Notothenia coriiceps (black rockcod): 104947148
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Entry
104947148 CDS
T04920
Symbol
helz2
Name
(RefSeq) helicase with zinc finger domain 2
KO
K25165
3'-5' exoribonuclease HELZ2 [EC:
3.1.13.1
5.6.2.6
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncc03019
]
104947148 (helz2)
Enzymes [BR:
ncc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
104947148 (helz2)
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104947148 (helz2)
Messenger RNA biogenesis [BR:
ncc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104947148 (helz2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
RNB
AAA_19
AAA_30
UvrD_C_2
ResIII
PhoH
UvrD-helicase
AAA_22
DEAD
SLFN-g3_helicase
nSTAND3
AAA
OB_Dis3
AAA_24
DUF4878
Motif
Other DBs
NCBI-GeneID:
104947148
NCBI-ProteinID:
XP_010771410
UniProt:
A0A6I9NAN9
LinkDB
All DBs
Position
Unknown
AA seq
2962 aa
AA seq
DB search
MSAANLAPLTPKYDLKLVCTKCSVEEKEITYRLKPVQHQCARNLLLCRAKCGSKWRPVSK
RPTFPNPVRYEVCYFFKEGQGCSYHKNRCTFARSDEEADVWTFEKCHRINHVSLCNLVAQ
SEGGADSESLRDLPALDLKAVCDLCSVKENEISYTVQSVSHKCSRNLLLAKDKACDLWRP
VSERPTCGRNVFYQVCQFFVEGSGCTKHGQTCTYARSDEEATLWNYVKDKRIGREEFIRL
VVESEPISITPESTAESILQQFPGEFIELCKRCFNDKPQQLTTKRWTPSCSADAAHPWDP
VLVHHLSENKRKHVYSQVRPLPQNCHFEFCSHVTEGKPCWHQVGRCQAAHSEVEMAVWRV
EHGGVSVRPYVLQLSRQQQAEQRLKEQLTEQQLTEQQLTEQLTEQQLTEQLTEQQLTEQL
TEQLTEQRQAEQRQAEQRQAEQRQAEQRQVEQRPVSMYCRVCLLVLSSPESFFEHCSSLE
HAQLLSEDTTTRWRGRQPPHNHRAEFWLCERPQTCEYGSKCPKAHSEEELKEWLMRAAEE
KEIRQSIGAQGLMNYNLELLEEYKNSSNEVHILSEQVNDVSISCDGDVTVECEQINETLR
WNFQVETERQLVHVALLKQEPGASYTLGDISSVPCIYSPGEPFLTDDMTYDITVSFTSIN
PGLYDQWLVLDFDMRPVLLKKLRVRVGKLSLDDVVQPTVTFGYTFQSAERWHRGNRVIIP
CSSRTEEQEKLLKKYKPPPISFLYKSSYSSQTPLNSDNYKERMHQFLYDEEQAEDQIVSR
LNVCGGITTLGTLNSTQFGMMMAPRGELFCAVSIPCKLTPDTPEGLALKRSIQSALIAPL
SESSQSSKVYEASILKDKTSENTMYLQLSKKCCSDLTLRSNESYQMEVQFQLNRHSFCTM
HKAVDLLPDTKRVLPDLKHCGVPVNNIKHEKLNPKQQSAVDFITGSSNVQKYSAPLLIYG
PFGTGKTFTLALAARELCKLPHNKVLICTHTNSSADLYVRDHFDPFINKKDDGTRPIRIK
VNKQGKALFATDEITLKYCLLSEDKQSFLPPTKAALDRHKIVITTTTMARHFHDLNLPEG
YFTHILIDEASQMLECEALMALGLAGPQTRVVLAGDHMQMGPKLFSVDDHHRSNHTLLNR
LFHYYQGQKCDAAQNSRIIFSENYRSTKEIVEFVSTNFYVGKNDFIKAKGNVPPPANGNA
LKFHHVRGACLLDTGSMSWCNKEEVVKVAEAVKEVLEQWPLTWGPKDPSSICILSDGCQV
WQIRKALSKRGLNEVHVENLANVQGKQFRAVIMTAVQTRDSLKTSHLPGLELFNDVRVLN
TAMTRAQSQVVVVGDAAALCCFGNCSKVWKSYIDHCISNNSVTPKHFTMDFFMKDVMETT
RFQKPEHVDEGSPLSDAILQELKDDYELLKKEHNLDEDKWKCKDFNNHRSRSSYNISDVD
ADLLKYPGMYKHGKLFRESYNKGYVVPFDNPTSRIRIKGRDNMGKTFTGDEVVLQTAKVI
SITKQSESARVLVCLLEDEDHSKPRQNSEETFIKRTMIPIAKSAPKIRILISKRKRNCIP
IWEKMNGQWTTAAFEHLDEKLKQNNVFVVQIIGWKENCHIPLGNVIDILPIGSSLVDGLR
ILNEEFKVEPNTCNPDEGLFSQDEDGTHREDLSHMITFTVDPKEAKDLDDAISVRDIGEH
EYELGVHIADVASFVIPGCELDKEAEQRGATYYSSSVDPVHMFPKELSTGTFSLLSDGKQ
CRVVSLMFKVNKKTNEIIGKHKLQLSGIKSNRQLSYDEAEAIITDRYREGPAFDSVEDCV
TVAYRFAKARRKDRLGSDWAYSQPDDKRLPGKRKANMMVEELSVLFNTLASKDLIDSKKT
LDCTPLRCQSKPDCEKIEDFKAKCGELIPLSFHVRHKVEGVDEVGEQPSNCENIRILTEV
WEDIQSAARADDIDKMVDLIAADDIHPPLQPVVDQFRKCFCKAKVICSSSYSREVFRHYS
LNVDSYTQATSPIRRYMDLISQRLLHSIIHDRRAQYTTPEIATLCSQFEDNVKNAKEYEQ
KAEQISYAVSMKKQSASKLAFVGSPNRDSVPVAFPFNKNIFRESVSVMFKDLQLCDQPIF
DEENDCITLTWKRRVYAVDNMQIHQELQMTDYGPCVELPLATWKATVEAIDQGNWDHAKS
LTMEANTKQQEKQIILPQSSEMPAPKSKSCDSEEQEEQREHEVDIHLRLQRGDTLQIQMT
TEVRRGYNSPAVQLVRIKPRFEICVDHVHSAITCFAKYAEEPSKILYRDTNEYVQIWKPL
CKMESASTAVDDSDSIVIENLVVNFCQKQERRLTGSFFLPIASITKWAIECNLSKCLLCI
RKRGLTLPSTPEHSALADPKVFTWVAHGVTVKAEQKKPPNEGSEVEFYVHHLPMENIPDC
VFQKNTYFTVEIIPKSLPEIRKEEAVENIPYACDLVKAIALGKHIPKEVKPMWNHQRKEL
PYGLTQFNQSQHLAVEKALNNTFTIIQGPPGTGKTVVGVKIVFGFFELNAKSPRTDVDPR
DENKKQVILYCGPSNKSVDVVAEYLLRFGDRLRPLRFYSQHVEMLDYPYPDCALQFSRRS
IRQERAKPELRSITLHHRMREDTNPSSGQIKDFDLRIKLALEKGKKLTPIEVKEYKKLLV
KARKYEFERHDIILCTCSQSSTPNLTKTVSARQILIDECAMATEPQALIPLVCNRPEKIV
LIGDHKQLRPIVKNVHVRRLGMAKSLFERYHTMHKKSAVMLDTQYRMHKEICEFPSREFY
EGNLLTGVEQPSSVLRVDNKTMPIVFGDIRGKTVSLVVNTAKGNENSKANEEERIKVIDI
AEKLVTKANIEQQNIVILSPYNAQVSEIRDGLKKKKLNGITATTITKSQGSEWSYVIIST
VCSLPSEEIEAEPEGGWLSRHLGFVADPNQINVGITRAKEGLCIIGNQELLNCGRTWKKL
LDHFKLHNAVTDADKISVLAST
NT seq
8889 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccgccaaccttgctcctcttacaccaaaatatgacctcaaacttgtatgcact
aaatgctctgtcgaggagaaagaaattacctacaggttaaaaccagttcaacaccagtgt
gcacgcaacctcctgctctgcagagccaaatgtggcagcaaatggaggcctgtgtcaaag
aggcccacgtttcctaatcccgttcggtatgaggtgtgttacttctttaaggagggtcaa
ggctgctcgtaccacaagaatcggtgcacctttgccagaagtgatgaggaagctgatgtt
tggacatttgaaaagtgtcacaggatcaaccatgtgtcgctctgtaaccttgtagctcag
tctgagggaggagcggactctgagtctctgagggacctgccagctctagatctgaaggct
gtgtgtgatctgtgttctgtcaaagagaacgaaatatcatacacagttcagtcagtgagt
cacaagtgcagtagaaatcttcttttagccaaagacaaagcctgtgacctctggaggcct
gtctctgagcggcctacatgtggtcgaaacgtattttaccaagtgtgtcagttctttgtg
gagggctctgggtgcacaaagcacgggcagacgtgcacctatgccagaagcgatgaggag
gccactctgtggaactatgtgaaggacaaacgcattggtagagaggagttcatccgactt
gtagttgagtctgaaccgatttcgatcacaccggagagtacagctgaaagcattctccag
cagtttccaggtgaattcatcgagctctgcaaacgctgcttcaatgacaagccacaacaa
ctaacaaccaagagatggactccctcttgctcagcagatgcagcgcacccctgggaccca
gtcctagttcatcacctgtcagagaataagaggaagcacgtctacagccaggtgcgccct
ctcccccagaactgtcactttgagttctgcagtcatgtgacggaggggaagccctgctgg
caccaggtgggccgctgccaggctgcgcacagcgaggtggagatggccgtgtggagggta
gagcacggcggggtctccgtgcgaccttatgtcctgcagctgagccggcagcagcaggcg
gagcagcggctgaaggagcagctgacggagcagcagctgacggagcagcagctgacggag
cagctgacggagcagcagctgacggagcagctgacggagcagcagctgacggagcagcta
acagagcagctgacggagcagcggcaggcggagcagcggcaggcggagcagcggcaggcg
gagcagcggcaggcggagcagcggcaggtggagcagcggccggtctccatgtactgcaga
gtgtgcctgctggtgctctcctccccagagagcttcttcgagcactgctcctctctggag
cacgcccagctgctctctgaggacaccaccaccaggtggaggggccggcagcccccacac
aaccaccgggctgagttctggctctgcgagagaccacaaacatgtgagtacggcagcaag
tgccccaaagctcactctgaggaggagctgaaggagtggctgatgcgagctgcagaggag
aaggagatcagacagagcatcggagcccagggtctcatgaactataacctggagctgctg
gaggaatacaaaaacagcagtaatgaagtacacatattatcagagcaagtcaacgatgtc
agcatctcttgtgacggagatgtaactgtggagtgtgagcagatcaatgaaacactgcga
tggaacttccaagttgaaacagagagacagcttgtgcacgtggcgctgctaaagcaagaa
ccaggagcttcctatacgctcggcgacatcagctcagtgccctgcatctactcccccggt
gaaccctttctcactgacgacatgacctatgacatcacagtgtctttcacatccatcaac
ccaggcctgtacgaccagtggttagtgctagattttgacatgagaccagtgctcttgaaa
aaactccgggttagagtaggcaagctttcattggatgacgttgtacaaccaacagtgacg
tttggatacacctttcaaagtgctgagcgctggcatcgaggaaaccgggttatcatccca
tgttcgtccaggacagaagaacaggagaaactgttaaagaagtacaagcctcctccgatt
agctttctgtataaatcctcctacagcagccaaacacctctgaacagtgacaactacaaa
gaaagaatgcaccagttcctgtacgatgaggaacaggcagaggaccagattgtttcaagg
ttaaatgtttgtggaggaattacaacattggggacgttgaacagtacacagtttggcatg
atgatggctcctcggggagaactgttctgtgctgtctccattccttgtaagctcactcca
gacacccctgagggactggcactgaaacgcagcatccagtctgccctgatagccccttta
tctgaaagtagtcaaagctccaaggtctatgaagccagcatactgaaagacaaaacaagt
gagaacaccatgtatttgcaactgtctaagaagtgttgctctgatcttacactcagaagc
aatgagtcgtatcaaatggaggtgcagttccagctcaatcgccacagcttctgcaccatg
cacaaggccgtagacctccttcctgatacaaaaagagtgctgccagaccttaaacactgt
ggagttcctgtgaataacatcaaacatgagaagctcaacccaaagcagcagtcagcagtt
gactttatcacaggaagctccaatgtccagaaatattcagcaccactcctcatctacggg
ccatttggaactgggaaaacattcacccttgctttagcagcccgagagctgtgtaagctg
cctcacaacaaagtgcttatttgcacccacaccaacagttctgcagatctgtacgtcaga
gatcacttcgatccattcatcaacaagaaagatgatggaacgagaccaattcgaataaaa
gtgaacaaacaagggaaagctttgtttgccacggatgagatcactttgaaatactgcttg
ctgtcggaagacaaacagtcttttttaccacctacaaaagctgctcttgatcgccacaaa
atagttataacaaccacaacaatggcaagacatttccatgacctaaatctcccagaggga
tattttacccacatactgattgatgaagcctctcagatgcttgaatgtgaagccttgatg
gcccttggccttgctggtccacaaaccagagttgttttggctggagatcacatgcaaatg
ggacccaagcttttctcagttgatgatcatcaccgttcaaatcacacactccttaatcgc
ctcttccactactatcaaggccaaaagtgtgatgctgcccagaatagtagaatcattttc
agtgaaaactaccgctcaaccaaagagattgtggagtttgtgtccaccaatttctacgtc
ggtaagaatgactttatcaaagctaaaggaaatgttccgcctcctgcaaatggcaatgcc
ttaaagtttcaccatgtcaggggagcatgtctcttggacactgggtctatgtcttggtgt
aacaaagaagaagttgtcaaagtggctgaagcagtgaaagaggttctcgaacagtggcca
ttgacatgggggcccaaggacccaagctcaatctgcattctatcagacggatgtcaggtc
tggcaaataaggaaagcactttcaaaaagaggcctcaatgaagtccatgttgagaatctt
gcaaatgtccaaggtaaacagttcagggcagtcataatgacagctgtgcaaacacgtgac
agcctgaaaacatctcacctacctggtctggagctgttcaatgatgtgcgtgtgttgaac
actgcaatgaccagagctcagtcccaggtggttgtggttggagatgctgctgccctctgt
tgctttgggaactgctcgaaggtctggaagagctacatagatcattgcatcagcaacaac
agtgtcacaccaaagcatttcaccatggatttcttcatgaaagatgtcatggaaactaca
aggtttcagaagcctgaacatgttgatgagggcagccctctcagtgatgcaattcttcaa
gagttgaaagatgactatgaactcctgaaaaaagaacacaatttggatgaggacaagtgg
aaatgtaaagacttcaacaaccataggtcaagatcatcatacaatatcagtgatgttgat
gcagatcttttgaaatatccagggatgtacaagcacggaaagttgttcagggagtcatat
aacaaaggttatgttgtaccatttgacaaccccacctcaagaatacgcatcaaaggaaga
gataacatgggtaagaccttcactggagacgaagtggtcttacaaacagcgaaggtgatc
agcatcaccaagcaatctgaatcagcccgcgttcttgtgtgtctgcttgaggatgaggat
cacagcaaaccaagacaaaattctgaagaaacatttatcaaaagaacgatgatacccatt
gcaaaatctgcccctaaaatacgcatactgatcagcaagagaaaacgtaactgcattcca
atatgggagaaaatgaatggtcagtggacgactgcagcatttgaacatcttgatgaaaag
ctcaaacagaacaatgtatttgtggtgcaaataattggatggaaagaaaattgtcatatt
ccattagggaacgtcatagatattcttcctattggaagttctttggttgacggtctacgg
atcctgaatgaagaattcaaagttgaacccaatacatgtaatccagacgagggtctcttc
tcacaagatgaagacgggacacacagagaggacttaagccatatgatcactttcacggtt
gaccccaaagaagcaaaagacttggacgacgccatcagcgttagggatattggagagcat
gagtatgagttgggagtccacattgcagatgtggccagctttgtgatcccaggttgtgaa
ttggacaaggaggcagaacaacgtggtgctacatattacagcagcagtgtagaccctgtg
cacatgttccccaaagagttaagcactggaaccttcagtcttctgtcagatggcaaacaa
tgcagggtggtatcattaatgttcaaagtaaacaagaaaacaaatgagatcattggaaag
cacaaactccagctgtcagggatcaagtctaacaggcagttgtcttatgacgaggcagag
gccataatcactgaccggtacagagagggacctgcatttgactctgtagaagactgtgtc
acagtggcttatcgttttgcaaaagctcgaaggaaggacagactgggctcagattgggct
tattctcaacctgatgataagagattgccaggaaagcgtaaagccaatatgatggttgaa
gagctgagtgtgttatttaatacacttgcatcaaaggatttgattgactcaaagaaaacc
ttggattgcacaccccttcgctgtcagtcaaaacctgattgtgaaaagatagaagatttc
aaggcgaaatgcggagaactaattcctctatcctttcatgtgcggcacaaagttgaagga
gttgacgaagttggcgaacaaccctcaaactgtgaaaacatccgcatactgacagaagtg
tgggaagatatccagtcagctgccagagcagatgatattgacaaaatggtggaccttata
gcggcagatgacatccatcctcctctccaaccagttgttgatcagttcagaaaatgtttt
tgtaaagctaaagtcatatgttccagctcctactccagagaagtgtttaggcattattct
ctgaacgtagattcttacacacaagcaacctccccaatacggcggtacatggacctcatc
tcgcagagacttttgcattccatcatacatgaccggagagcgcaatacactactcctgag
attgcaactttgtgtagtcaatttgaggacaacgtcaagaatgccaaggagtatgaacaa
aaggcagagcagatctcctatgcagtgagcatgaaaaaacaaagtgcttcaaagctagcc
tttgttgggagtcccaacagagacagtgttccagtggcatttccttttaacaagaacata
tttagagaaagtgtatcagttatgttcaaggatttacaattgtgtgaccaacccattttt
gatgaagaaaatgactgcatcactcttacatggaaaaggcgggtctatgcagttgacaac
atgcaaatccaccaagagttgcaaatgacagactatggtccttgcgttgagcttccactg
gcaacatggaaagccactgttgaagcaattgaccaaggaaactgggatcatgcaaagtct
ctcacaatggaagctaatactaagcagcaggaaaaacaaattattctgccacaatcttct
gaaatgccagctcccaaatcaaagtcatgtgactctgaggagcaggaggaacaaagggag
catgaggtcgacatccatttgcgtttgcagagaggggacacccttcagatccaaatgacc
actgaggtaagaagaggttacaactcgcctgctgttcagctggtgcgcattaaaccaagg
tttgagatctgtgtggaccatgtgcacagcgctatcacatgcttcgccaaatatgcagag
gaaccatcaaaaatcttgtatagagacaccaatgagtatgtacagatctggaaaccgtta
tgtaaaatggaatctgcttccactgcagtggatgacagtgacagcatagtcattgagaac
ctggtggtaaacttctgtcaaaagcaggaacgtcgcctaacaggaagcttcttcttacct
attgcatctatcactaaatgggccattgaatgtaacctttcaaagtgcttactgtgcata
cggaaaagaggtttgacgctaccttcaaccccggaacattctgctctggcggacccaaaa
gtgttcacatgggtggcccacggtgtcacagtaaaagcagaacaaaaaaaacctccaaat
gaaggaagtgaggtggagttctatgtccatcacctgccgatggagaacattcctgattgt
gtctttcagaaaaacacttatttcacagttgaaataatcccaaagtctctgcctgaaatc
cggaaagaagaggctgtggaaaacattccgtatgcatgtgaccttgtcaaggctatagca
cttggaaaacacattccaaaagaggtaaaaccaatgtggaaccaccagaggaaagagcta
ccgtatggactaacgcagtttaaccagagtcagcatcttgctgtggagaaagctctaaat
aataccttcacaattatacagggaccacctgggacgggaaagacagtcgttggtgtgaag
atagtgttcggtttctttgagctgaacgctaagagcccacggactgatgttgacccaagg
gatgagaacaagaaacaagttattctctactgcggcccatccaacaagtctgttgatgtt
gttgcagagtacctactgaggtttggggacagactacggcccctcaggttctacagccaa
cacgtggagatgcttgattacccctatccagactgcgctctgcagttttcccggaggtca
atccgccaagagcgtgccaaaccagagctcaggagcatcactctgcatcaccgcatgcgg
gaggacactaacccttcttcaggtcaaataaaagattttgatctacgcattaaacttgcc
ctggaaaaaggaaaaaagctgactcctatagaagtgaaagaatacaaaaaacttctcgta
aaggctcggaaatatgagtttgaacggcatgacatcatactgtgtacatgctcacagtct
tccaccccgaatctgactaagaccgtcagtgcacggcagatcctcattgatgaatgtgca
atggccactgaaccccaggccctgattccattagtctgcaaccggccagagaagattgtt
ttgatcggggaccataaacagttacgacccattgtgaagaatgtgcatgtgaggaggctg
gggatggccaagtctctgtttgaacgttaccatacgatgcataagaagagcgctgtgatg
ctggacacccagtacaggatgcataaggaaatatgtgagttcccgtcgcgagaattttac
gaggggaatctgttaaccggagtggagcagccgagcagcgtcctgcgtgttgacaataag
acgatgccgatcgtttttggggacatcagaggaaagaccgtcagcctggtggtcaacaca
gctaagggcaacgagaactccaaagccaacgaggaagagagaatcaaagtgattgacatt
gctgaaaagctggtgactaaagccaatatcgaacagcaaaatattgtgattctgtccccc
tataacgcgcaagtgtcagaaatccgagatgggctgaagaaaaagaaattgaatggaatc
accgccaccacaatcactaaaagccaaggaagtgaatggagctacgtcatcatatctaca
gtgtgctctctgccaagcgaggagattgaggcagaacctgaaggaggttggttgtccaga
catctgggctttgtggccgatcccaaccagataaatgtgggcatcaccagggccaaggag
ggactgtgcatcattgggaaccaggagctgctgaactgcggtcggacttggaaaaagctc
ctggaccatttcaagcttcacaatgcagtgacggacgcagacaagatctcagtgttggct
tccacatag
DBGET
integrated database retrieval system
