Notothenia coriiceps (black rockcod): 104944126
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Entry
104944126 CDS
T04920
Name
(RefSeq) versican core protein-like isoform X1
KO
K06793
versican core protein
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04514
Cell adhesion molecules
ncc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
104944126
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104944126
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ncc00535
]
104944126
00536 Glycosaminoglycan binding proteins [BR:
ncc00536
]
104944126
04091 Lectins [BR:
ncc04091
]
104944126
Proteoglycans [BR:
ncc00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
104944126
Glycosaminoglycan binding proteins [BR:
ncc00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
104944126
Lectins [BR:
ncc04091
]
C-Type lectins
Group 1: Proteoglycan core proteins
104944126
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lectin_C
EGF
Sushi
hEGF
EGF_2
Motif
Other DBs
NCBI-GeneID:
104944126
NCBI-ProteinID:
XP_010767903
UniProt:
A0A6I9MX86
LinkDB
All DBs
Position
Unknown
AA seq
2951 aa
AA seq
DB search
MSSKDTTVPTSSSLFSTEKSTVLSIGEQASATTAQTERSSVSAITDKTVQSAMVTKAAED
GSGDQTSDMYTDISSLINVTKLPSFTGEPSISPSSDETLTSSMTMSPSWASVKSSVMEMD
DDSISSISTMVESIPSFSGPTMGPGTASLAVQPTTQAEKSGDSSVDFTAESLLQATTLSS
MLNTETPSVTATSQTERLSATPETSSTLSKTDEDGSGDQTQYMFTQSSSVTSKTSLFSTE
APTATSPVTSSAVSDIKDQDISSGTIKADSVLTSIGSTLKPETSSLLIPTGTEGSGDITH
DFPQESTIRATTFSSLSSTKSPSVTASHETGTSDTLKTAITRASSLYSTEKPTSGSAKTQ
DTVTTSLTSKTSATPEISPTLSKTDSTDNFTKAPFTTVTAVLSMSSTDLPPITASRETET
SKTSAIQIIEDLETSSTISFSEEDGSNGHTTAILTEESSTLSFVPTTDQKGNPSSHSAIV
IGSSRETVTASPSSTSPSIPIIDESELIYQTTTVAGKKSTFSSMFSTERPTVTTGLLEPD
QIYTSESTITSPPTDISSSSLFSTAKPMITTVASVAATKTMTDITSSLHSTEKPKVVSAS
TMHAEGSGDQFTDMSAQISAVTDSSVATSSHGTKIIDVLKSQVTIASSLYSTEKPTLVPP
TASIESKTKIPFSTATDTIEIAETQTTSQPIVESSSQTTSLLMKEDSTDVTHFSTTIEAT
SVSDSDTSESTDKTPTTTAFDQHTIMTSEPSIASTFMGGESSSAGDFTTVPTSTFTLGTS
QPMAIPSVTVYTLKETSTFIDMESSGSSTDEDDLESSTDGSGAGISIETTIKPQKEFTEA
IDETEFDDKVSTPDMLSVASSTQSNTQLTKEFMTSTQSPHLTSSEHFITEQGSGVFTDDS
TLEDESSGDDLSDGPTTFEPVTSHPLSTTVAATKGIMLSSSAVAFPEESSSDQTTALLDI
KDIEIKSTASSLFSTETPKTTTSLHESGPYVSTSAQTVSSSLYSTEKPNITVYAVTSAQL
GNTSLSATATSTPSSAFTFGEATGETETLVSFTATTDEQVSSQSGDIAPDTERPIASEST
VPSVSSIDQEEFTLAEHITQSSYTTVSPHTKEASVSDHSAIDFTTESSSTEHKQTVGTMM
SPPIPSIIYQSITDQQVVIITPSSSIAKTDLTEQTPTMVLHVSKPSDSTTIIFTEDAKDE
DELFSTATDSMREGSPTPELITKDDNIIDADTISIVPSSSFYPTIQTEEAGGVTPITMSQ
MLEVTEQSEGSGTDATFFTPTPVTLHATSITELALAFSSSEYSTPTPKPTIVEGVSSMET
SSEEVETSSEEVVTSSEEVVTSAPQATPANTLSTNSVSQVTHLTTPYTVFPNETQSKPVP
ELVDNDFSGDDTADNVTESITEIAASSFVPSQTLTETTDSSSITPVSSEEYMFSTVEKEN
NMTSLPTAVPDTSHGPTDETLSVTISTQTVAATQLTSVSTEPGTLKTTSKAFNEEFSGDD
SSEWTASEKTTSTSTVSLLFSTEKPTVAPEQRHTNGVIPGEQNQSMFTEGIITTDKAEHI
SPTSPGTATGEFTKSPASAPSSLYSTGKPSVTVLKDVTDADTSMYPTSAPLTTSTFNMKV
EPVTFSVTSTEPAMEHIAIAVSHTASSLYSTEKPTVTSSPDVTGKDSSDDYTVTKPATQK
DTLLHSTMDQLLSTMTSPPHYSTDTFLIPSNIDVVGSGDYLSETTTASSKTLTIKTENTV
APPLSHHFSTEKPTTMTLEYTTQMSEITTELVKASSSETVSTPTNGALSTPAHEESTRDH
VTSKSTKESTSTLTVSSLSSSPKPDVMVQFVTTYVPEPDTAQSEVSFQQARSEIMFTHHP
HIEISSEKTVLATTSPMMPSEESSQHFEPSDVISQTAITPSSLKEKTAEAQSQAAMTNEV
STDARGSTVEDSKTSVDDSITSHLTDQTVYSKGTEPSSADSSSVETSAVSSSEQTLEATA
SSLSMPTKAMPSSTVSSPFSTETPLVASISDVTDRVSFEKSSTTLPKTVTGKTGETATSP
STYQKSTAVSSFSSTSSESEDIPVLTETTMSILTEEEGSGSVTPDVSSVSGTIDLDITTS
TLSPEMANTQTDQLEPSTSEQTSGPKATETFITDAYATQYRAVTSTEESPNTLTSVESGS
TASESEETQDADLTSTHQPIGVTHAAEISMSSETKVVVTTMPTEHISLESTSNVPSKSSP
SQPEVMVQFLTTFSPAEHLTTPQRSFEQARSEIAITHMPHTDLSSHDISLTTTRPMFTSH
EANQITESTTVPATSSSVAEAVSASVEDETVESLNPGAKPEPSPDTVHQPTSLENIYNDN
TDYPVPDYEDPNLTIVESTPPSNKTKTSQDTAVFLTTPAVAPQPSESQPTDSVSSSGSSS
EERSSTKSPVEAAAAITFLPSASAPVSTASSSSSESGSESISSSGESMLIKIDNNEVANV
TPEMISATTRSPFILSTRAESGSVSSESASSSSENVSDEITITTKKPKIINTEQQSLSLD
EILTVFKVNATTASKIESTSVDSTSGKEDESKMDVSTYTEIPTRTQTEFTTAPAQAQSHS
VLDASLATTPSSFSEEQHNDTTVIKGEPPLTGEETTALADIGFELGHTVDGETVEIQDSC
TENICLNGGSCFKSGSIYTCSCTPGYGGYRCETDIDECQSNPCRNGGTCFDRLAYFTCVC
LPSYSGLYCEEDTETCDYGWHKFQGHCYKYFPQRRNWDTAERECRMHGAHLTSILSLEEQ
HYVNRLGQDYQWIGLNDKMFDSDFSWTDGRPVQYENWRPNQPDSFFSSGEDCVVMIWHED
GQWNDVPCNYHLTYTCKKGTVACNQPPLVENARTFGKKRERYEINSLVRYQCRTGFIQRH
VPTIRCRGDGRWDSPKIACNNPSSYQRNVFQKHQHKSLYSVNNFKSSPDAAFHHQRYRGR
RERTEHKQNRK
NT seq
8856 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaagacactacggttcctacatcttcttcgttgtttagcactgagaaatca
actgttctttccattggggaacaagccagtgctaccacagctcagacagagaggtcttca
gtctctgcaataactgataagacggtacaaagtgccatggtcactaaagcagctgaagat
ggctcaggtgaccaaacatctgacatgtacactgatatctcttccctcataaatgtcaca
aaactgccatcatttacaggagaaccatccatttcgccatcctctgatgagacactcaca
agctcaatgacaatgtctccaagttgggcatctgttaaatcctctgttatggaaatggat
gatgattctatcagcagtatatctacaatggtggagtccattccttcattcagtggacca
accatgggccctggaactgcatcattggcagttcaaccaaccactcaagctgaaaagtct
ggagacagcagtgttgatttcaccgcagagtccttacttcaggcaaccactctgtcctca
atgttaaacactgaaactccatcagtgactgccacaagtcaaacagaaagattgtcagct
acaccagagacaagttctactctctcaaaaacagatgaagatggctcaggtgaccaaacc
caatacatgttcacgcagtcttcgtctgtcacgtctaaaacctctctgtttagcactgag
gcaccaactgcaacatctccggttacatcatctgctgtttcagacattaaggatcaagac
attagcagtggaactataaaggctgattcagttcttacctcaattggatcaacccttaaa
ccggaaacatcatcattgctcattcccacaggaacagagggttctggagacatcacccat
gattttcctcaagagtcaaccatcagagcaactactttctcttcattgtcgagtacaaag
tcaccatcagtgacagcatcacatgaaactggaacaagtgacactttgaaaacagctatt
accagagcttcatcattatacagtactgagaaaccaacatctggatcagctaaaactcaa
gatactgttacgacaagtctaacaagtaaaacatcagctacaccagagataagtcctact
ctctcgaaaacagacagcactgacaatttcactaaagcgcccttcaccacagtaactgct
gtcttatcaatgtctagcacagatttgccaccaatcacagcatcacgtgaaactgaaaca
agtaaaacttcagcaatccagatcattgaagatttggagacaagttctacaattagtttt
tcagaagaagacggctcaaatgggcacacaactgcaattctaacagaggaatcatccact
ctgtcttttgtgccaactactgaccaaaaagggaatccaagcagtcactcagctatagtt
attggcagctcacgggaaacagttactgcatctcctagctccacaagcccatccattcct
ataatcgatgagagtgagttgatttatcaaaccaccactgttgctggtaaaaaaagcact
ttttcttccatgttcagcacagaaagaccaacagtaaccacaggattacttgaacctgac
caaatttatacctctgaatctactattacgtctcctccaactgacatctcatcatcctct
ttgttcagcacagcgaaacctatgatcacaactgttgcaagtgtggcagccacaaagaca
atgacagatattacttcatctcttcacagtactgaaaaacctaaagtggtttcagcgagc
acaatgcatgcagagggctctggtgaccagttcactgatatgtcggctcagatctcagct
gtgacagattcttcggttgcaacctcctctcatggcactaaaatcattgacgttttaaaa
tctcaagtaaccatagcttcttctctctacagtactgagaaacccacactagtaccacca
actgcatccatcgaatctaaaaccaaaatcccattttctacagccacagatacaattgaa
atagctgagactcagaccacatcacaacctattgttgaatcatcatcccaaactacttca
ctgttgatgaaagaagactctacagatgttacccacttttctaccacaattgaggctact
tctgtatcagactctgacacatctgaatccacagataaaactccaacaacaacagccttt
gatcaacacacaataatgacctctgagccatcaattgcctccacttttatgggaggagaa
agttcaagtgcaggagattttacaacagtcccaacaagtacttttaccttgggaacctct
caacccatggcgatccctagtgtcactgtgtataccttaaaggaaacctccacatttatt
gacatggagagctctggcagctctaccgatgaagatgatttggaatctagtacagatgga
tctggtgcagggatatccattgagactaccataaaaccccagaaagaatttactgaagcc
atagatgagactgaatttgatgacaaagtgagcacccctgacatgttaagtgtcgcatcc
tcaactcaatccaacacacagcttaccaaggaatttatgacatcaactcaatcaccacac
ctgacaagcagtgagcattttattactgaacagggcagtggggtcttcacagatgactct
acattggaggatgagagttcaggtgatgatctttctgatggaccaactacatttgaacca
gtcacaagtcatcccctgtccacaactgttgcagctacaaaaggaatcatgttatcatct
agtgctgttgcttttcctgaggagagctcaagtgaccaaacaactgctttattggacatt
aaagatatagagataaagagtacagcttcttccctattcagcacagagacacctaaaaca
acaacatcattgcatgaaagtggaccatatgtttcaacatctgctcaaacagtatcatct
tctctctacagcactgagaaaccaaacataacagtatatgctgtaacatctgcccagttg
ggtaacacgtctttatctgcaacagctacatcaacaccaagttcagccttcacatttgga
gaagccacaggtgaaactgaaacccttgtgtctttcacagcaaccactgatgagcaggtt
tcctcacagtcgggggacattgctccagatacagaaagacccatcgcttctgaatcgaca
gtgccttctgtctcaagcattgaccaggaggaatttactctagccgagcacataacgcag
tcatcctatacaactgtctccccccatacaaaagaagcgtcagttagtgatcactctgca
attgacttcaccacagaaagctcaagcactgaacataagcaaactgtaggcacaatgatg
tccccccctattccctccattatatatcaaagcatcacagaccaacaggttgtcatcatt
actcccagtagcagcatagccaaaactgacctaactgaacaaacacctaccatggtcctg
catgtgtctaaaccatcagacagcacaaccatcatattcacagaggatgcaaaagatgaa
gatgagcttttctctacagctacagacagtatgagggaaggaagccccactcccgaactt
attaccaaagatgataatatcattgatgcagacactatctccatagttccctcttcttcc
ttttacccaacaattcagacagaggaagctggaggtgtcacaccaattacaatgtctcaa
atgttggaagtaacagaacaatcagaaggttcagggactgatgccaccttctttactcct
acaccagtaactttacatgcaacctcaatcactgaattggcattagccttttcgtcttca
gaatattcaacacccactccaaaaccaacaattgtggaaggtgtatctagtatggagaca
tctagtgaagaggtggagacatctagtgaagaggtggttacatctagtgaagaggtggtt
acatctgcaccacaggccactccagctaacactctgtccacaaattcagtctctcaagta
acccatttaactacaccatatactgtatttcctaatgagacacaatcaaaaccagttcca
gagctggtggacaatgacttttcaggcgatgacactgctgataatgttactgagtctatc
actgagattgctgcttcatcatttgtgccttctcaaactttaactgaaacaacagactca
agctcaatcacaccggtgtcaagtgaggagtatatgttcagcacagtagaaaaagaaaat
aacatgacatccttacccacagccgttcctgacacaagtcatggcccaacagatgaaaca
ttaagtgtgaccatttccacgcaaactgttgctgccacacaacttacatcagtgtccact
gaacctggcacactcaaaacaacgagtaaagcttttaatgaagaattttcaggtgatgac
tctagtgaatggacagcatctgagaaaacaacatcaacatctacagtctctttactgttc
agcactgaaaaaccaactgttgcccctgaacaaagacatacaaatggggtgattccaggt
gaacaaaatcaaagtatgttcactgagggcataataacaacagataaggcagaacacatc
tcaccaacctcacctggcactgccacaggagagtttacaaagtcaccagcaagtgctccc
tcttctctttatagtacagggaaaccatctgtcactgttttgaaagacgtaactgatgca
gacacttcaatgtatccaacttctgctccactaacaacttcaaccttcaacatgaaggta
gaaccagtaacattttccgtgacctcaactgaacctgccatggagcatatagcaattgca
gtatcacatactgcttccagtctttatagcactgagaagccaactgtcacatcatctcct
gatgttactgggaaggatagctctgatgattacactgtcacaaaacctgcaacacaaaaa
gatactcttctgcacagtacaatggaccaattgctttccacaatgacatcacctcctcac
tacagcacagatacatttttaatcccaagtaacattgatgttgtaggctctggagattac
ctttcagaaaccacaactgcatcatctaagactttgacaatcaagactgaaaatactgtg
gcccctccactctcccatcatttcagcacagagaaacccaccacaatgaccttagagtat
acaactcaaatgagtgagataaccacagagttagtgaaagcatcatcatcagaaacagtt
tcaactcctaccaatggtgcattatcaaccccagcacatgaagagagcacaagggaccac
gttacctctaaatctacaaaagaatcaacttccacattgacagtatcttctctttcaagc
tctcccaagcctgatgtaatggttcagtttgttactacttatgtacctgaaccagatacg
gcacaatctgaggtgtccttccaacaggcccgctctgagatcatgttcactcatcatcca
cacattgaaatctcctctgagaaaactgtgttggccacaaccagcccaatgatgccaagt
gaggagtcaagccagcactttgaacctagtgatgtgatttcccagactgcaattacaccc
tcatcactgaaagagaaaacagctgaagcacagagccaagcagctatgaccaacgaagtt
tcaactgatgctagaggtagcacagttgaagatagtaaaacatctgttgacgactcaata
acttcccatcttactgatcaaactgtttattctaaagggacagagccttcctctgcagac
tcaagctcagtggaaacatctgcagtgagttcaagtgaacaaactctagaagcaacagct
tcttcactttcaatgccaacaaaagcgatgccatcctcaactgtgtcctcaccttttagc
accgagactccattggttgcttccatttctgatgtcactgatcgagtgtcttttgaaaag
tcatcaacaacattgcccaaaacggtgacaggaaagacaggagagactgcaacttcccca
tccacctatcaaaagtcaactgcagtgtcaagtttttcaagtacatcatcggagagtgag
gacatccctgttttaacagaaacaactatgagcattttaacagaagaagaaggttcaggt
tctgtcactccggatgtttcctctgtttccggtactattgatttggatataaccacaagc
actttatcacctgagatggcaaacacccaaacagatcaactagaaccctctacctctgaa
caaacctcaggtccgaaggcaactgagaccttcatcactgacgcttatgcaacacaatac
cgtgctgtgaccagcactgaagagtcaccaaatacattaacttctgttgaatcaggttca
acagcttctgaaagtgaagagacacaagatgcagacctaacaagcacacatcaacctatt
ggtgttactcatgcagcagaaatctctatgagttcagagactaaagtagtagtcaccaca
atgccaacagaacacatttcccttgaatctacttcaaatgttccctcaaaatcatcacca
tcacagcctgaagtcatggtccaatttctcacaacgttttcccctgcagaacacctaacc
actccccagaggtcatttgaacaggccagatcagagattgcaataacacacatgcctcac
actgatctttcttctcatgatatatcactgaccacgactcgccctatgttcacaagtcat
gaagcaaaccagattacagaatcaacaactgtgcccgctacctcttcttctgtggctgaa
gctgtttctgcttcagtggaagatgagacagttgaatccttgaatcctggtgcaaagcca
gaaccatctccagatacagttcaccaacccacctctttagaaaatatatataatgacaat
acagattatcccgtcccagattatgaagatccaaaccttaccattgttgaatcaactcca
ccatccaataaaaccaaaacatcacaagacacagcagtgttccttactacaccagctgtt
gctcctcaaccatctgagagtcaacctactgactcagtaagcagttctggaagtagctca
gaagaaaggtcttctacaaagtctcccgtagaagcagcagcagctatcactttcttgcct
tctgcttcagctcccgtcagtacagcatcctcctctagttctgagagtggttcagaaagc
attagcagctcaggagaaagcatgttgatcaagatagataataatgaagttgcgaacgtc
acacctgaaatgatatctgccacgactaggtcaccatttatccttagcactagggctgaa
agtgggtccgtcagttctgagagtgcatcctccagctctgagaatgtgtctgatgaaatt
acaattactacaaagaaaccaaagatcatcaatacggagcaacagtccctgtccctagat
gaaattctgacagtattcaaggtcaatgctacgacagcctcaaagatagagtccactagt
gttgatagtacctctggtaaagaagatgagagcaaaatggacgtctctacttacactgaa
atacccacaaggacccaaacagagttcacaacggcaccagctcaagcccaaagccattca
gttttggatgcatctctagccaccactccgtcatctttttctgaggaacaacataatgac
acaacagtcattaaaggagaaccaccactaacaggggaggaaacaactgcattagctgac
ataggattcgagttggggcacactgtcgatggcgagacagtcgaaatacaagactcgtgt
acagaaaatatttgtctcaatggaggatcttgcttcaagagtggcagcatctatacgtgt
agctgtactcctggttacggtggttatcgctgtgaaacagacatcgatgagtgccagtca
aacccatgccgcaatggaggtacatgttttgatcggctggcctactttacttgtgtctgc
ctaccaagctactctgggctgtattgcgaggaggatacagaaacatgtgactatggctgg
cataagttccagggccactgctacaagtacttcccccaaagaagaaactgggacacagca
gagagagagtgtcgcatgcatggggctcatctcaccagcatcctctccctcgaggagcaa
cattatgtcaaccgtcttggacaggactaccagtggattggcctgaatgataagatgttt
gacagtgatttcagctggactgacggcagacctgtgcaatatgaaaactggagacccaac
cagcctgacagcttcttctcttctggtgaggattgtgttgtgatgatatggcacgaggac
ggccaatggaatgatgttccttgcaactaccatctgacctacacttgcaaaaagggcaca
gtggcctgtaaccagccccctctggtggagaatgcacgtacctttggtaaaaagcgtgag
aggtatgagatcaactcgctggtgagataccagtgtcgaacaggctttattcagaggcac
gtcccaactatccgttgtcgtggagatggacgatgggatagccctaaaatagcctgcaat
aacccatcaagctatcagaggaatgttttccaaaaacatcaacacaagagtctctacagc
gtaaacaactttaaaagttctccggacgcagcctttcaccatcagcgctaccggggaaga
agagagagaactgaacataagcagaacagaaagtaa
DBGET
integrated database retrieval system
