Notothenia coriiceps (black rockcod): 104944171
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Entry
104944171 CDS
T04920
Symbol
pcdh7
Name
(RefSeq) protocadherin-7 isoform X1
KO
K16498
protocadherin delta 1
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
104944171 (pcdh7)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ncc01009
]
104944171 (pcdh7)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ncc04515
]
104944171 (pcdh7)
Protein phosphatases and associated proteins [BR:
ncc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104944171 (pcdh7)
Cell adhesion molecules [BR:
ncc04515
]
Cadherins
Protocadherins
104944171 (pcdh7)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Mid2
TMEM154
Adeno_E3_CR2
KIAA1549
DUF1180
Motif
Other DBs
NCBI-GeneID:
104944171
NCBI-ProteinID:
XP_010767977
UniProt:
A0A6I9MU84
LinkDB
All DBs
Position
Unknown
AA seq
1259 aa
AA seq
DB search
MRTTGAVDYLYYCMLILQFVHQPAAKQVLRYRLAEEGPADVRVGNVAGDLGIVAGSGEVT
FTLESGSDFFKIDNITGELTTNERRIDRDKLQQCQMIFDENECFIDFEVSVIGPAQSWVD
LFEGKVIILDINDNTPSFPSPVLTLSVEENRPIGTLYLLPTATDRDFGRNGIERYELIQD
NGENSRRLGSSGDSFNGKRRFEETASRSSVFELQVADTSDGEKQPQLIIKGALDREQRDS
YELTLRVRDGGDPPRSSQAILRVMITDVNDNSPRFEKSVYEADLPENSSPGAPILQLKAA
DADVGVNGQIEYVFGAATESVRRLLRLDESTGWLSVLHRIDREEVSQLRFTVMARDRGQP
PKMDKATVVLNIKDENDNVPAIEIRKIGRIFLKDGIANVAEDVVVDTPIALVQVSDRDQG
ENGIVTCTVVGDVPFQLKPASEMEGDQNKKKYFLHTSATLDYEATQEYNVVIVAVDSGSP
SLASNNSVIVKVGDTNDNPPIFSQNVVEVSFLENNAPGERVTTVKAIDADSGKNAEIAYS
LDSSVNGIFSIDADSGDIRVNTILDREQTEHYEFKVIAKDKGIHTLQGSATVVVLVADKN
DNEPKFMQDVFTFYVKENLEPNSPVGMVTVIDADKGQNAEMRLFIEEEEENFSIENDTGT
IFSTLSFDREQKTTYTFRVKAVDGGDPPRSATATVSLSIMDENDNAPTVTFPLNSSYTLL
PPSSNIRTVVRTVIATDTDTAVNADLSYSIIGGNPFRLFEIDGGTGVISLVGKLEQKHYG
LHRLVVQVNDKGQPSQRTTTLVHVFVNETLSNSTVVEAQVARSLSTSLNTNIAGDPNYDL
SKQRLSIVIGVVSGIMTVILIILVVVMARYCRPKNKNGYEAGKKDHEDFFTPQQHDKAKK
PKKDKKKLKSKQPLYSSIVTVEASKPNGQRYDGVNEKLSDSPGMGRYRSVNGGPGSPDLA
RHYKSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGTGDNISLGSDHCSEYSSQTIN
KYNKQPFRRVTFSVVSQPQDPHQQGSLQSCYDSGLDESETPSSKSSSGPRLGALPLPEDS
YERTTPDGSVGEAEHLENDSRPLPDVAMTGKCTRECDEYGHSDSCWMPVRTSPERRPSKS
TTTPQQPKLSTFMSGNGSSSSSSSSSEQPDSQETLAMAAMANGDPTAAHMMGDRNRNLLN
KKMASSSSSSYEVFGSPSYGSPENGEEVLRHPTEEIPLAPTGEYKPTSCGTLTRREVYL
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atgaggactactggtgcagtggactatttgtactattgcatgctcatcctgcagtttgtg
catcagccggctgccaagcaagtgctccggtaccgtttggctgaggaaggacctgccgat
gtcagagtagggaacgtggccggcgacctgggcattgttgccgggtccggtgaggtgaca
tttacgctagaatcaggctccgattttttcaaaatagacaacattacaggtgagctcacc
accaacgagaggcgcatagaccgtgacaaattacagcagtgccaaatgatatttgacgaa
aatgagtgttttatagatttcgaagtgtcagtgattgggccagcccagagctgggtcgac
ctctttgagggaaaagtcatcatattagatataaatgataacaccccctctttcccttcc
cctgtcctgacactgtctgtggaggaaaacagacccattggaaccctttatctgctgccc
acagctacagacagagattttgggagaaatggaatagagcgatatgagcttatacaggac
aatggggaaaactcaaggcgcttgggctcttctggggattcattcaacgggaagaggaga
tttgaagaaaccgcaagcaggagcagcgtctttgaactgcaagttgctgatactagtgat
ggagagaagcagcctcaacttatcattaaaggggcccttgatagggaacagagagactcc
tatgagcttacgctgcgagttagggatggaggagacccccctcgctcctcccaagccatt
cttagggtgatgatcactgatgtgaatgacaacagccctcgctttgagaagagtgtgtat
gaagctgacttaccagaaaacagctcccctggcgcccccatactgcagctcaaagcggct
gatgcagacgtgggggttaatggtcaaatagagtatgtgtttggggcagccacagagtca
gtgaggaggctgctgaggttggatgagagcacagggtggttgagtgtgttgcaccgcatt
gaccgtgaagaagtgagccaactgaggttcacagtaatggcccgtgaccgaggtcagcca
ccgaaaatggacaaggccactgtggtgttgaacatcaaggatgagaatgacaacgttcct
gctatagagataaggaaaattggacgcatattcttaaaagatggcattgctaacgtggcg
gaggatgtggtggtggacacacccattgccttagttcaggtgtcagaccgcgaccaggga
gaaaatggcattgtcacctgtacagtggtgggggatgttccctttcagctcaaaccagcc
agcgagatggagggagatcagaataaaaagaaatatttcctccacacttctgcaacgctg
gactatgaggccacacaggaatacaatgtggtcatagtggctgtggactctggaagcccc
agtcttgcaagtaataactctgttatcgtcaaagttggcgacactaacgacaaccctcct
atcttcagccagaacgtagtagaggtgtcctttctggaaaacaatgcccccggagagagg
gtgacaacagtgaaagccatcgacgcagatagtgggaagaatgctgaaatagcctactcc
ctagactcatctgtaaatgggattttctccatcgatgcagacagtggagacatccgagta
aacaccattctggatagagagcaaacagagcactacgaattcaaagtgatagccaaagat
aagggcatacacactctacagggctctgcaacagtggtcgtccttgtggcagacaagaat
gacaatgagccaaagttcatgcaggatgtgttcaccttctacgtcaaagaaaaccttgag
ccaaacagcccagttggcatggtcacagtcatcgacgcagataaaggccaaaatgcagag
atgcgtcttttcattgaggaagaggaggaaaacttttctattgaaaatgacactgggact
attttctctaccttgtcctttgacagagagcagaaaacgacatacacattccgagtaaaa
gctgtagatggtggagaccctcccagatctgccaccgccacagtttcactctctatcatg
gatgaaaatgacaatgcaccaacagtgactttcccattaaacagctcctacaccctgctt
cctccctccagtaacatcagaacagtagtcagaacagtcatagccactgacacagacacc
gccgttaacgcagacttgagctacagcatcattgggggaaaccccttcaggctgtttgag
attgacgggggcactggtgtcatttcactggtggggaagttggagcagaagcactatggc
ctccacagacttgttgtccaggtgaacgacaagggccagccttcacagagaaccaccacg
ctggtccatgtgtttgtcaacgagactctttctaattccacagttgtggaggcccaggtg
gctaggagcctaagcacatctctgaacaccaacattgccggtgaccccaactatgatctg
agcaaacagcggctgagcattgtaatcggagtagtttcgggcatcatgacggtaatcctc
attattctagtcgtcgtcatggcccgttactgccgccctaagaataagaatggctacgag
gctggaaaaaaggatcacgaagacttctttacgccacagcagcacgataaggctaagaag
cccaagaaagataagaaaaaactgaagtccaaacagccactttacagcagtattgtcacc
gtagaggcctccaaacccaacgggcagcgctacgatggcgtcaacgagaagctgtcggac
agccctggcatgggccgctaccgatcggtcaacggagggccggggagcccagatctggcc
cggcactacaagtcaagttcacccctccctactgtccagcttcacccgcagtcaccgaca
gctggaaaaaagcaccaggcagttcaggacctgccccctgccaacacctttgttggcact
ggagataacatttcccttggatctgaccactgctctgaatacagcagtcaaactatcaac
aagtacaacaaacagccgtttcgccgtgtgaccttctcggtggtgagccagccccaggac
cctcaccagcagggatcgctgcagagctgctacgacagcggcctggacgagtcagagacg
cccagcagcaagagttcgtcgggcccccggctgggcgcccttcccctgcccgaggacagc
tacgagaggacaacgccggatggcagtgtcggtgaggcagagcacttggaaaatgactcc
cggcctttgcctgacgtagccatgactggcaagtgcacccgggaatgtgacgagtacggc
cactccgactcctgctggatgcctgtgcgcacgtcgccagagcgacggccatccaagtca
accactacccctcaacaaccaaagctttccactttcatgagcggcaacggcagcagcagc
agcagcagcagcagctctgagcagcccgacagccaagagaccctcgccatggccgccatg
gctaatggagaccccaccgctgctcacatgatgggcgaccgcaatcgtaacctgctcaac
aagaagatggcttcctcctcctcctcctcctacgaggtcttcggctcgccttcctacggc
tcgccagaaaatggggaggaagtgctgcgccaccccactgaggagatccctctggcacct
accggggagtacaagcccacttcctgtggcactctgacgagacgggaggtgtacctgtga
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integrated database retrieval system
