Notothenia coriiceps (black rockcod): 104948493
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Entry
104948493 CDS
T04920
Name
(RefSeq) protocadherin-20-like
KO
K16498
protocadherin delta 1
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
104948493
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ncc01009
]
104948493
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ncc04515
]
104948493
Protein phosphatases and associated proteins [BR:
ncc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104948493
Cell adhesion molecules [BR:
ncc04515
]
Cadherins
Protocadherins
104948493
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
104948493
NCBI-ProteinID:
XP_010773002
UniProt:
A0A6I9N8Z6
LinkDB
All DBs
Position
Unknown
AA seq
848 aa
AA seq
DB search
MGNGTPINMSWAGLMQILLVVVHLQQIICGSVRFYIPEEQGPGVLVGSLSEHFPPPYQLL
TQKYLRMDKNTGDFYTTEEKMDREALFPEETKTEECIILHNAVVGPSGDLIQFAVIIEDI
NDNAPHFENSEIHLKMSEDVSVGTSFLLDDQALDRDAGYNSELSYQLEDSDGVFSLTIED
GLVIMLVVQTALDRETRDMYKMTLVATDQGPLSATATLIVTVTDVNDNCPSFSPDSPRSA
SIPGDSPKNMLVAQVRATDPDSGSNAAIVYSLSPKVSEQAKHLLSLDSLTGSIRLTQDLQ
SDSFEELLLKVLASGHHCPPAYTQVTVSVLPKANQELAIKIGFIVKHQNETMVLPENQPP
TVLAVLELEGDSRFEGSSIAIEGEVPFTLSPQNGKYLLSTSKALDYEMKREHHIFVVVHA
EGSVITHSRRAISVLVADVNDNAPIFVQSHYKLEVEENNQPGMSLLKVLATDADSGYNGR
VTYSLDKHTSSIFNIDPNTGQLSVSAILDREQQDAHTLTVLAQDSGSPPLESAATVSIQV
LDQNDNAPVVITPHFIFFMPENVKPFAQVGRVRVTDPDEGANGNTELHVVSSSGPFVLDN
TLGTLHTTTDLDYETRDRYELYLLASDHGHPVALTSTARVTIFVEDINDNQPKVVLPSSN
SSCQTVSQTAVTGTIVTKVFAIDADSGLNSEITYTVVMPDPVQKTSPFRVDSMSGNITVA
QQLLQKDLGMHHLFIVVRDGGKPAPLYTTVWVNLLVNESVGPCHLDREPTWSGTADLVQT
PQKTQICEAVDIRSAQLTLLVGLGMILVSICWLVATVVLHLKQRRLHHKNRGHIEENEIP
LRLQDKYY
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgggcaatgggactcctattaatatgagctgggctggactaatgcagattctgctcgtt
gtggtccatctgcagcagataatatgtggttctgtccggttttacatcccagaggaacag
gggccaggtgtcctggtggggtcacttagtgaacactttccacctccgtaccagctactg
acgcagaagtatctgcggatggacaaaaacactggagatttctacaccactgaggaaaag
atggaccgcgaggccctcttccctgaggaaacaaaaactgaggaatgcattattttacac
aacgctgtcgtggggccctcaggtgaccttatacagttcgctgtgatcatagaggacatc
aatgacaacgcgcctcattttgaaaacagtgaaatacacttgaagatgtctgaagacgtg
tctgtagggaccagtttcttattggatgaccaggctctggacagggatgctgggtataac
agtgagctgtcgtatcagcttgaagattctgatggagttttcagtttaacgatagaagac
gggcttgtcatcatgctggttgtgcaaacagctctggatagggagactcgggacatgtat
aagatgacgctggtggccactgaccaaggccctttaagtgctacagcgactttaatagtc
acagtgacagatgttaatgacaactgtccaagctttagccccgacagcccccgcagcgcc
agcatccccggagactccccgaagaacatgctggttgctcaggtcagggctacagaccca
gattcaggctcgaatgctgccattgtgtactccctcagtcccaaagtctcagagcaggcc
aagcatctcttaagccttgacagcctcactgggtccatcagactaacacaggacctccag
agtgacagcttcgaggagctgctgttgaaagtgttagctagcggccaccactgcccccca
gcatacactcaggtaactgtatccgtgctccccaaggccaaccaagagctggcaatcaag
atcgggttcatagtgaagcatcaaaacgagactatggtgttaccagagaaccaacccccc
actgtcttagctgttttagagcttgagggtgacagcagatttgaaggctcatctattgcc
attgagggtgaggtacctttcactctgagcccacagaatggcaaatatctcctttccaca
tcaaaggccctagactatgagatgaaaagagaacatcatatttttgttgtagtgcatgct
gaaggatctgtgatcactcattccaggcgtgcgatcagtgtgttggtggcagatgtcaat
gataatgctccaatttttgtccagtctcactacaagctggaggtggaagaaaacaaccag
ccagggatgtcactgctgaaggtcttggcaaccgacgcagacagtggatacaacggcagg
gtgacctacagtctggacaaacacacatcttccatctttaacattgaccccaatacaggt
cagctgtctgtgtcagccattctggacagggagcagcaggatgcacacacactcactgtg
ttagcacaagatagcggctctcctccattagagtcagcggccacagtatccattcaagtg
ctggatcagaatgacaatgcacccgttgttataacccctcactttatctttttcatgcct
gagaatgtaaaaccgtttgcccaggtggggagggttagggtgacagacccagacgaagga
gcgaatgggaacacagagttgcatgttgtgagcagcagtggaccttttgttttggataac
acccttgggacactgcacaccaccaccgacttagattacgagacgcgcgaccgttatgaa
ctctacctgctggctagcgatcacgggcacccagtcgctttgacttccactgccagggta
actatctttgtggaggatatcaatgacaaccagccaaaagttgtccttccaagcagcaac
tcctcctgccagactgtctctcaaacagccgtgacaggcaccattgtaacaaaggtcttt
gccattgacgcagactcagggctcaattcggagattacttacactgttgtgatgccagac
ccagtgcaaaaaaccagtcccttccgagtagattcaatgtcaggaaacattactgtagcc
cagcaactcctacagaaagacctgggaatgcatcacctgttcattgtggtcagagatggg
gggaagccagctccactttataccactgtctgggttaatctgttggtcaacgagagcgtg
ggcccctgccacttggaccgggagcccacctggtcagggacagctgacttggttcaaacc
ccccaaaagacccaaatctgtgaggcagtggacatcagatctgctcagctgacactgttg
gtaggccttggtatgatactggtgtccatatgttggcttgtggcgacagttgttttacac
ctgaagcagaggagacttcatcataaaaatagggggcacattgaggagaatgagattcca
ctcaggcttcaagacaaatattactaa
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