Notothenia coriiceps (black rockcod): 104944135 Help Entry 104944135         CDS       T04920                                  Name (RefSeq) collagen alpha-1(I) chain-like   KO K06236   collagen type I alpha Organism ncc  Notothenia coriiceps (black rockcod) Pathway ncc04510   Focal adhesion ncc04512   ECM-receptor interaction ncc04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:ncc00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     104944135  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     104944135   09142 Cell motility    04820 Cytoskeleton in muscle cells     104944135  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ncc00536]     104944135 Glycosaminoglycan binding proteins [BR:ncc00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    104944135 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI Motif Other DBs NCBI-GeneID:  104944135 NCBI-ProteinID:  XP_010767913 UniProt:  A0A6I9MX97 LinkDB All DBs Position Unknown AA seq 1317 aa AA seqDB search MDGQPGRPGLGGNFSPQMSGGYDDKSPGMSVPGPMGPMGSRGSPGAPGSSGPQGFTGPPG ESGEAGSSGAMGPRGPAGPSGKNGEDGESGKPGRNGERGPSGPQGARGFPGTPGLPGIKG HRGFSGLDGAKGDGGPAGPKGEAGSAGENGTPGAMGPRGLPGERGRNGASGAAGARGNDG AAGSAGPNGPTGPSGPPGFPGGPGSKGDAGAQGTRGAEGPAGARGEGGNPGPAGPAGPSG SPGTDGAAGAKGNLGAAGVAGAPGFPGPRGPPGAQGAGGAPGAKGNTGEAGAPGSKGEAG AKGEAGIAGVLGAPGPGGEEGKRGSRGEPGVAGSRGGPGERGAPGGRGFPGSDGPAGAKG ANGERGGPGAIGAKGSSGESGRTGESGLPGAKGITGSPGSPGPDGKTGPAGSTGQDGRPG PPGPVGARGQPGVMGFPGPKGVAGEGGKSGERGVMGPTGALGAPGKDGDLGAPGPSGPAG PSGERGEQGAGGAGGFQGLPGPQGAIGESGKPGEQGLSGEAGVSGPAGNRGDRGFPGERG SPGVNGPAGARGSPGSGGNDGAKGDAGAPGNSGAQGPPGLQGMPGERGAAGLPGLKGGRG DQGGKGADGAGGKDGPRGLTGPIGLPGPGGSSGDKGDAGAPGPGGPAGSRGGPGERGESG PPGPAGFAGPPGADGQPGGKGESGDNGGKGDAGPPGVSGPTGGAGPQGPNGNSGPKGARG TAGPPGATGFPGAAGRVGAPGPSGNSGPAGAPGAGGKEGPKGNRGETGIAGRAGEMGAAG PPGSAGEKGGPGGEGSSGAPGTSGPQGIAGSRGIVGLPGQRGERGFPGMNGPSGELGKPG PSGPGGERGPSGSMGPAGLAGASGETGREGSPGNEGSSGRDGPAGPKGERGEGGPSGASG APGPSGAPGPVGPAGKNGDRGESGSAGPAGASGSAGPRGPAGPAGLRGDKGESGEAGERG LKGHRGFTGMQGPIGPSGSNGEAGPAGTSGPAGPRGPSGSAGSSGKDGMSGLPGPTGPPG VRGRSGEMGPSGPPGPPGPAGAPGAPGGGFDLGFISQPQEKAPDPFRMFRADDANVLRDR DLEVDGTLKSLSQQIEQLRSPDGSRKNPARTCRDLKMCHPEWKSGQYWIDPDQGCTQDAI KVYCNMETGETCVSSTQPEVAKKNWYTSKNIKEKKHVFFGEAMTEGFQFEYGSEGSMPQD VNIQLTFLRLMSTEASQNITYHCKNSVAYMDASAGNLKKAMLLQGSNEIEIRAEGNSRFT YSVLEDGCTSHTGTWGKTVIDYKTTKTSRLPIIDIAPMDVGAPDQEFGIEVGPVCFL NT seq 3954 nt NT seq  +upstreamnt  +downstreamnt atggatggccagcccggccgccccggcctcggagggaacttctctcctcagatgtccgga ggctatgacgataaatcacctggcatgtctgtgcccggacccatgggacccatgggatcc cgtggatcccccggagctcctggatctagcggacctcagggattcaccggcccccccggt gagtctggagaggctggatcttctggtgccatgggaccccgtggccccgccggaccctct ggcaagaacggagaggatggtgagtctggcaagcccggtcgcaacggtgagcgtggacca tccggcccacagggcgctcgtggattcccaggaactccaggtctgcccggcatcaaggga cacagaggattcagcggtctggatggagccaagggagacggcggacccgctggacccaag ggagaggctggatctgctggtgagaacggtacccccggagctatgggaccccgtggactg cccggtgagagaggtcgcaacggtgcttctggagctgctggagctcgtggtaacgacggt gccgctggttctgctggacctaacggacccactggcccatctggacctcctggattcccc ggtggccctggatctaagggagatgctggagctcagggaactcgtggagccgaaggaccc gctggagcccgtggtgagggcggtaaccccggacctgctggccccgctggaccttctgga agccccggtactgatggagctgccggagctaaaggaaaccttggtgctgctggagttgca ggagcacctggtttccccggaccccgtggaccccctggtgcccaaggtgctggtggtgcc cccggagccaagggaaacactggtgaggctggagccccaggatccaagggagaggctgga gccaagggagaggctggtattgctggagttctgggagccccaggaccaggaggagaggaa ggcaagagaggatccagaggagagcccggtgttgcaggatctcgtggaggcccaggagag agaggcgcccctggcggtcgtggtttccccggatctgatggacctgctggtgccaaaggc gccaatggtgagcgcggtggccctggagccattggagctaagggttcctctggtgagtct ggtcgtactggtgagtccggtcttcctggagctaagggtatcactggtagccccggcagc cccggacccgatggcaagactggacccgctggatccactggacaagatggtcgccccgga ccccccggccccgttggagctagaggtcagcccggagttatgggattccccggacccaag ggagtcgctggtgagggtggaaagtctggcgagagaggagtgatgggacctactggcgct cttggtgccccaggaaaggacggagatcttggtgctccaggaccatctggacctgctgga ccttctggagagagaggagagcagggagctggtggagctggtggattccagggtcttccc ggaccccagggtgccattggtgagagtggaaagcccggagagcagggtctgtccggtgag gctggagtatctggacccgctggaaacagaggtgacagaggtttccccggagagcgtgga tctcctggtgtaaatggacccgctggagcccgtggatcccccggatctggtggaaacgat ggcgctaagggagatgctggagccccaggtaactccggagctcagggtcctccaggactt cagggtatgcccggtgagcgcggtgccgctggccttccaggactgaaaggaggcagagga gaccaaggaggcaagggtgctgatggtgctggtggaaaggatggcccccgtggcttgact ggacctattggacttcctggacccggtggatcctccggagataagggagacgctggagca cccggacccggcggacctgctggatctcgtggaggccctggtgagcgtggagagtctgga ccccccggacccgctggattcgctggacctcctggtgctgacggtcagcctggtggtaag ggagagtctggagataacggtggaaagggagatgctggtccccccggtgtttctggaccc actggtggcgctggacctcagggtcccaatggaaactctggccccaagggagcccgcgga accgctggaccccctggtgctactggattccccggtgctgcaggtagagtcggagccccc ggcccctctggaaactctggccctgctggagcccccggagccggtggcaaggaaggaccc aaaggaaaccgtggagagaccggaattgcaggtcgcgctggtgagatgggagctgctgga cccccaggatctgccggagagaagggtggtcccggtggtgaaggatcctctggagctcct ggtacttctggacctcaaggtatcgctggatctcgtggtattgttggtctgcccggacag agaggagagagaggtttccctggcatgaacggaccctctggagagcttggaaagcctgga ccttcaggacccggtggagagcgtggaccctcaggatccatgggccctgctggtctggct ggagcctctggtgagaccggacgtgagggaagccccggtaatgagggatcttctggccgt gatggacctgctggacccaagggagaacgtggagagggaggaccatccggagcctccggt gcccctggaccatctggtgcccccggacccgttggacccgctggaaagaatggagaccgt ggagagtctggatctgctggccctgctggtgcttctggctctgctggacctcgtggccct gctggacccgctggactccgtggagacaagggagagtccggagaggctggagagagaggc ctgaagggacaccgtggattcaccggcatgcagggacccatcggaccctctggatccaat ggagaggctggacccgctggtacttctggacccgctggacctagaggcccatctggatct gctggatcttctggtaaggatggtatgagtggtctgcccggacccaccggacctcctgga gtccgtggtcgctctggagagatgggaccttccggtcctcctggacctcccggacctgct ggagcacctggtgcccccggcggcggattcgacctcggcttcatctcccagccccaggag aaggcccccgatcccttccgtatgttccgtgctgatgacgctaacgttctccgcgatcgc gacctggaggtggacggcaccctgaagagcctgagccagcagatcgagcagctccgcagc cccgacggtagccgcaagaaccccgccagaacctgccgcgacctcaagatgtgccacccc gaatggaagagcggacagtactggatcgaccccgaccagggctgcactcaggacgccatc aaggtctactgcaacatggagaccggagagacctgcgtatcctcaactcagcctgaggtt gccaagaagaactggtacacaagcaagaacatcaaggagaagaagcacgtcttcttcgga gaggccatgaccgagggcttccagttcgagtacggaagcgagggctccatgccacaggac gtcaacatccagctgaccttcctgcgtctcatgtccactgaagcatcccagaacatcacc taccactgcaagaacagcgtcgcctacatggacgcctccgccggaaacctcaagaaggcc atgctcctccagggctccaacgagatcgagatcagagccgagggcaacagccgcttcacc tacagcgtcctggaagacggatgcacgtcacacaccggtacatggggcaagacagtcatc gactacaagacaacgaaaacatctcgccttcccatcattgatatcgctcctatggacgtt ggtgctccagaccaagagttcggcattgaagttggacccgtctgtttcttgtaa

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