Notothenia coriiceps (black rockcod): 104944846
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Entry
104944846 CDS
T04920
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03013
Nucleocytoplasmic transport
ncc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104944846 (upf1)
03015 mRNA surveillance pathway
104944846 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncc03019
]
104944846 (upf1)
Enzymes [BR:
ncc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104944846 (upf1)
5.6.2.5 RNA 5'-3' helicase
104944846 (upf1)
Messenger RNA biogenesis [BR:
ncc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104944846 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104944846 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
AAA_22
UvrD_C_2
AAA_25
Motif
Other DBs
NCBI-GeneID:
104944846
NCBI-ProteinID:
XP_010768725
UniProt:
A0A6I9N3W9
LinkDB
All DBs
Position
Unknown
AA seq
1108 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEGELLGADTLSSEYDFTDFTLPSQTQGQTQSQLENQVNGLD
GLLQNGDDPVLKVGQLLAELNFEEDEEDAYYTKDLPIHACSYCGIHDPACVVYCNTSKKW
FCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADS
VVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQIN
KLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKES
QTQDSITVRWDLGLNKKRIAYFTIPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVIKV
PDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKMFAVDETSVSGYIYH
KLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA
TVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHN
QTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAGDP
RLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQS
LFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPD
KPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPNQIGIITPYEGQRSYL
VQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVAL
TRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTI
NPGGRFMSTAMYDAREALIPGSAYDRSNGRSSNMYFQTHDQIGMIGTGPNPMNSLNIPIP
FNLVMPPIPPPGYMGQVNGPSAGRGGGMKGKAGGGGGNRGGRQRNRGNMGNHSGGNGGTD
RHGGHMSGSQASQDLGSQSFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDEFKS
QIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcgcagactctaacgttcctggacaccgaggag
ggcgagctgctgggagcggacaccctgagctccgagtacgacttcaccgacttcaccctg
ccgagccagacccaaggccaaacccagagtcagctggaaaaccaggttaatggccttgat
ggcctgctacagaatggagacgacccagtgttaaaagtcggtcagctgctggcagagttg
aactttgaggaggatgaggaggacgcgtactacaccaaagatcttccaatacatgcctgc
agttactgtggtattcatgatccagcctgtgtggtctactgcaacaccagcaagaagtgg
ttctgcaacggccggggaaacacatccggcagccacattgtaaaccacctggtgagagca
aagtccaaggaggtgaccctgcataaagatggccctctgggggaaactgtgctggagtgc
tacaactgtggctgtcgcaatgtcttcctgttgggcttcatccctgccaaggccgactct
gtggtggtgctattgtgcaggcagccatgtgccagccagagcagcctgaaggacatcaac
tgggacagctctcagtggcagcctctcatccaggaccgctgcttcctgtcctggctggtg
aagatcccctcggagcaggagcagctcagggcccgtcagatcaccgcccagcagatcaac
aagctggaggagctctggaaggaaaatcccactgcgaccttggaggacctggagaagccc
ggcgtggacgaggagccccaacatgtgctgctccgatatgaggacgcctaccagtaccag
aacatctttggtcctcttgtgaagctggaggccgactatgataagaaactgaaagagtct
cagactcaagacagcataacagtaagatgggacttgggcttgaataaaaagaggattgct
tatttcactattcccaagacggactcggatatgcgactgatgcagggagatgaaatctgc
ctgaggtacaaaggggatctggcccctccgtggaaaggcatcggacatgtcatcaaagtc
cccgataactatggtgatgagattgccatagagctcaggagcagtgccggcgctccagtg
gagatccctcacaactttcaggtcgactttgtgtggaagtccacttcctttgacaggatg
cagagtgccctgaagatgtttgctgtggacgagacttcagtgtctggttacatctaccac
aagctgctgggacacgaggtagaggacgtggtgatcaagtgccagctgcccaaacgcttc
actgctcaaggcctgcccgacctcaaccactcacaggtgtacgcagtgaagacggtgctg
cagcgtcctctcagtctgatccagggtcctcctggcacggggaagacggtcacctctgcc
actgtcgtctaccacctggccagacagggcaacgggccagtgctggtgtgtgctcccagc
aacattgcggtcgaccagctgacggaaaagatccaccagacgggcctgaaggtggtgagg
ctgtgtgccaagagcagggaagccattgactcgcctgtgtccttcctggctctgcacaac
cagacccgcaacatggacagcatgccagaacttcagaagctgcagcagctgaaggacgag
actggagagctgtcatcctcagacgagaagcgctacagagctctgagacgcaccgccgag
agggaactgctcatgaatgccgatgtgatctgctgcacctgtgttggggcgggggatcct
cgtctggccaaaatgcagttccgctcgatcctgatcgatgagagcacccaggccaccgaa
ccagagtgcatggtgcccgtcgtcctgggcgccaaacagttgattctggtgggtgatcac
tgccagctgggcccggtggtgatgtgtaagaaggcggctaaagccggtctgtcccagtct
ctgtttgagcgtctggtggttttggggatccggccaatccgcctgcaggtccagtaccgc
atgcacccggccctcagcgcctttccatccaacatcttctacgagggctctctgcagaac
ggagtcactgcggcggaccgagtgaagaaaggctttgacttccagtggccgcagcccgac
aagcccatgttcttctatgtgacccaaggccaggaggaaatagccagctctggaacatcc
tatctcaacaggactgaggcagcgaatgtggagaaaataaccaccaggttactgaaggct
ggagccaaacccaatcagatcggcatcattacgccctacgagggtcagaggtcctacctg
gttcagtacatgcagttcagcggctccctccataccaaactctaccaggaggtggagata
gccagtgtggatgcctttcaaggcagagagaaggacttcatcatcctctcctgtgtgagg
gccaatgagcaccagggcatcggcttcctcaatgatccccgacgtctcaacgtggcactc
actagggccaggtatggtgtgataattgtgggaaacccaaaggccctgtcgaagcagcct
ctgtggaaccacctgttgaattactacaaggagcagaaggtcctggtcgaggggcccctg
aacaacctgagggagagcctcatgcaattcagcaagccccgcaagcttgtcaacaccatc
aaccctgggggacgattcatgagcacagccatgtatgatgccagggaggctctcattcct
ggatctgcttatgaccgcagcaacggacgttcatccaatatgtatttccagacccacgac
caaattggtatgattggcaccggccccaatcccatgaattccctgaacatccccatcccc
ttcaaccttgtgatgccccccatacctccacctgggtacatggggcaggtcaatgggccc
tcagcaggtcgtggtggtggaatgaaaggcaaggcaggcggtggaggcgggaatcgaggt
ggccgtcaaagaaaccgcggcaacatggggaaccacagcggagggaatggaggaacagac
cggcatggaggccacatgagcggcagccaggccagccaggacctgggctcccagtcgttc
tcccagggcccgctgacgcagggctacatcaacatgagccagccctctcagatgagccag
cccgggctctcacagcctgaactctctcaggacagttacctaggagacgagttcaaatcc
cagattgatgtggcgttgtcccaggactccacctaccagggggagcgggcctaccaacac
ggtgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
