Notothenia coriiceps (black rockcod): 104944638
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Entry
104944638 CDS
T04920
Symbol
nrde2
Name
(RefSeq) protein NRDE2 homolog
KO
K26109
nuclear exosome regulator NRDE2
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncc03019
]
104944638 (nrde2)
Messenger RNA biogenesis [BR:
ncc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104944638 (nrde2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NRDE-2
TPR_14
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
SICA_beta
Motif
Other DBs
NCBI-GeneID:
104944638
NCBI-ProteinID:
XP_010768514
UniProt:
A0A6I9MQK9
LinkDB
All DBs
Position
Unknown
AA seq
1190 aa
AA seq
DB search
MALFPAFAEVEPNKVEDSSKELDWLKNKSFQTEDALSLHSRFFEKTSERLNEKESSVGRY
VSSEEEEEEGHVPPKKKKKKSEKKKKKHKKYKKKSERHSDSSGNETEIIFPSDLKREQEA
ESPQAAPLASCFSWLDDLKSPTEQPFCVDRKADQANWTYKSLYRGDITRYRRKGLSSLGL
DPRKQGVSWEVPESNKKQKGGDKKKAADRYFSTVSRQLLRSEPLVPTLPTIPKDGNAIST
SSFLPLGGDEESKGGKTGDRVQTSSVNPLGVYDASTALWLQGKGQQEQEVQTGQNAALAG
RTEEFNRRLREQPGDTQLWIQFIRYQDELSAAAFGGEAEQQGSEAVEHRKSSYRALLEKK
LSIAERAVSTNHSCIALQLERLRICQELWEPSALAKEWKKLVFLHPNSAPLWREYLLFTQ
SYFSIFSVSKVNSAYGKCLSTLSAVHDGSMVSHPALPGLEEDMLDIFTQQCHFLRQSGHS
EKAISLLQAMIDFTFYKPDSVRGLSTKQQVEFFEPFWDSGEERVGELGARGWKAWMLQQE
KGGWLQPNAEEEEEEDEDEEEVKDRSQPRWTVWLEVETCREAAHWLPWRPDKAKGQSEED
CEDPDRQVLFDDIGPSLIRLSSPELQLRLLLRFLSFLGLPVDPVLSAAPCQPGLLLENLS
LLTQGNELRRPLTSYDLPDPGVNSIGHMTILQGTRKWVGLGKLGEMFLTNVLKMVQPVLP
VQQRAALSLSWMQYEKLKVLRCLHGGNKKRLRFQGKSSKRVAKQLLKEPDNRSSLVLWRG
YAHLEWMLGNIDEARKVFSTATAMGGGKGLQSPALCELCLLWAQLEMEDGPTVRGGGLVD
LTASPAVCVLTRLAEGSPSDQAISPVSILKARKSYEQVLTAGLSALEQNYQTNKKAGKED
LLGEKPRLKGLMGCHALFQYLTTGIQAANAVYNQARDRIEELQQKLTQDKQLNSSEDVAS
TDANQSDSSLSCRQYVSRLVSECEALAVQQAALLRYHNSISVFPLTTLRQTLTSALSTWA
GSALLWGLYVQVENRYHSAGRARRFFHSVTRGNSSVVPRLFAIVAEQQRKQLVDAAQRSC
CHDAALPILPENGLSNRIRGLFESAIATEMGSHCPLLWRMYMHFLVSEGKMDKATGIFYK
ALQNIPWAKGLYMDAVQLFPEHLQEFVDLMTEKELRVRLPLEELDILLED
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggctctgtttccagcttttgcagaagtagagccaaacaaagttgaagattcgtccaag
gaattagactggctgaaaaataagagtttccagactgaagatgccctctctcttcacagt
cgtttttttgagaagacgagtgagaggctgaacgaaaaggaatcaagtgtggggagatat
gtgagctctgaggaggaggaggaggagggtcatgtgccacccaaaaagaagaaaaagaag
agtgaaaagaagaagaaaaaacacaaaaaatacaaaaagaagagcgagagacattcggac
agcagcggcaatgagactgaaataattttccccagtgacctcaaaagggaacaagaggca
gagagtccccaggctgctccgttagcaagttgtttctcctggctggatgacctcaagtcg
cccacagagcagccgttctgtgtggaccgtaaagcagaccaagccaactggacctacaag
tcactgtacagaggagacataaccaggtataggaggaagggcctctcgtccttgggtctg
gacccccgcaaacagggagttagctgggaggtgccagagtcaaataagaaacagaaaggc
ggggacaagaagaaagcagcagacagatacttctctacagtcagtcgccagctgctgagg
tccgagccccttgttcctacattacccacaatacctaaggacggcaatgccatcagcacc
tcctcctttctcccgctgggcggcgatgaggagagcaaaggaggaaagacaggggacaga
gtgcagacatcctcagtgaatcctctgggtgtgtatgacgcctccacggccctctggctg
caggggaaggggcagcaggagcaggaggtgcagaccgggcagaatgcagcgctggccgga
aggaccgaagagttcaacaggcggctcagagagcagccaggagacacgcagctctggata
cagttcatacgataccaggatgagctgagtgcagcagcgtttggaggagaggcggagcag
cagggcagtgaagcggtggaacatcggaagtcctcctacagagcgctgctggagaaaaag
ctgagcatcgcagagcgcgctgtatcgaccaaccacagctgcatcgctctgcagctggag
aggctccggatctgccaagagctctgggagccctctgctctggccaaagaatggaagaag
ctggtgtttctccatccaaacagtgcccccttgtggagggagtatctgctgttcacccag
agctacttcagcatcttctccgtgtcgaaggtgaactctgcttacgggaagtgtcttagc
acgctcagtgcggtgcatgacggcagcatggtgtcccacccggccctgccagggctcgag
gaggatatgttggatatcttcacccagcagtgtcatttcctgcgtcagtctggtcactca
gagaaggccatttctctgttacaggccatgattgatttcaccttctacaaacctgacagt
gtacgaggactgtccaccaagcagcaggtggagttctttgagccattctgggacagcggg
gaggagagagttggagagttgggggcccgaggttggaaggcctggatgctccaacaggag
aagggggggtggctgcagcccaatgcggaggaagaagaggaggaggatgaggatgaggag
gaggtgaaggatcgcagccagcccagatggacagtctggttggaggtggagacgtgtcgg
gaagcagctcattggctgccctggaggccggacaaagccaagggtcaatcagaggaggac
tgtgaggaccctgacagacaggtgttgtttgatgacatcggtccatcactcattcgcctg
tcttcaccagagctccagctccgccttctcctccgtttcctgtcgtttctcgggctacct
gtagaccctgtgctctctgctgccccctgtcagccgggcctgctgctggagaacctctct
ctgctcactcagggtaacgagctcaggcgtcctctgacctcgtacgaccttcctgacccc
ggggtcaactctattggtcacatgaccattcttcagggtacaaggaagtgggtggggctt
gggaagctgggcgagatgtttctcactaatgtgttgaagatggtccaacctgtcctccct
gtccagcagcgagccgccctgtcactcagctggatgcagtatgagaaactcaaggtgttg
cggtgcctgcatggcggcaacaagaagcgtctccgatttcagggcaagagcagcaagcga
gtcgccaagcaactgctcaaagaacctgacaaccgctcgtcactggtgctgtggcgtggc
tacgctcatctggagtggatgctgggcaacatcgatgaggcccgcaaagtcttctccacg
gccacggccatggggggaggcaaagggctgcagagccccgccctctgtgagctgtgtctg
ctgtgggcgcagctggaaatggaggacgggccaacagtgcgagggggaggacttgtagac
ctcactgcgtccccagctgtgtgtgtgctaaccaggctagcagagggaagcccctccgac
caggccatctctccggtctccatcctgaaagccaggaaatcatatgaacaggtgctgaca
gccggcttgtcagcactcgaacaaaactaccagaccaacaaaaaagcaggtaaggaggac
ctgcttggagagaagcctaggctgaaaggcctgatgggatgccacgctctgttccagtac
ctcacaacgggcatccaagctgctaatgctgtctacaatcaggctagagacaggatagag
gagctgcagcagaagctgacccaggacaagcagcttaacagctctgaggatgtcgctagc
accgacgctaaccagtctgattccagcctctcctgcaggcagtatgttagccggctagtt
tctgagtgtgaggctctggcagtgcaacaggcagcgttgcttaggtaccacaacagcatc
agtgtgtttcccctgacaacactgaggcagacactgacctccgccctctccacgtgggcc
ggcagcgcccttctctggggtttatatgtacaggtggagaaccgttaccatagtgctggc
cgggcgcgacgcttcttccactctgtaaccaggggcaacagcagtgtagtgccacgcctc
tttgccattgttgcggaacaacagaggaagcagctggttgacgctgctcagaggtcttgt
tgccatgatgctgccttaccaatcctgccagagaatgggctcagcaaccgtatccgtgga
ctgtttgaaagtgccatagcaacagagatggggtctcactgtcctttactttggaggatg
tacatgcacttcctggtttcagaagggaagatggacaaagccactgggatcttctacaag
gccttacagaatattccctgggctaagggcttgtacatggacgcggtgcagctgttcccc
gagcatctgcaggagtttgtagatctgatgacagagaaagagctccgagtcagactacct
ttggaagaactggatatactgctggaggactga
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