KEGG   Notothenia coriiceps (black rockcod): 104945323
Entry
104945323         CDS       T04920                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
ncc  Notothenia coriiceps (black rockcod)
Pathway
ncc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ncc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104945323 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncc03019]
    104945323 (exosc1)
Messenger RNA biogenesis [BR:ncc03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     104945323 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     104945323 (exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N S1_RRP4
Other DBs
NCBI-GeneID: 104945323
NCBI-ProteinID: XP_010769270
UniProt: A0A6I9N5D3
LinkDB
Position
Unknown
AA seq 194 aa
MSPMKLCVPGDKLCSTEDCIPGTGIYLRHGCIYSSLTGYVLKKNEGEELPVISVVRETET
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPISWCEMQCPQTHSKE
FRKVARVQPEFLQA
NT seq 585 nt   +upstreamnt  +downstreamnt
atgtcgcctatgaagctgtgtgttccaggtgacaagctatgcagcacagaagactgtatt
cccggcacaggaatttatctgcgacacggctgcatttactcctcactaacaggctatgtg
cttaagaaaaatgaaggagaggagttaccagtgatctcggttgtaagggaaacagaaaca
caactactaccagatgtaggagctatagtcacctgtaaggtgaccagcattaaccccagg
ttcgcaaaagtccacatcctttatgtgggctccacaccgctgaaggaccgcttcagagga
actatcaggaaagaagatgtgcgtgccacagagaaagacaaggtagagacgtacaaaagc
ttcagacctggcgatatcgtcttggccaaagttatttctctcggagacgtgcagtcaaac
tacctgttgacaacagcagagaacgagctgggggtggtggtggcacacagtgaagcaggt
gcccagatggttcccatcagctggtgtgagatgcagtgcccgcagacgcacagcaaagaa
ttccggaaagtggcgcgagtgcagccggagtttcttcaggcatga

DBGET integrated database retrieval system