Notothenia coriiceps (black rockcod): 104946947
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Entry
104946947 CDS
T04920
Symbol
sox1
Name
(RefSeq) transcription factor SOX-1 isoform X1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncc03000
]
104946947 (sox1)
Transcription factors [BR:
ncc03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
104946947 (sox1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
104946947
NCBI-ProteinID:
XP_010771168
UniProt:
A0A6I9N6U5
LinkDB
All DBs
Position
Unknown
AA seq
345 aa
AA seq
DB search
MYSMMMETDLHSPGPQTNTNTGQTGPNSGSKANQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGPGGGVGMGVGMGVGMGSSGVGQRLESPGGHGGSAGSGYAHMNGWANGAYS
GQVAAAAAAAAMMQEAQLAYSQHPGSGVHHHHSHHHHSHNPQPMHRYDMTALQYSPISNS
QSYMNASPSGYGGISYSQHQGSGVSSSAAMGTLGSLVKSEPSVSPPVSSTHSRGPCPGDL
REMISMYLPTGEPGDPSMQSRLHALPQHYQSATAGVNGTVPLTHI
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggaaactgacctccattcccccggtccccaaacgaacacaaac
acggggcaaacggggccgaacagtgggtccaaagcgaaccaggagcgggtgaagagaccg
atgaacgcgttcatggtttggtcccggggccagcggaggaagatggcacaggagaaccca
aaaatgcacaactctgagatcagcaagcggctgggcgcagagtggaaagtgatgtccgag
gctgagaagagacctttcatcgacgaggcgaaacggttgcgagccatgcacatgaaggag
catccggattacaagtaccggccaagacggaagaccaagacgctgctgaaaaaggacaaa
tattccctcgctggtggactgctttctgggccaggcggtggagttggaatgggagttgga
atgggagtcgggatgggttcatccggggtcgggcagagattagagagccccgggggtcac
ggaggctccgccggctccggctacgcgcacatgaacggctgggcgaacggtgcgtactcg
gggcaggtggcagcagccgcggcggccgcagcgatgatgcaggaggcgcagctcgcctac
agccagcaccctggcagcggggtgcaccaccaccactcacaccaccaccactcacacaac
ccgcagcccatgcaccgctacgacatgacggccctgcagtacagccccatctcgaactct
cagagctacatgaacgcttctccatccggctacggcgggatcagctactcacagcaccag
ggctccggcgtctcctcctcggctgccatggggacgttagggtcgcttgtgaagtcggag
ccgagtgtaagccctcccgtcagcagcacacactcacggggtccttgccccggagacttg
agagagatgataagcatgtatttaccgaccggagagccgggggacccgtcaatgcaaagt
agactccatgccttgccgcagcattaccagagcgccacggctggagtgaacgggacggtc
cctctaacacacatttaa
DBGET
integrated database retrieval system
