Notothenia coriiceps (black rockcod): 104948617
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Entry
104948617 CDS
T04920
Symbol
dhx15
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104948617 (dhx15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncc03041
]
104948617 (dhx15)
03009 Ribosome biogenesis [BR:
ncc03009
]
104948617 (dhx15)
Enzymes [BR:
ncc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104948617 (dhx15)
Spliceosome [BR:
ncc03041
]
Complex A
U2 snRNP components
U2 related factors
104948617 (dhx15)
Complex B
104948617 (dhx15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
104948617 (dhx15)
Ribosome biogenesis [BR:
ncc03009
]
Eukaryotic type
90S particles
Helicases
104948617 (dhx15)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
SRP54
Flavi_DEAD
DUF5549
nSTAND3
AAA_29
AAA_7
Motif
Other DBs
NCBI-GeneID:
104948617
NCBI-ProteinID:
XP_010773123
UniProt:
A0A6I9NCS5
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MSKRHRLDLGDDYSSTKKRSEGRDRDRDRDREDRSRDRDRDRDRDRDRDRDSKPSTGPSN
ITVPMPCLAPIKQMAMQQQINPFTNLPHTPRFYEILKKRLQLPVWEYKENFSDIITRHQS
FVLVGETGSGKTTQIPQWCVDMVKGQPGPKRAVACTQPRRVAAMSVAQRVADEMDIMLGQ
EVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGV
LKEVVRQRGDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAA
IRTVIQIHMCEEEEGDALLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQ
QQQRIFEAAPLRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVES
LLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLK
KLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMV
IASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAFK
QNHEANQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYTNIRRALCT
GFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCSDIKP
EWLVKIAPQYYEMGNFPQCEAKRQLERIIAKLDSKEYSQY
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaagacatcgccttgatttgggggatgactactcttccaccaagaagaggtct
gaagggagagacagggatcgtgacagagaccgtgaggaccgctccagggacagggaccga
gatagggaccgggatagagaccgggacagagactcaaagccttctactggcccgtctaac
atcacagtgcccatgccctgcttggcacccatcaagcagatggctatgcaacagcagatc
aacccattcaccaacctgccgcacactccacgcttctacgagatcctaaagaagcggtta
caacttccagtgtgggagtacaaagaaaacttcagcgatatcatcacacgtcatcagagc
tttgtccttgttggagaaactggctctggaaagacaacacagatcccacagtggtgtgtg
gacatggtgaagggccagcctggacctaagagggctgtagcctgtactcagcccaggaga
gtggcagctatgagtgtggctcaaagagtggcagatgaaatggacatcatgcttggacag
gaagtcggctactctattcgatttgaggactgcagctctgctaagactattctcaagtac
atgacagatggtatgttactgcgagaggccatgaatgacccgctgctggagcgttacggt
gtgatcattctggacgaggcccacgagcgaaccctggccacagatatcctgatgggagta
ctcaaggaggtggtgcgtcaacgaggagatctgaaggtgatcgtcatgagtgccacgctt
gatgccgggaagtttcaggtgtatttcgacaactgtcctctcctcactattcccgggcgt
acacatcctgtagagattttctacactccagaaccagagcgagactacctcgaggcagcg
atccgcactgtcatccagattcatatgtgtgaggaagaagagggagacgccctgctcttt
ctcactggtcaagaggaaatcgatgaggcgtgcaaacggatcaagcgtgaggtagatgac
cttggacctgaagttggagacatcaaaatcattccactgtattccacattaccaccgcag
cagcagcaacggatctttgaggcggctcctctaagaaagcccaatggtgcaataggaaga
aaggttgtggtttctacaaacattgctgagacctctctgacaatagacggtgtggtgttt
gtcattgatcctggatttgcaaagcaaaaggtttacaatccccgtatcagagtagagtct
ttgcttgtcacggccatcagtaaagcttcggcccagcagagggcgggtcgagccggcaga
acccgtccagggaaatgtttccgcctctacacggagaaggcctacaaaactgagatgcag
gataacacataccctgagattcttcgatccaacttgggatctgttgtgctgcagctgaaa
aagctgggaatcgatgaccttgtgcactttgacttcatggaccccccagctccagagacg
ctgatgagggccctcgagctgctgaattacctggcagctctcaatgatgacggcgacctg
acggagctgggctccatgatggccgagttccctttggacccccagctggctaagatggtc
attgccagctgcgagtttaactgctctaacgagatcctttccattactgccatgctgtca
gtcccacagtgttttgtccggcccacggaggctaagaaggcggcagacgagtccaagatg
aggtttgctcacatcgacggagatcacttgacgctgctcaacgtctaccacgccttcaaa
caaaaccacgaggccaaccagtggtgctatgataactttgtcaactaccgctcactgatg
tcagctgacaacgtgcgccagcagctgtccaggatcatggaccgcttcaacctgccgcgc
cggagcacagagttcaccagcagagattattacaccaacatccgcagggcgctctgcacc
ggcttcttcatgcaggtggctcatttggagcgcacaggtcattacctcactgtcaaagac
aaccaagtggtccaactccatccctccacagtcctggaccacaagcccgagtgggtgctc
tataatgaatttgtcctgaccaccaaaaactacattcgcacttgctcagacatcaaacca
gagtggttggtgaagattgcccctcagtactatgaaatgggtaacttcccccaatgtgaa
gctaaaagacagctggagcgaatcattgccaaactagatagcaaggagtattcccagtac
tga
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