Notothenia coriiceps (black rockcod): 104947226
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Entry
104947226 CDS
T04920
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03030
DNA replication
ncc03410
Base excision repair
ncc03420
Nucleotide excision repair
ncc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104947226 (rfc5)
03410 Base excision repair
104947226 (rfc5)
03420 Nucleotide excision repair
104947226 (rfc5)
03430 Mismatch repair
104947226 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncc03032
]
104947226 (rfc5)
03036 Chromosome and associated proteins [BR:
ncc03036
]
104947226 (rfc5)
03400 DNA repair and recombination proteins [BR:
ncc03400
]
104947226 (rfc5)
DNA replication proteins [BR:
ncc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
104947226 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
104947226 (rfc5)
Chromosome and associated proteins [BR:
ncc03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
104947226 (rfc5)
DNA repair and recombination proteins [BR:
ncc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
104947226 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
104947226 (rfc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
RuvB_N
AAA_22
AAA_14
AAA_24
AAA_16
ResIII
DUF815
DEAD
AAA_assoc_2
AAA_7
ATPase_2
PhoH
TIP49
AAA_5
AAA_19
AAA_30
AAA_2
nSTAND3
DNAX_ATPase_lid
Mg_chelatase
Thioredoxin_6
AAA_3
bpMoxR
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
104947226
NCBI-ProteinID:
XP_010771505
UniProt:
A0A6I9NB31
LinkDB
All DBs
Position
Unknown
AA seq
335 aa
AA seq
DB search
MSSSSKLPLQSRNLPWVEKYRPQKLDDLISHKDILSTIQKFISEEKLPHLLFYGPPGTGK
TSTILACAKQLYKEKEFTSMVLELNASDDRGIDVVRGPVLSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRL
EYVVQQESIDINPGGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDTVYTCTGHPLRSD
IANILDWSLNKDFTSAYKQILQLKTLKGLALHDILTEIHLLIHRVDFPPAIRIGLLIKLA
DIEHRLASGTNEKIQLSSMVAAFQGVRDIVVSEAS
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcctcaagtaaactgccgttacagagcagaaacttaccatgggttgaaaaatac
agaccacagaagctcgatgatctgatctcacacaaagatattctaagcaccatccagaag
tttatcagtgaggaaaagcttccccatctcctgttctatggccctcctggaacaggaaaa
acttccaccatcctggcctgtgccaagcagctgtacaaggaaaaagagttcacctccatg
gtgttggagctaaatgcgtcggatgacagaggtattgatgttgtacgaggtcctgtcctt
agttttgcgagcaccaggaccatcttcaagaagggcttcaagttggtgatactggatgag
gccgatgccatgacccaggatgcccagaatgcattgcggcgagtgattgagaagtacaca
gaaaacactcgattctgtctgatctgcaactacctgtccaagatcatcccggctctgcag
tctcgatgcaccaggtttcgcttcggcccgctgtccccagaccagatgatccctcggctg
gagtacgtggtccagcaggagagtatcgacattaatccaggtggaatgaaggccattgtg
accttatcatcaggcgatatgagaagatcgctcaacatactgcagagcaccagcatggcg
tacgggaaggtgacagaggacacggtgtacacctgcacaggtcaccccctccgctcagat
atagccaacatcctcgactggtcgctcaacaaagacttcacctcagcgtacaagcaaatc
cttcagctgaagactttaaagggtttggccctgcatgatattctcactgagattcatctg
ctcatacacagagtggattttcctccagctattcggattggtctgctcatcaagttggct
gacattgaacacaggctcgcctcagggaccaacgagaagatccagctgagctccatggtg
gcagctttccaaggcgtgagagacatcgtggtcagcgaggcctcttag
DBGET
integrated database retrieval system
