Notothenia coriiceps (black rockcod): 104945743
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Entry
104945743 CDS
T04920
Symbol
ighmbp2
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ncc03009
]
104945743 (ighmbp2)
03012 Translation factors [BR:
ncc03012
]
104945743 (ighmbp2)
Enzymes [BR:
ncc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104945743 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
104945743 (ighmbp2)
Ribosome biogenesis [BR:
ncc03009
]
Eukaryotic type
Other ribosome biogenesis factors
104945743 (ighmbp2)
Translation factors [BR:
ncc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104945743 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
R3H
AAA_19
zf-AN1
Viral_helicase1
DEAD
ResIII
nSTAND3
UvrD-helicase
Helicase_RecD
IstB_IS21
AAA_16
AAA_22
Flavi_DEAD
ABC_tran
SLFN-g3_helicase
PhoH
DnaB_C
AAA_25
NPHP3_N
AAA
SRP54
AAA_31
ATPase
Zot
HEM4
Motif
Other DBs
NCBI-GeneID:
104945743
NCBI-ProteinID:
XP_010769758
UniProt:
A0A6I9N2K6
LinkDB
All DBs
Position
Unknown
AA seq
981 aa
AA seq
DB search
MAVEQFVSKTLELLQEEREAEIEENRIWQENISLKDLQSKGVCLLKLQISSQSTGLYGRT
VVIFEPRKHLGFTSLPSNSFGPGDIVGLYDTGGCTAASQIGTGIVTRVSQTAISVAFDDS
NDGLSFDTDGLHNLLKLANDVTYKRMKNALNTLNGYRNGPAANLIDVLFGDSTPSSQTQP
NEFKFFNSNLDDSQREAVSFTLSQRELAVIHGPPGTGKTTTVVEIILQAVKQGQKVLCCA
PSNVAVDNLVERLAQCKAKVLRLGHPARLLESIQKHSLDAILAQSDSAGIIADIRKDMDK
AFVGIKKMRERGDRVNYKREIGELRKELRTREATAIAQILKSADVVLSTNTGACHTGPLK
YLPAEHFDWVVIDECAQALESSCWIALLRARKCILAGDYKQLPPTIKSQKAASKGLSLSL
MERLIQMYGDSVVRMLTVQYRMNSAIMDWASKEMYQGRLTAHSSVEKHLLKDLPGVACVE
ETSTPLLLIDTAGCGLSEMEVTEEQSKGNQGEVDIVELHIKALTEAGVKAKDIAVIAPYN
LQVDLLRQKLSARHPELEIKSVDGFQGREKEAVVLSLVRSNRKGAVGFLSEDRRINVAVT
RARRHIAVVCDTQTVQNHAFLKSLIDHMTQRGEVRTAFEYIQDIAPQNYTRDPKDTKSSS
SSTSTKQKVKDQPPSRTKPPQKSSTGSSANENTAGKEKHAKSSLTCLTEEEQKKNRTAEI
TAQVESFLKDSNRSELQFPSSFNSHDRLLVHQIAEGMGLVHESKGEGKDRCITVARPLES
TPAEEPPQEEEEEEKVQSPQKEQLSETALDLKXXXXXXXXXXXXXXXKPRSNGTRPSYLQ
DKQKHTLAKGXSKTKTGACGIAAAAAPDEDFDTLINAVIKAERVCSFLRCKASVLMLGQL
CLFCNRQYCLSHHIPEVHGCGDKAKSHARMRISKEGVLYAGSGKKDKTMDPNKKAYLQRK
LDSKLKDMSTQRKPKQKENES
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggaacagtttgtgtcaaaaacacttgagcttctacaggaggaaagggaggct
gaaatagaggagaacaggatatggcaggagaacatctctctgaaggatcttcagagtaaa
ggggtttgcctgctgaaattgcagataagcagtcagtccacaggtctgtacggtcgcaca
gtcgtcatcttcgagccacggaaacatttgggttttacatctctgccaagcaacagcttt
ggacctggtgacatagtgggcttgtatgacactggtggatgcaccgcagcctcacagatt
ggcacagggatagtgacaagggtcagccaaactgcgataagtgtggcctttgatgattca
aacgatggcctgagcttcgatacagatggtcttcacaacctcttaaaattggcaaatgat
gttacctacaaacgaatgaaaaatgccttgaatacattaaatggatacagaaatggacct
gcggccaatctgatagacgttctctttggagactcaacaccttcttcacaaacacagcca
aacgagtttaaattctttaactccaacctggatgattcccagagagaagctgtgtccttt
actctgtctcagagagaattagctgtgattcatggaccgccaggcactgggaaaaccacc
actgtggtcgagatcatcctgcaagcagtcaagcaaggccaaaaggtcttgtgctgtgct
ccatccaacgtggcggtggataatttagtagagaggttagcccaatgcaaggctaaagtc
ctgaggctgggtcaccctgccagactgctggagtccatacagaaacactcactggacgcc
atcctcgctcagagtgacagtgcaggcatcattgcagacatccgtaaagacatggacaaa
gcatttgtgggaataaagaagatgcgtgaaagaggagaccgggtgaactacaaaagggaa
ataggggagctaagaaaagagctgagaaccagggaggcaacagccatcgcccagatcctc
aaaagtgctgatgttgtgttatcaaccaacacaggtgcttgtcacactggtccgctcaag
tacctgccagcggagcactttgattgggtggtgatagacgagtgcgctcaggcgctggag
agcagctgctggatcgccctgctccgagcacgcaagtgcatcctggctggagactacaag
cagctaccaccgaccatcaaatcacaaaaggctgcatcaaaaggcctgtccctcagcctc
atggagagactcatccagatgtacggggactcggtggtccgcatgctaacagtccagtac
cgcatgaacagtgccatcatggactgggcctccaaagagatgtaccagggacgacttaca
gctcacagctctgtggagaaacacctgttaaaagatctacctggagtcgcctgtgttgaa
gagaccagcacgccgctccttcttatcgacacagcaggctgcggtctgagcgagatggag
gtcactgaggagcagtccaaaggcaatcaaggtgaggtcgacatcgttgaactgcacata
aaggccttgactgaagctggggttaaagctaaagacatcgctgttatcgctccgtacaat
ctacaggtggatcttctgcgtcagaagctttctgcgaggcatcctgagctggagataaag
tcagtggatggatttcagggcagagagaaggaggccgtggtgttgtccttagttcggtcc
aacaggaaaggggcagttggatttctgtcagaggaccgaaggattaacgtggctgtaacg
cgtgcgaggcgtcacatcgctgttgtgtgcgacacgcagaccgtccagaatcacgctttc
ctgaagtccctgatcgatcacatgactcaacgtggcgaggtcagaacagcatttgagtac
atccaagacatcgcgccacaaaactacacccgtgaccccaaagacacaaagtcttccagc
agctccacgtccaccaaacagaaggtcaaagatcagcctcccagcaggacgaagccaccg
cagaagagttcaaccggaagcagcgctaatgaaaatactgcagggaaagagaagcacgca
aagtccagcttaacatgcctgacagaggaagagcagaagaagaacagaactgctgagatc
acggcacaggtggagagctttctgaaggactcaaatcggagtgaactacagttcccatca
tcctttaactctcatgaccgcctgctggttcaccagatcgctgaggggatgggcctcgtg
catgagagtaaaggggaggggaaggacaggtgcatcactgtcgccagacccctggagtca
acacccgctgaggagccaccacaggaagaagaagaagaagaaaaagtccagagtccccag
aaagagcagctttctgaaaccgcattagacttaaaannnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnaaaccaagaagcaacggaactcgaccgtcctacttacaa
gacaaacaaaaacacacactcgcaaagggctaaagtaaaacgaagaccggcgcctgcggc
atcgctgctgccgccgctccagatgaagacttcgacacactcatcaacgccgtcataaag
gctgaacgtgtgtgcagcttcctgaggtgcaaagcttctgtgctgatgctcggacagctt
tgcctgttctgcaacaggcagtactgtctcagtcatcatataccagaggttcacggctgc
ggagataaagccaagtctcacgctcggatgagaataagcaaagagggcgttctttacgcc
ggcagcgggaagaaggataaaaccatggaccccaacaagaaagcctatctgcagaggaaa
ctggattctaaactgaaagatatgtccacacagaggaagccaaaacagaaagaaaatgaa
agttaa
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