Notothenia coriiceps (black rockcod): 104945035
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Entry
104945035 CDS
T04920
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03030
DNA replication
ncc03410
Base excision repair
ncc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104945035 (pole)
03410 Base excision repair
104945035 (pole)
03420 Nucleotide excision repair
104945035 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncc03032
]
104945035 (pole)
03400 DNA repair and recombination proteins [BR:
ncc03400
]
104945035 (pole)
Enzymes [BR:
ncc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
104945035 (pole)
DNA replication proteins [BR:
ncc03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
104945035 (pole)
DNA repair and recombination proteins [BR:
ncc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
104945035 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
RVT_1
DNA_pol_B_exo2
zf-RRPl_C4
Motif
Other DBs
NCBI-GeneID:
104945035
NCBI-ProteinID:
XP_010768965
UniProt:
A0A6I9N4I7
LinkDB
All DBs
Position
Unknown
AA seq
2635 aa
AA seq
DB search
MVFQNNGRYKNERGQGRGEQDNQDDGSSALKRLERSQFTDEMDARFGFDRIKEPGEKTGW
LINMHPTEILDDDKRMISAVDYYFIQEDGSRFKVALPFKPYFYIATKKNCEREVISYLTR
KFQGKVTKLEVIPKEDLDLPNHLVGLKRSYIKLSFSTVDELMKIKREISPAVRKNREKEQ
SNDSYTSMLSSALSGGNVNTAEEDGPSKRISDQLDNIVDMREYDVPYHMRLSIDLKIHVA
HWYNVRYRGSAYHPEIIRRDDLVERPDPVVLAYDIETTKLPLKFPDAESDQIMMISYMID
GQGYLITNREIVSDDIEDFEFTPKPEYEGPFTVFNEEDEAALIRRFFDHVQETKPNIFVT
YNGDFFDCASTWLSPTIMPSCFTVPIALPRQLVLRTITYRNLKSPLAATGAAPTKNLAST
VHLEAYREHVRSYKEALSKAKAHCCSSLIGNQQHHPHMLFSTINRLLHPIDPPNPADAPE
LCTRFLDFFEDKVNSIHQELQASAPSHPYATPPPVTVRSTQHLPQCCLSSFAPVDVTQVT
KLVSKANATTCSLDPMPSALVKTCVPILCSTIVKMINSSLESGKVPAVLKIAAVTPIIKK
PGSDPEDPSNFRPISNLPFLSKIMEIAVAAQLHHHMSDHELYESFQSGFRSNHSTETALI
KITNDLLIAADSGLVSILILLDSLCRIRHSLPHYPTQPPIRLPWPLWYSPLLVPFLPLQQ
FVTIGKSSSPPAPVNQGVPQGSVLGPLLFNIYMLPLGEIIRQHGLNFSTAPMPTTPNSTS
VPIHHPSYPHCHLSTASATSKPGCQKIYLNSTITKQLMVVAPKTLLRKVGDLLLTIDGGS
IHPSPEVRRLGVTLDSSLTFNSHIRSTVKTAFFHLRNISRLQPSLPEPVAETLIHTFISS
RLDYCNGVLFGVTSKALDRLQYVQNSAARLLTRTKPWQHITPTLIHLHWLPVKSPPPYIS
DLLQPYTPSRHLRSSDKGLLSIQRSKLKTFVVSKIEIGGFANACSLVPRLRHRQTPWTRR
DMCRMATEQPQTLATYSVSDAVATYYLYMKYVHPFIFALCTIIPMEPDEVLRKGSGTLCE
ALLMVQAFHANIVFPNKQEQVFNKMTGDGHVMDSETYVGGHVEALESGVFRSDIPCRFKM
NPAAFDFLLQRVERTIRHAIEEEENIPLDQVTNFNEVCEDIKKKLISLKEVPNRIECPLI
YHLDVGAMYPNIILTNRLQPSAIVDEATCAACDFNKHGATCQRKMAWQWRGEIMPASRSE
FHRIQQQLESEKFPPYFPNGPPRAFHSLNKEEQAKHEKKRLADYCKRAYKKTHVTKLEER
TTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKLSAAQESGDAAEVKRCKNMEILYD
SLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCFTGANIITQARELVEQIGRPLELDTD
GIWCVLPNTFPENFVIKTNNEKKPKVTISYPGAMLNIMVKEGFTNDQYHELVDPATLTYQ
TRAENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNEDGSLAELKGFEIKRRGELQLI
KIFQSSVFEAFLKGTNLEEVYASVAKVADYWLDVLYSKAANMPDQELFELVSENRSMSRK
LEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYVISRKPEGAPVTERAIPLAIFQAE
PSVKKHFLRKWLKMPSIHDFDIRSILDWNYYIERLGSAIQKIITIPAALQQVKNPVPRVR
HPDWLHKKLLEKNDVFKQKKISELFTSEGKRQVAHQPLEAGQTADIEDFGRPPRPLQPAI
LISTKRKRASQAEESQVESQDVELTQSWREILGAPPAVGNSREEILVWLRYHKKKWELQL
RQRKERKKRRRLLDGEAQPVGGGVIRDQGPTGGLGSFLRKTARSILDMPWQIVQIAETSH
PGLYKLWAVIGNDLHCMKLNIPRVFYVNQKVPKQEEGATYKKVPAHITFATCHKNTMDTK
YLRKLSPALQSATRYYHLPVGNLPQDVSIFGSDLFLARHLRKHNHLLWLSPTARPDLGGK
EADDSRLVMESDDRGSVEINAQGCYSTVCVELDLQSLAVNTILQSQHVNDMEGGASLGVS
FDVIQQASLEDMMSGNQGASALASYDETALCSNTFRILKSMVVGWVREITQYHNVYADNQ
VMHFYRWLRSPSSLLYDPALHRTLHNMMKKVFLQLVSEFKRLGSTVVYGNFNRIMLCTKK
RRIDDAISYVEYITNSIHSREIFHSLSISFSRCWEFLMWMDPSNFSGVKGKLPSSLMSGE
DGAKQKKKSRGEGDEEGSEDEEEDPVEEDDGDGETDEVEELIESNWNIMQYLPETASCQK
YFLMIVSAYIAAVYHSMKEELRRNAPGATPVKRRGGSQATQQAVGDLSALPGMIVFSQEY
VSSELTQNFFTITQKIQKKVSGTRGVNQPSEMFPVLPGSHLLLNNPALEFIKYVCQVLSL
DANIVNQVNKLKRDLLRLVDVGEFSMQAQFSDPCNSYILPEVICHQCNFCRDLDLCKDPS
VAQDGSVLPQWFCSNCQTQYDTESIEMALVEALQKKMMSYTLQDLVCTKCKGVKEANMPL
YCKCAGDFILTFSAKSLFDQITVFRNIASHYSMSYLEETIDWLLVMSPQISQSAL
NT seq
7908 nt
NT seq
+upstream
nt +downstream
nt
atggtttttcaaaacaatggtcggtacaaaaacgagcgaggacaaggtcggggagaacag
gacaatcaggacgatggatcctcagccctcaagcgtctggagcgcagccagttcaccgac
gagatggacgcccgctttggtttcgacaggattaaagagccaggggagaaaacaggctgg
ctgatcaacatgcatcctactgaaattctggatgatgacaagaggatgatcagtgctgtg
gactattatttcatacaggaggatggaagcaggtttaaggtggccctccctttcaagcca
tacttttacatcgccactaaaaagaattgcgaaagagaagttatctcatacttaacgagg
aagtttcaaggaaaggtgacgaagcttgaagtcatcccaaaagaggacctcgacctgccg
aaccatctggttggactgaagcgaagctacatcaagctgtccttcagcaccgtggacgaa
ctcatgaagatcaagcgtgagatctctccagcagtacgcaagaacagagagaaggagcag
tccaatgactcctacacctccatgttatcaagtgccttatcaggtggaaatgtgaacaca
gcagaggaagacgggccgtcaaagcgtatctcagaccagttagacaacatagtggacatg
agagagtatgatgtgccatatcatatgcggttgtccatcgaccttaagatccacgtggct
cactggtacaatgttcgctacagaggcagcgcttaccacccagagatcatacgcagagat
gatcttgtggagagaccagaccctgttgttttggcttatgacatcgagaccaccaaactc
ccactgaagttcccggatgcagagagcgatcagatcatgatgatctcctacatgattgat
ggacaggggtatttaatcacaaaccgggagattgtctctgacgacattgaagattttgag
ttcactcccaaacctgaatatgaagggcctttcactgttttcaacgaggaggacgaggcg
gctctcatccggagattctttgaccacgttcaagaaaccaaaccaaacatctttgtgacc
tacaatggagacttctttgactgtgcttcaacctggctgtctccgaccatcatgccatcc
tgcttcactgtgcctatcgccctccccagacagcttgtactgcggacaattacctacagg
aacttaaaatcacctctggccgccactggagcggctcccacaaaaaatctggcctccaca
gtccatctggaggcttacagagagcatgtcagatcatacaaggaagctctctcaaaagct
aaggcacactgctgctcctcactcatcggtaaccagcaacaccacccccatatgctcttc
tccaccataaaccgcctactccacccaattgacccccccaacccagcagacgcccccgag
ctttgcaccaggttccttgacttctttgaggacaaagtcaactccatccaccaggaactc
caggcctctgccccatcccatccatatgccacaccacctccagtcactgttcgctcaact
caacacctgcctcaatgttgtctctcctcctttgcaccagtggatgtcacacaggttacc
aaacttgtctcaaaagctaacgctacaacctgctccctcgaccccatgccctctgccctg
gtcaaaacttgcgtacccatcctctgctccaccattgttaaaatgatcaactcctccctg
gaatcaggcaaggttcccgccgttctcaagatagcagctgtcacccccatcatcaaaaaa
cctggtagcgaccccgaggaccccagcaacttccggccgatctccaaccttccttttctg
agcaagatcatggaaatagcagttgctgcccaactccaccatcatatgtccgaccatgag
ctctacgaatccttccaatcaggcttcagatccaaccacagcacagagacggcccttatt
aaaataaccaatgacctcctcatagccgccgattcaggcctcgtcagcatccttatcctc
ctagactctctctgccgcattcgacacagtctcccacactatcctactcaaccgcctatc
cgtctaccttggcctctctggtacagccctctcctggttccattcctacctctccaacag
tttgtgaccatcggaaaatccagctctcccccagcccctgtcaaccaaggtgtgccgcaa
ggttctgtgctcggcccccttctattcaacatctacatgctccccctcggtgaaatcatt
cgccaacatggtctcaacttctcaacagctcctatgccgacgacacccaactctacatca
gtaccaatccatcatcccagctacccccactgtcacttgtcaactgcctccgcgacatcc
aagcctggatgtcaaaaaatctacttaaactcaacaataacaaaacagctcatggttgtg
gccccaaaaacactgctccggaaggttggagatctgctcctcaccatcgatggcggctcc
atccacccttcccccgaggttcgcagactgggcgtcactctggactctagcctcaccttt
aactcccacatcaggtcaactgtcaaaactgcattttttcacctacgaaacatctccaga
ctccagccctctctccccgaacccgttgcagaaacattaatccataccttcatctcctct
cgtctggactactgcaatggtgttctgttcggggtcaccagcaaagccctggacaggctc
cagtacgtccagaactctgcagccaggctcctcacccgcactaagccctggcaacacatc
acccctaccctcatccacctacattggctcccggtcaagtcaccccctccatacatctct
gacctccttcagccctacaccccctctcgtcacctgcggtcctccgacaaagggctgctc
tccatccagcgctccaagctgaaaacatttgtcgttagtaagattgagattggcgggttt
gcaaatgcatgctcgttggttccgagattgcgacatcgtcagacaccctggacccggagg
gatatgtgtcgcatggctactgagcagccacagactttagccacctactctgtgtcggac
gctgtggccacgtattacctctacatgaaatacgttcaccccttcatcttcgctctgtgc
accatcatccccatggagcccgacgaggtgctgcgtaaaggctctgggacgctgtgcgag
gctctgctcatggttcaggccttccacgcaaacatcgttttccccaacaagcaggagcag
gtgttcaacaaaatgaccggcgacggccacgtcatggactctgagacctacgtgggcggc
cacgtggaggcgctggagtccggagttttccgcagtgacatcccttgccgtttcaaaatg
aacccggccgcgtttgacttccttctgcaaagagttgagagaaccattcgtcacgccatt
gaggaagaggagaacatccctttggatcaggtcaccaactttaatgaggtttgtgaggat
atcaaaaagaagctgatatccttaaaggaggtcccaaacaggattgaatgccccctcatc
taccatctggatgttggggctatgtaccccaatatcatcctcaccaaccgcctgcagccg
tccgccatagttgatgaggccacttgtgccgcctgtgactttaacaagcatggtgccacc
tgccagaggaaaatggcctggcagtggagaggggagatcatgcctgccagccgcagtgag
tttcaccgaatccagcagcaactggagtctgagaagttcccgccctatttccccaacggc
ccacctcgggccttccactctctcaacaaggaggagcaggccaaacacgagaagaaacgt
ctggcagactactgtaagagggcctacaagaagacacacgtcaccaagctggaggagcgc
accaccaccatctgccagagagagaactccttctacgttgacaccgtgagagctttcaga
gatcgtcgctacgaattcaaaggactccacaaggtgtggaagaagaaactgtcggcagct
caggagagcggagacgctgctgaggtgaagcgctgcaaaaacatggagatcctgtacgat
tctcttcagctggctcacaagtgtattctcaactctttctacggctacgtcatgaggaaa
ggggcgcgctggtactccatggagatggctggcattgtgtgcttcactggagccaacatc
atcactcaggccagagagcttgtcgaacaaatagggaggcccctggagttagacactgac
gggatctggtgtgtcctccccaacaccttccccgagaactttgtgattaaaaccaacaat
gagaagaagcccaaggtgaccatctcctaccccggagccatgctgaacatcatggtgaag
gagggattcaccaacgatcagtaccacgagctggtcgaccccgcgaccctcacttaccaa
accagggccgagaacagcatcttctttgaggtggacggaccgtacctggccatgatcctg
cccgcatccaaggaggaagggaagaagctgaagaaaaggtacgctgtatttaatgaggac
ggctccctggctgagctgaagggtttcgaaatcaagagacgaggagagctgcagctcatt
aagattttccagtcgtcagtgtttgaggctttcctcaaaggcaccaatctggaggaggtg
tacgcctctgtggccaaagtggctgactactggctggacgttctgtacagcaaggctgcc
aacatgccagaccaggagctgtttgaactggtttctgagaatcgttcgatgtccagaaag
ctggaggactacggagagcagaagtccacctccatcagcacagctaagagactggcggag
ttcctgggagaccagatggtgaaagatgctggtctgagctgtcgctacgtcatctcccgg
aaacctgagggtgcgcctgtcacagagagagccattcctctggccatcttccaggcggag
cccagtgtgaagaagcatttccttcgtaagtggctgaagatgcccagcattcatgacttt
gacatccgatcgatccttgattggaattattacatagagaggttgggtagtgccatccag
aaaatcatcaccatccctgcagctcttcaacaggtgaagaatccggtacccagagtgagg
caccctgactggctgcacaagaaacttctggagaaaaatgatgtcttcaagcagaagaaa
atcagtgagctgttcaccagcgagggcaagagacaggtggcccatcagcctctggaagca
ggccaaaccgcggacatagaggactttgggaggccccccagacctctgcagccggccatc
ctcatcagcaccaagcgcaaacgggcgtctcaggcagaggagagccaagtggagtcgcag
gatgtggagctcactcagtcctggagggagatcctgggggcgcccccggctgtgggaaac
tcacgggaggagatcctggtgtggctgcggtaccataagaagaagtgggagctccagctg
aggcagaggaaggagagaaagaagaggaggaggctgctggatggtgaagctcaacccgtg
ggggggggagtgatccgggatcagggccccaccggcggcctggggagcttcctccgcaaa
acagcacgcagcatcctggacatgccatggcagattgtgcagattgcagagaccagtcac
cccggcctgtacaagctgtgggctgtgatcggaaacgacctccactgcatgaagctcaac
atcccacgtgtgttctatgtcaatcagaaagtcccaaagcaggaggagggagccacctac
aaaaaggtaccggctcacattacttttgcgacctgccacaaaaatactatggacacaaag
tatctgaggaagctaagccccgctctccagtcggcaactaggtattaccacttacccgtg
gggaacttgcctcaggatgtgtccatctttggctcagatctgttcctggcacgacatctg
aggaaacacaaccacctgctgtggctctcccccaccgccaggcctgatctgggaggaaag
gaggccgatgacagtcgtctggtgatggaaagtgatgacaggggctcggtggagatcaat
gctcagggatgctattccacagtgtgtgtggagttggacctgcagagccttgcggtgaac
accatcctccaatcacaacatgtcaacgacatggagggcggggctagcttgggtgtcagt
tttgatgtgatccagcaggcctcgttggaggacatgatgtcagggaaccagggagccagc
gctctggccagctatgatgagacggctctctgctccaacaccttcaggatcttgaagagc
atggtggttgggtgggtcagagagatcacacagtaccacaacgtgtatgcagacaaccag
gtgatgcacttctaccgctggctgcgctcccccagctctctgctctacgaccccgccctg
caccgcaccctgcacaacatgatgaagaaggtgtttctacagttggtttcagagttcaaa
cgtctcggctccactgtggtgtacggaaacttcaacaggatcatgttgtgcactaaaaaa
cggaggatagatgatgccattagttatgtggagtacatcaccaacagcatccactccaga
gaaatcttccactctctgtccatctccttctcccgatgctgggagttcctgatgtggatg
gatccgtcaaacttcagcggtgtgaagggcaaactgccctccagcctcatgagcggagag
gacggagccaaacagaagaaaaagagccgaggagagggagatgaggaaggcagtgaggat
gaagaggaggatccagttgaggaagatgatggtgatggtgagacggatgaagtggaggag
ctcattgagagcaactggaacatcatgcagtatctccctgaaactgcctcctgtcagaaa
tacttcctcatgattgtctccgcctacattgcagcagtgtaccacagcatgaaagaggag
ctgagacgcaacgctcctggggccacgccggtcaagaggcgtggaggcagccaggctacc
cagcaggccgtgggggacttgagtgcccttcctggaatgatcgtcttctcccaggaatac
gtgtccagtgagctgacacagaactttttcaccatcactcaaaaaatccagaagaaggtg
tcgggtaccaggggggtcaaccagccctcagagatgttccccgtcctgcctggatcccac
ctgcttctcaacaacccagcactggagttcatcaaatacgtctgccaggtcctgtctctg
gatgccaacatagtgaaccaggtgaacaagctgaagagagacctcctgcgtctcgtggac
gtcggagagttttcaatgcaagcccagttcagtgacccctgtaactcctacatcctgcca
gaggtcatctgccaccaatgcaatttctgccgtgacctcgacctctgcaaggacccatct
gtggcacaggatgggtccgtcttgcctcagtggttctgctcaaactgccagacgcagtat
gacactgagtctattgagatggctctggtggaagctctgcagaagaaaatgatgagctac
acactgcaggatctggtgtgcaccaaatgtaaaggagtgaaggaagcaaacatgccgctg
tactgcaaatgtgccggagacttcatcctcaccttctcagccaagagcctctttgatcag
atcacggtgtttcggaatatcgcatcccactacagcatgagctacctggaggagacgatc
gactggctgctcgtcatgagcccacagatcagccagagcgctctctga
DBGET
integrated database retrieval system
