KEGG   Notothenia coriiceps (black rockcod): 104948922
Entry
104948922         CDS       T04920                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
ncc  Notothenia coriiceps (black rockcod)
Pathway
ncc03030  DNA replication
ncc03410  Base excision repair
ncc03420  Nucleotide excision repair
ncc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ncc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    104948922 (rfc4)
   03410 Base excision repair
    104948922 (rfc4)
   03420 Nucleotide excision repair
    104948922 (rfc4)
   03430 Mismatch repair
    104948922 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ncc03032]
    104948922 (rfc4)
   03036 Chromosome and associated proteins [BR:ncc03036]
    104948922 (rfc4)
   03400 DNA repair and recombination proteins [BR:ncc03400]
    104948922 (rfc4)
DNA replication proteins [BR:ncc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    104948922 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    104948922 (rfc4)
Chromosome and associated proteins [BR:ncc03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    104948922 (rfc4)
DNA repair and recombination proteins [BR:ncc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     104948922 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    104948922 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C RCF1-5-like_lid AAA_lid_RFC1 DNA_pol3_delta2 AAA AAA_assoc_2 KH_DUF2096_C Gp44_lid Cdc6_lid 7TMR-HDED
Other DBs
NCBI-GeneID: 104948922
NCBI-ProteinID: XP_010773463
UniProt: A0A6I9NDX8
LinkDB
Position
Unknown
AA seq 226 aa
GKPCPPFKIIILDEADSMTGPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKF
RFKPLSNQIQEERLLDICEKESLKYSKESIAALVTVSEGDLRKAITFLQSAARLNMDREI
TESAIIEIAGVVPPKMIDGLLQICLSGTFEKLEVAVRNMVDEGYAATQILGQLHEAVIEH
DLSDKQKSVITDKMAVVSKCLSDGADEYLQMLSLCSVIMQQASQHN
NT seq 682 nt   +upstreamnt  +downstreamnt
tgggaagccgtgtcctcctttcaagatcatcatcctggacgaggcggactccatgacggg
gccggcccaggcggctctgaggcgcaccatggagaaggagtcccgcaccacccgcttctg
cctcatctgcaactacatcagcaggatcatcgagccccttacctccagatgttccaagtt
tcgcttcaaacctctgtccaatcagatccaagaagagcggctgctggatatctgtgagaa
ggagagccttaaatacagcaaagagagtatagcagcgttagtgacggtgtctgaggggga
tctgcggaaagccatcaccttcctgcagagtgcggcacgcctcaacatggacagggagat
cacagagagcgccatcattgaaatagctggggtcgtccctcccaagatgattgacggctt
gctccagatatgcctctcaggaacttttgagaaactagaggtcgcagtcaggaacatggt
ggatgaaggctacgcagccacacagatcctgggtcagctccatgaggctgtcatagagca
cgacctgagtgacaagcagaagtcagtcataacagacaagatggcggttgtgagtaagtg
cctgtcggacggtgcggatgagtacctgcagatgttgagtctctgttcagtcatcatgca
gcaggcctcccagcacaactga

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