Notothenia coriiceps (black rockcod): 104946281
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Entry
104946281 CDS
T04920
Symbol
scaf4
Name
(RefSeq) splicing factor, arginine/serine-rich 15 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncc03021
]
104946281 (scaf4)
03041 Spliceosome [BR:
ncc03041
]
104946281 (scaf4)
Transcription machinery [BR:
ncc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104946281 (scaf4)
Spliceosome [BR:
ncc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
104946281 (scaf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
104946281
NCBI-ProteinID:
XP_010770368
UniProt:
A0A6I9N4H9
LinkDB
All DBs
Position
Unknown
AA seq
638 aa
AA seq
DB search
MDAVNAFNHELFSLIDTKPPISRAKMISITKSAIKAMKLYKHVVQIVEKFIKKCKSEYKI
AGLYVVDSIVRQSRHQFGSDKDVFGPRFTKNITGTFENLCLCPEGDRSKIIRVLNLWQKN
GVFKIEIIQPLLDMAAGSCSAAALLAGSDDPGFSPSPAKEPVTAVTANSTMTSTSQLQNS
DAFAAVAQLFQSTQGQQVSLQQMLQTFQQQPVKPETNTSLHTTQTQAQHITTGPGMAPLQ
PPQPTQTAQQKAAFDKKLLDRFDYDDEPDFGEEAKKDEMSTQPSFMQNPPGFPQHMEHFK
PPMLNMLQDVSQQVPLPPNGQLQAYGLPPAQSFPGMVPHMGHAFPGQSPPGSAGPPGFPG
GYPPHNAAHQQEVSMDLDRSSSRDGRHGRRSHSGSRSPKRRRSRSNSRTRRSRHRRSRSR
DRRHHSPRARSQDHKEREKERERRQKGLPPPKGETLSICSTTLWVGQLDKRTHQQDVACL
LEEFGQIDSINMIPPRGCAYIVMIHRQDAFKALQKLSRGSHKVNQKTIKIAWALNKGIKA
DFKQYWDVELGVTYIPWSKIREAQLEELKEGGVLDSDTLSPEWSEARKTIGTQEEVTHNG
RSEPQPPQETQVLPVAAAPHAQVNNNNNNNNNCNMHLA
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggatgccgtcaacgcctttaaccatgagttattctcattgattgacaccaagccccca
atctctcgggctaagatgatctccatcacaaaatcggccatcaaagctatgaagctctac
aaacatgtggtccaaattgtggaaaagttcatcaaaaagtgtaagagtgagtacaagata
gcggggctttatgtggtggattccattgttagacagtccagacaccagtttggatcagac
aaggacgtgtttggcccaaggttcaccaaaaacataacgggaacctttgagaacctctgc
ctatgcccagaaggggacaggagtaaaatcatacgggtgttgaacctgtggcagaaaaat
ggagtgttcaagattgagattattcagcctctcctggacatggcagctggctcttgcagt
gctgctgcactcttagcaggctccgatgacccaggtttttccccatctccagccaaagag
cccgttactgcggtaacggcaaactccaccatgacatccacttctcagctgcaaaactct
gacgcctttgctgccgtggctcagctcttccagtccacacagggtcagcaggtgagtctt
caacagatgctccagactttccagcagcagccagtgaagcctgaaacaaacacgtctctc
cataccactcaaacgcaggcccaacacatcaccactggcccgggcatggcccccctgcaa
cccccgcagcccacccaaaccgcccagcagaaggcagcctttgacaagaaattgctggat
cgctttgactatgatgatgaaccagactttggagaagaggcgaagaaggatgaaatgtca
actcagccctctttcatgcagaaccctccaggcttcccacagcacatggagcactttaaa
cctccgatgctcaacatgttgcaagacgtctcacaacaggttcctctccctccgaatggc
cagctccaggcctacggtttaccgccagcgcaaagcttcccaggtatggtgcctcatatg
gggcatgctttcccagggcaatccccccctggttctgctgggcctccaggcttccccggg
ggataccctccccacaatgctgcccatcaacaggaagtgtcaatggatttggaccgttca
tcttcaagggatggcagacatggtcgacggtcacactcaggctccaggtctccaaagcgg
aggaggtcacggtctaattcccgtacacggagatccaggcacagacgatcgcgctccaga
gaccggcgtcaccactccccccgcgctcgctcgcaggaccacaaggagagagagaaggag
agagagcgacggcagaaaggcctcccgccacccaagggcgagacactgagcatttgcagt
acgactctgtgggtgggccagttggacaagagaacacaccagcaagatgtcgcctgttta
ctggaggagtttgggcagatagactccatcaatatgatccctccacgcggctgcgcctat
atagttatgatacatcgacaagatgccttcaaggctctgcagaagctgagcagaggatct
cataaagtgaaccagaaaaccatcaagattgcttgggctttaaacaagggcataaaggca
gatttcaaacagtactgggacgtggagttgggtgtcacctacataccgtggtctaagatc
agagaggctcagttggaggagctaaaagaaggaggagttctggattcggacaccttatca
ccagagtggagtgaagcgaggaaaactattggcacccaggaggaagtcacacacaacggc
cgttcagagccacagccgcctcaggaaacacaagttctacctgtggctgctgcgcctcat
gctcaggtaaacaacaacaacaacaacaacaacaactgcaatatgcacctagcttaa
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