Notothenia coriiceps (black rockcod): 104947666
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Entry
104947666 CDS
T04920
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104947666 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncc03021
]
104947666 (taf5)
03036 Chromosome and associated proteins [BR:
ncc03036
]
104947666 (taf5)
Transcription machinery [BR:
ncc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
104947666 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
104947666 (taf5)
Chromosome and associated proteins [BR:
ncc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
104947666 (taf5)
STAGA complex
104947666 (taf5)
TFTC complex
104947666 (taf5)
SAGA complex
104947666 (taf5)
SLIK complex
104947666 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_Nup120_160
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_WDR19_1st
WD_LRWD1
CDK5RAP3
LisH_TPL
VPS8_N
LisH_PAC1
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
104947666
NCBI-ProteinID:
XP_010772026
UniProt:
A0A6I9NCC0
LinkDB
All DBs
Position
Unknown
AA seq
749 aa
AA seq
DB search
MAAVQGGQVDAVEEKDIKTEPSNDGGGNNNANDGRLLSTSPGSSSSTGSIKSAAGPPEDQ
QTLLAVLQFLRKNKLTESVEILRREAGLPEDSLELKGGESSGSGSGAAAGSVELAGGDAS
SLLSRVTSSASAVAPAPTKAAGEDQPDVNVVLSAYSQQGDPPLYQVYYSGLKKFIESVLD
CHRAELSQVFYPLFVHMYLELVYNNHESEAKAFFEKFSGDQECYYEDDLRILSSLSKREH
MRGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKS
QIDAMSGSLAGEGKREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKKDSM
GSKSKKQDPNAPAQTRIPLPELKDSDKLDKIMYMKEATKRIRLGPEILPSICFYTFLNAY
QGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMDE
KTASELKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWD
TQFSPHGYYFISGGHDRVARLWATDHYQPLRIFSGHLADVTCTRFHPNSNYVATGSSDRT
IRVWDVLTGNCVRIFTGHKGPIHSLAFSPNGKFLASGATDSRVLLWDIGHGLMIGELKGH
TDTVYSLRFSRDGEILASGSMDNTVRLWNATKAFDDLETDDFTAATGHVHLHDNSQELLL
GAYTSKSTPVIHLHFTRRNLLLAAGGYNP
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtacaaggtggtcaggtcgacgcggttgaagaaaaagacattaaaacagaa
ccatcaaacgatggcggtggaaataataatgcaaatgatggaaggctgctttctacgtcc
cctggctctagttcttcgactggaagtattaaatcagcggcaggacccccggaggaccag
cagacgctgctggcggtcctgcagttcctccgaaagaacaaactgactgagtccgtcgaa
atattgcgtcgtgaagccggattaccggaggattcactggaactgaaggggggtgaatcc
tccggttcaggttctggtgctgctgcgggcagtgtggaactagcaggcggggatgcgagc
tctcttctcagccgagtgaccagctcagcctccgctgtagctccggcgccaactaaagct
gctggggaggatcagccggacgtcaatgtggtgctgtcggcctacagccagcagggagac
ccccccctgtaccaggtttactacagcggcctgaagaagttcattgaatcggttctggac
tgtcaccgagcggagctgtcccaggtcttctacccgctgttcgtgcacatgtatctggaa
ctggtgtacaacaaccatgaaagtgaggccaaggcgttctttgaaaagttcagtggggat
caggagtgttactacgaagacgacctgcgcattctgtccagcctgtccaagagggagcac
atgagaggcaacgagacgctgctggacttccgcaccagcaagttcgtcctgcggatctcc
cgagactcctaccagctgctgaagaggcatctgcaggagcgccagaacaaccagatctgg
aacatcatacaagagcacctctacatcgacatcttcgatggcatgccccgcagcaagagc
cagatcgatgccatgtctggtagcctggcaggggagggcaagcgggaggccaacaaggca
aaggtttactatggactgctgaaggaaccagaaattgagcttccccttgatgatgaggat
gaggaggcagagaatgaggagggcaaacccaagaagaagaaacccaaaaaggacagcatg
ggctccaagagcaagaagcaggatcctaacgcacctgcacagaccaggataccccttcca
gaactaaaggactcagacaagctggacaagatcatgtacatgaaggaggccaccaagagg
atccgcctgggaccagaaatcctgccttccatctgcttctacactttcctcaacgcttac
cagggtctgacagctgttgacttcacagacgactccagcctgatcgcggggggcttcgct
gactccacagtacgggtgtggagcgtcacgcccaagaagctccgcaaggtcaagtctgca
gcagatttgaatctgatcgacaaagagtcggacgacgtgttggagaggatcatggatgag
aagacggccagtgagttgaagatcctgtatggacacagcggcccagtgtacggcatcagc
ttcagcccggacagaaactacttgttgtcgagttctgaagatggtacggtccggctgtgg
agtctccaaacattcacgtgtctggtgggctacaaaggccacaactacccagtgtgggat
acccaattttccccgcatgggtactattttatctccgggggacatgacagagttgcccgt
ctgtgggcgacagatcactaccagcctctacggatcttttctggtcacctagctgacgtc
acttgcacccgcttccaccccaactccaattatgtggccacagggtcatcggatcgcacc
atccgagtgtgggacgtcctgaccggaaactgcgtccgcatcttcaccggtcacaagggt
cctatccattcactggctttctctcccaacgggaagttcctggcttcaggggccactgac
agcagagtgctcctgtgggacatcgggcatgggcttatgattggcgaactgaaaggccac
acagatacagtgtactccctgcgcttcagcagagacggagagatccttgcctccggctca
atggacaacacagttcgtctttggaacgctacaaaagcatttgatgatttagaaacagac
gatttcacggcggctacagggcacgtccatctacacgataactcccaggagcttctgctg
ggcgcctacacgtctaaatccacccccgtcatacaccttcacttcacccgcaggaacctg
ctgctggccgccgggggctacaatccatga
DBGET
integrated database retrieval system
