Notothenia coriiceps (black rockcod): 104944396
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Entry
104944396 CDS
T04920
Symbol
mid1
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1 isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104944396 (mid1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncc04121
]
104944396 (mid1)
Enzymes [BR:
ncc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104944396 (mid1)
Ubiquitin system [BR:
ncc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
104944396 (mid1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
PRY
zf-C3HC4
FN3_DSCAM-DSCAML_C
TRIM_CC
zf-C3HC4_3
zf-RING_2
Pur_ac_phosph_N
zf-RING_5
zf-C3HC4_2
NDNF
Motif
Other DBs
NCBI-GeneID:
104944396
NCBI-ProteinID:
XP_010768224
UniProt:
A0A6I9MPN6
LinkDB
All DBs
Position
Unknown
AA seq
689 aa
AA seq
DB search
MDTLESELTCPICLELFEDPLLLPCAHSLCFGCAHRILISHCATNESVLSIGAFQCPTCR
YVISLSPERGLEGLKRNVTLQNIIDRVQRASSSAGIPLPLALPAPHSGPNSPGDEGRDRL
ALVPFSAAMSSPGTPPEPIQCQFCEQDPPQDAVKTCVTCEVSYCEECLRATHPNKKPFTG
HRLIEPMPDSHLRGLQCLEHEEEKVNMYCVTDDQLICSLCKLVGRHRDHQVAALSDRYEK
LKQALDSNLSNLIKRNNELESIMGKLIQTCQHVEVNASRQEGKLLEECDVLIEIIQQRRQ
IIGSKIKEGKTQRIRKLAQQISNCKQCIERSSALITQADQTLKETDHARFLQTAKCINER
VSMASASTQVLIPEIHLTDNFDTVALDFTREKKLLESLDYLTAPNAPCIREELCTASYDT
ISVHWTSDDEFTVVSYELQYAIFTGQSNIASLCNSLESWMIVPNIKQNHYTVHGLQSGTK
YIFVVKAINQAGSRSSEPGTLKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETTSKKGHN
QERFTSQNSYGVVGNVYIDSGRHYWEALIGGSTWYAVGIAYKSAPKHEWIGKNPASWVLC
RCNNSWVVRHNSKELAIEPSPHLRRVGILLDYDVGTVSFYDAVGSQHLHTFHVSFVQPVC
PVFNVWNKCLTILSGLPIPDHLEGLELDN
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggacacactggagtcagagctgacttgcccaatctgcctggagctctttgaagaccca
ctgctgctgccctgcgctcacagcctgtgtttcggctgcgcccatcgcatcctcatctct
cactgtgccaccaacgaatcagttctgagcatcggcgccttccagtgccccacctgtaga
tatgtcatctccttgagtcctgaacgtggactagaaggactaaagagaaacgtgacgttg
cagaacattattgatagagtacagagggcctcatcctcggctgggatccctcttccgctg
gcgttgcctgcgccccacagcgggcccaactctcccggagacgaagggagagaccggtta
gcgttggtcccgttcagtgccgccatgtccagcccgggcacgcctcccgagcccatccag
tgccagttctgtgagcaggacccgccacaggatgccgtgaaaacgtgtgtgacgtgcgag
gtgtcgtactgcgaggagtgcctcagagcaacgcacccgaacaagaagccgttcaccggc
caccggctcatcgagcccatgccagactcccacctcagggggctgcagtgcctggagcac
gaggaggagaaggtgaacatgtactgtgtcacggacgatcagctgatatgctcgctgtgc
aaactggtggggaggcaccgagaccaccaggtggcagcgctgagcgaccgatatgaaaaa
ctcaagcaagccctggactccaacctgagcaatttgatcaagaggaacaatgagctggag
tctatcatggggaaactgatccagacttgtcaacatgtagaggtgaacgcgtcccgtcag
gagggcaagctcctggaggagtgtgatgtcctgatcgaaattatccagcagaggaggcag
atcatcgggagcaagatcaaggaggggaagacacaaaggattcggaagctcgcccaacag
atctccaactgcaagcagtgcatcgagaggtcctcggccctcatcacgcaggccgatcag
acgctgaaagaaactgaccacgctcgcttcctgcagaccgccaagtgcatcaacgagagg
gtttccatggcatcagcttcaactcaagtgctgatccctgagatacacctaacggacaac
ttcgacacggtcgccctggacttcaccagagagaagaagctgctggaaagtctggattac
cttactgctccgaatgctccgtgcatacgggaagagttgtgcacggcgtcctacgacacc
atctctgtccactggacgtctgatgatgagttcacggtggtatcctatgagctgcagtat
gctatctttactggacagtctaacattgccagtctgtgtaactctttggagagctggatg
attgttcccaacatcaagcagaaccactacacggtgcacggtctgcagagcggcaccaag
tatatcttcgttgtcaaggctattaaccaagcaggaagcaggagcagcgagccggggact
ctgaagaccaacagccagcccttcaagctggaccccaaatcggcccacaagaagctgaag
gtgtcccacgacaacctgacggtggagcgcgacgaaaccacgtccaagaaaggccacaac
caggagcgcttcaccagccagaacagctacggcgtggtggggaacgtctacatcgacagc
ggccgccactactgggaggctttgatcggagggagcacatggtacgctgtgggtattgcc
tacaaatcagctccgaagcacgagtggatcggcaagaacccggcctcctgggtgctctgc
cgctgcaacaactcctgggtggttcgccacaacagcaaggagctggccatcgagccctcg
ccccacctgcggcgcgtcgggatcctgttggactacgacgtcggcaccgtgagcttctac
gacgccgtgggctcccagcacctgcacaccttccacgtgtccttcgtgcagcccgtgtgc
cccgtgttcaacgtgtggaataagtgtctgacgattctgtccggcctacccatcccggac
cacctcgaggggctggagctcgacaactga
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integrated database retrieval system
