Notothenia coriiceps (black rockcod): 104946175
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Entry
104946175 CDS
T04920
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1-like
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04517
IgSF CAM signaling
ncc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
104946175
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104946175
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ncc04812
]
104946175
Cytoskeleton proteins [BR:
ncc04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
104946175
Intermediate filaments
Intermediate filament-binding proteins
104946175
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CREPT
Snapin_Pallidin
Motif
Other DBs
NCBI-GeneID:
104946175
NCBI-ProteinID:
XP_010770255
UniProt:
A0A6I9N863
LinkDB
All DBs
Position
Unknown
AA seq
946 aa
AA seq
DB search
MGGVRKNCRVALAKLTPHSPDRSRQVGGMDRRQEGRRKHTAEQTQTNGRTDGRTEEEVGG
WRDGEGATEQISKRQSQIDRLYVSLKDLVEERKSRLEQQYWLYQLNREVDELEQWIAQRE
VVASSPELGQDYEHVTVLQEKFTDFASETGSVGQERVTAVNQMVDELIDYGHAEAATIAE
WKDGVNEAWADLLELMETRAQMLAASHQLHKFFSDCREVLAQIEDKHRRLPEVRARQGSA
ANTSTLQRLLHSFEQDIQLLVTQVRQLQESAAQLRTVYAGEKAEAIAFREHEVMQCWKEL
LTSCEECRVQITTETDKLRFFSMVRDQITWMESIICQIGTGEKPKDVSSVEVLMNYHQSL
KSEVEARSRSTLECIEMGKTLLAARNPAAEEIKEKLDKVITKQYELSEKWDNHWDALQQL
LEVHQFAQEAVVAEAWLTAQEPLISSNELGASVDEVEQLIRRHEAFRKAAATWEERFSSL
RRITTVEKLRAEQSQLPPTPLLGRKVFLDPQDASANVSTLPRLPLSPIMRQTIYEQNEAN
SPPSPSPATPTPSPSSVARRLGSTVANYTPVMNGSGYRQSLEARQGSVVGFAAGLGQPTP
FSIASVATAAMLVSANQVRESPSPAREQATKGMSYLQPSQAARSPEVKSSAYLRQPKIKH
LDDAVTPLLVASRLERARERERGREREIMMGEIGTEKAEVAVMAEVVLTEPGRERLHSEP
TRGPRGSRTDPLGHAEPQVHTHGQHRIERQLSSEQLIQARRDELPQELWREQAERRDRKT
LERQTSSEQEGPVAPGGHEGRRRERDRHRLDRQESSEHDTGREQSDRRSGGGEKRSTMAE
IVEQLQEREAAQARGEVARLPNGVPEKITKQSLERPRARDRPKPRRRPRPKEAGETTRRS
RSAPAQSSPSVPLQPTHTAHHEGFLFRKLDIETLKKSTNRWVFRVM
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgggaggagtcaggaagaactgcagagtggctcttgctaagctaacacctcactcacct
gaccggagcagacaggtgggcgggatggaccggcgccaagaagggaggaggaaacacact
gctgaacaaacacagaccaacggacgcacagacggacgcacggaggaggaggtgggggga
tggagggatggggagggggctaccgagcagatcagcaagcgtcagtcgcagatcgaccgt
ctgtacgtgtctctgaaggacctggtggaggagaggaagagccgcctggagcagcagtac
tggctctaccagctcaacagggaggtggacgagctggagcagtggatcgctcagagggag
gtggtggccagctcccctgaacttggtcaagactacgagcatgtcacggtcctgcaggag
aagttcacagactttgcgtcagagacgggcagcgtgggacaggagcgagtgaccgccgtc
aaccagatggtggacgagctgatcgactacggccacgcggaggccgccaccatcgctgag
tggaaagacggggtgaacgaggcctgggccgatctgctggagctgatggagacccgggcg
cagatgctcgccgcctcacaccagctgcacaagttcttctctgactgcagagaggttttg
gcccagatcgaggacaaacatcggaggcttcctgaagttcgggctcggcagggcagcgct
gccaacaccagcacgctgcagagactgctgcacagctttgagcaggacatacagctgctc
gtcacacaggtgcgtcagctgcaggagagcgcggctcagctgaggacggtgtatgccggg
gagaaggccgaagctatcgccttccgtgagcacgaagtgatgcagtgctggaaggagctg
cttacgtcctgcgaggagtgccgagtacagattaccaccgagaccgacaagctgaggttc
ttcagcatggtccgagatcagatcacttggatggaatccatcatctgtcagatagggaca
ggagaaaagcctaaggacgtgtcctcagtggaggtgctgatgaactatcaccagagtctg
aagagtgaggtggaggctcgcagccgcagcactctggagtgtatcgagatggggaaaact
ctgctggctgctagaaacccggcagctgaggagatcaaggagaagctagacaaggtaatc
accaagcaatacgagctgtctgagaagtgggacaaccactgggatgccctacagcaattg
ttggaggttcaccagtttgcgcaggaggctgtggtggcggaggcgtggctgaccgctcag
gagccgctcatcagcagcaacgagctgggggcgagcgtagacgaggtggagcagctgatt
cgtcggcatgaagcctttcgcaaagctgctgccacctgggaggagcgattcagctcactg
cgacgaatcaccacggtggaaaagttgagagcagagcagagtcagctacccccgacccct
ctgctgggtcgtaaagtcttcctggacccccaagatgcctcagcaaatgtatccaccctc
ccccgcctcccgctctcccccatcatgagacagaccatctatgagcagaacgaagccaat
tctcctccctcaccctcacccgccacacctacaccctccccctcatctgtggcccgtcgg
ctggggtccaccgtggctaattacacccccgtgatgaacggctccggctaccgccaaagc
ctggaggcgcggcagggcagcgtggtgggttttgctgcaggactaggccagcccacccct
ttctccatcgcctcggttgccacggcagccatgcttgtctcagccaatcaggtgagagag
agccccagcccggcgagagagcaagcaacaaaggggatgagttacctccagccatcacag
gcggcaagatctccagaggtgaagtcgtccgcgtatctacggcaacccaaaatcaaacac
ctggatgacgcagtgacgccgctgctcgtggccagccggctggagagggcgagggagcgg
gaaagggggagggagagggagataatgatgggagagatagggacggagaaagcggaggtg
gctgtgatggccgaggtggtgcttacggagccgggccgggagcgcctgcacagcgagccc
accagagggccccgggggtccagaactgacccgctgggccacgctgagcctcaggtccac
acacacggtcagcacaggatagagcggcagctgtccagcgagcagctgatccaggcccgc
agggacgagctgcctcaggagttgtggagggaacaggccgagaggcgggacaggaagacg
cttgagaggcaaacgtccagtgagcaggagggccccgtggcccccgggggccacgaaggc
cggcggagagagagggaccgacaccggctggacagacaagaatccagcgagcatgacacc
ggcagagagcaatctgaccgacgctcaggaggaggagaaaagagatccaccatggcagag
attgtagagcagctgcaggagagagaagcagcacaggcccgtggagaggtggcccgcctg
cctaatggtgtcccagagaaaataaccaaacagtcactggagcgacctcgagctcgggac
agacccaaaccacggcgccgaccacgacccaaagaggcgggagagaccacccggaggtcc
cggtccgctccggcccagagcagcccgagcgtccccctgcagcccacgcacactgcacat
cacgagggcttcctgttccgcaagctggacatcgagaccctgaagaagagtaccaatagg
tgggtgttcagggtcatgtag
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