacttgttgttacggcaacagac cggggaaccccgcggctggctggctctgccaccctcactgtgatcatcatcgacctcaac gacaacagccccatgattcctctacatcgggagatccgggtgcctgaggatgcgatgatt ggctcagttatcacccaagtaacagggaatgacgtggactcagggccagccctctcctac acactacacctggacgcaaacagccaaggcctgtttgggattaatcgtttcggaggagca gtgtctctgactggccttctggattatgaggaaaggacgtggtacacattaacggtccgc tcatctgactctaaacatcaaagcgaggccaacatcactgtgctggtggatgatgtgaac gacaacgcccccacctttactcaagacttgtatcaggtgactgtatcagagtacctccca gcaggcagtgcagtcatcacagtaacagccacagatcgtgactccggggagaacgggaaa attacttacagagtaatgtcatccactaggggcgtcttctacatcgacccaagcaacggt actctgtttgtcaaccaaaaaacagagtttgattttaagaatccctccatcttggtggtt attgaggtgcgtgatcagggcactccatcgctttcatccactgccactgtcgaggtccaa gtttctgatgtcaacgacaacgcccccatcttccatcagtccgagtacagagccactgtg agtgaagacgggcttcctggatcaactgtgctaaccttggaagctgtggacggagacctg tcccgggacaactgtggttttgattttgccattgccagtggcaactcgggtaataccttc cagattgagagcagcgtgcgtttcttggagggacacggcttccagacagtgggcagcctg atcctggtggaggagctggactttgaagcggtgccaagttataacctgactgttgttgta tcagaccgtggagtccctcagcgcagctccagcgttcctatcgtcatcagcgtgacagat accaatgacaaccctccagctttcagccgagtggagtacagtgtagtgctgagtgagggt gcagctgcagggacagagatcttgcatctatctgccacagatccagactctgctcccaat ggagaggtgcaatactccataagctcaggggacgagacagaccttttccaggtggaccag tggaccggagccttgaggctgcagagacagctggacagcgaaagacagtggtcttatgtg attgttgtgcaggccagtgacattcaagggcactacgctttggccccagttagtattgag gtgaaggacattaacgataaccggcccttctttcccctcaaaacaattactgccagcatc agggaaaacaaaccccagaatgccttagtcaccatgctgcacgctatcgaccatgacagg ggggtttttggacagttgaggtactacatgttagataactcaaaagagggaaaagaggcc ttcctcatgaaccaaacatcgggagaagtacggactcgctctacttttgactttgagaag gtaaactccttccattttgtggctgttgccatggatgctggcaactattctgctactgta acagtgcaggtttatgttacaggggaggatgaatatgatcctgttttcacctcctcagag ttctcatttgaagtgcctgagggagccaagaaaggtcaaatcattggcaaagtgcaagcc agagatgaggacgggggcgtagatggcattgttctttactcattggaagacagttcgcct ttttttgaagtcaataaatccacaggagcagtttccctaaagatggacagctacagtaca cataggagtcgctccaaaagagaggtgcgtctactgacactggatgtgacggctcacagc cctctggagtcatcccgcgtagcagtggccaaagttactgtagatgtgacccatacatca ttcggcctcaccactgacatgaatatgctacttatcagcgtcattgcagtttcacttggg accatagtcatactaataataattgctgtggcgctcttttttgttaaattgcgacgtaag aagaaggatcaaaaagcgcatgagagacctgcaccgggaaccatgatgcacaagtttgag gaaacaaagatagcagcaaatgaaatgatttaccatcagacccttcctgcatacacgccg gatcagagtggcagcagtgggggtccgtacactcgtggaggatcactggatccctctcac tccagtgggcgtggctctgcagaggcagctgaggatgatgagatccgaatgataaatgaa taccctcgagtatcaagtatatcatcctccatgcaggaacgcatctctgcccggggtccc gactctggaatccaacaggatgctgaccagctgtcagacgtgtcctgtgagccgtccata gattggttcaaggggaagaaactgggcagtctgaatggcactctgttagctggccaagtg ccagtctacagggatgaggggggtgggtatgtaggtgtgggaaggggactcaacatctcc catccaaaagattacactttcccagaggatgggaagcctcctgtggacggctcgctgact gccatcgtggccagtgacgaggagctgagggggagctataactgggattacctgctgaac tggtgcccccagttccaacctttagcgaacgtttttactgagatagcacggttaaaagat gagtcggctcctccaaatcctcgcaggtcatttcaccacaaagcaaaaccagagtcaaga attgaccccccgcctctcataacctctgtggcccaccccggggccaaaactgtacccccc aaacctgttgtagggaggacgtttcccaacttggcttctttccgaagatctcccctcagc gcagaggggtccatctcctcagtcgccatgtctccaagtttctccccctctctgtccccg ctggcagcccgctcccctgcaatcacacccttcagtgtctcacagggcccctccgcatca atgatcagcacaacggaacaccatttagagcatatcgaggaggcagagctgaggatttaa

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