Notothenia coriiceps (black rockcod): 104949028 Help Entry 104949028         CDS       T04920                                  Symbol crocc Name (RefSeq) rootletin   KO K16469   rootletin Organism ncc  Notothenia coriiceps (black rockcod) Brite KEGG Orthology (KO) [BR:ncc00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    03037 Cilium and associated proteins [BR:ncc03037]     104949028 (crocc) Cilium and associated proteins [BR:ncc03037]  Primary cilia and associated proteins   Other primary cilia associated proteins    104949028 (crocc) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Rootletin Motif Other DBs NCBI-GeneID:  104949028 NCBI-ProteinID:  XP_010773608 UniProt:  A0A6I9NED0 LinkDB All DBs Position Unknown AA seq 2012 aa AA seqDB search MSAAENADTDSNKLESVIQRLEESVLSEEKKLTVRGPSPDGPPTCLPARVREIVTKNLNE NSAGAMSSVMSLQEENRVLQGELGRLEDLLAHSRADRDELAIKYGAISERLEQALRFETG DNDHDSPDSRSLAQQNVDLRRRLDEEQAAYKRKLTAYQEGQQRQAQLVQKLQAKVLQYKK RCGDLEQMVQERSSELEKHRSHSESSNGRHQDDSSSSLEDALIRLEEEQQRSSSLSAVNA MLREQLEQAGLANEALSHDIRRLTADWTKAREELDQKESDWRREEESFHSYFSTEHSRLL TLWRQVVGFRRHVCELKSATERDLSDMRNEMSRASHSAQVSCAGLSSTLNTREGGAALNL EREKALRVQLEQQLRERVSEMMNLQTRTDTERSELNIRLSESVREGERLKGQIEERDREI VVHMRRLEEQSGNDETDMHVMRAHTATLTDTLRDIAQTVLSDGESSSEADQDNSGAPLLA LVRGFSPHRSSSPRRSSSPSRPSSLAPLSEAGLSALCSAVANKTLQLQDVRGRLLSAQSS VHQLRKQLSETDLAKKDGEQRNQALQRERDAAQRERETTQREKERLKQERDTLASEKVSL EKTVQTAQSSNQILQMECEKLQLSEASTQRERDHEREEKEAATQERERAKAETQRIQKQL DQSESRASAQRGKLSAVSESQQQVEVERQLLQQEKAQLSEALARAEGSNAELSLLMNKLQ SEDAALRDSLAKMASMNEGLAQDKTDLNRYILKLEEEKALLQAQKREAEQEKLTIRDELV RLEQDRMELDSARIMLHQSLQEAELSRGGMEAELQTLRTERFKLQEKVTQLCGEVTSLGS ELSLARGEGERNEVALEEVGRGRAELTRDKAALVVQLTASERENTVLSEELAAFRSERES LETSLFEVQQQLLQVESRREQLETENQNLRVRCETAAADLKRVRSDGENMSVQAEREKQA LKQTLHAAQLEAQQALRKAISEHQEESERLVSEKEVVRQSLLKEQEGALRRLRQETEEQL HRAEREREELQGELRSLQHDRDQSLLQAESEKQQALSLKEAEKSVLSERTSSLQAELSVA GLEVERMSREASLSKEQDQIRVGALTSELLEIRSQLEDAASVHERELQSLRETCADLQSR TDVAFKELDQCRASLAASQESRDQLRRDLLDSERRFNQTQDAAEIIRRDGTEFRRSLTDV TKERDTLGQSNTHLREALRSAETERISVKRQCEEKEQRVAVLEGNLSSTQKEVTELRSCL REVERSRLEARRELQELRRQLKVLDAEKEERGREVAELQTRLSLEEQREEERGKEVFIHK QKLTEAETARDSLKKELSLTHKRLLESESGWRGCERELTAQLQEARGCEKKLQDEAKNLA LRAAAAQDSAAQSSLQLSEAQGRLAGTEAELTRAEASRRDLEYRLSSLQSALTRTLTRTL EPEGGSATSPGTMSRHHSISPLRSSLTPPKEFRGSTPDNTLSSVSPERGNTPLPGPQHEL DPDTLRSDLRDFLLELREAQRERDDAQCQLGAVQRELEELRLDRDSALGRLTHLQNTCQE HQEGKRGLDEHLTTTQILLQQQEEAVRRGDRERRALSDRVKDLERALQASEQDKKHTQDQ LNKQRAAEMRLEAERRRLREALEAAEARATRVELARRGLEGELQRLKLSVGDREADSQAA LQHHEALLKQVAEGEARVSLLQREVERLSQALLKAQEGESLLKETTSSLKKTLLEASSSH SSTQSRLNALQKTLSVAEQDKRLLQERMDEARAALSEGKRNVIILTERVQSLQSELEQSK LRREEAEAELNNTQKALCQRSVGVAEAQRGAQSAQTERAAVEERLRGLQRAVAMLETEKK DAERQAVRLEKDKDALRNTLDKVERQKLKTEEGSMRLSAEKSRLDRSLNTTEQELQDAQQ QILMLQTQLAETEQSQNLCESFARQRDEAQREAERLRTSFRDVERTLGTRERAHRHRVKG LEEQVSTLKEQLQQEMKRRQTSLPPSLLSAGK NT seq 6039 nt NT seq  +upstreamnt  +downstreamnt atgagcgctgcggaaaacgcagacaccgactccaacaaactggagtctgtgatacagagg ctggaggagagtgtgttgtctgaggagaagaagctgacggtccggggcccttcaccagac ggcccccccacatgtctgccagcaagagtacgagagattgtcacaaagaacctcaacgag aactcagccggggccatgtcctccgtcatgtcgctgcaggaggagaaccgggtgctgcag ggcgagctgggccggctagaggacctgctggctcacagccgagccgaccgggacgagctc gccatcaagtacggtgcaatcagtgagaggctggagcaggcgctgcgtttcgagacagga gacaacgaccacgattcgccggactctcgcagcctggcgcagcagaatgtggacttgcgg cggcggctggacgaggagcaggcggcctacaagcgtaaactcactgcgtaccaggagggt cagcagaggcaggcacagctcgtgcagaagttgcaggccaaggtactgcagtacaaaaag agatgtggggatctggagcagatggtgcaggagcgctcgtcagagttggagaaacacagg agccacagtgaatcctcaaatggtcggcatcaagacgactcaagcagcagcctggaggat gctttaatccgtctggaggaagaacagcagaggagcagcagtttgtctgcggtgaatgcc atgctgagagagcagctggagcaggctgggttggccaacgaggctctcagccacgacatc cgcaggcttactgctgattggacgaaagccagggaggaactggaccagaaggagtctgac tggaggagggaagaagagtctttccacagttatttcagtactgagcacagtcgactgctg acgctgtggaggcaagtggtcgggtttcggaggcatgtctgtgaactgaagagcgccaca gaaagggacttgtcagacatgcgtaacgagatgtctcgggcgtcccactctgctcaggtg tcttgtgcaggtctgtcttccaccctgaacacacgggaggggggagcagcgctgaacctg gagagagagaaagctctgcgggttcagctggagcagcagctgagagaacgagtgtccgag atgatgaatctccagaccaggacagacacagagaggagtgagctcaacatcaggttatca gagtcagtgcgagagggggagagactaaagggacaaattgaagagagagacagagaaatt gttgtacatatgaggaggcttgaggaacagagtggtaacgatgagactgacatgcatgtg atgagagctcacactgcgacgctgacagacaccctgcgagacatcgctcagacggtgttg tctgatggagagtcgtcatcagaggcggaccaggacaactctggagctccactgctagcg ttggtgcggggcttctccccccaccgctcctcctctccccgcaggtcgtcctccccctct cgaccttcctctctggctcccctttctgaggcggggctgtcagctctgtgctctgcagtc gcaaacaagacactccagctgcaggatgttcgagggcgcctgctctctgctcagtcttcg gttcatcagttgcgcaagcagctttctgagactgatctggcaaaaaaagatggcgaacag cgcaaccaagctctgcagagagagagggatgctgctcagagagagagggagaccacacag agagagaaggagcgtctgaagcaggagagggacacgctggccagtgagaaggtgagcctg gagaagacggtgcagacggcacagagcagcaaccagatcctgcagatggagtgtgagaag ctccagctgagcgaggcgtccacacagcgagagagagatcatgagagggaggagaaggag gccgccacgcaggagagagagcgggccaaggccgagactcagaggatacaaaagcagttg gatcagagtgagagtcgggcctccgctcagcgtgggaagctgtctgcagtgagcgagtct caacagcaggtggaggttgagcggcagctgctgcagcaagagaaagcccaactgtctgaa gcactggctcgggctgagggcagtaacgcagagctctccctgctgatgaacaagctgcag tctgaggacgcagctctcagagactctctggccaagatggcaagcatgaacgagggactg gctcaggacaaaactgacttaaacagatacattctcaagctggaggaagagaaggctctg ctgcaggctcagaaacgggaggcggagcaggagaagttgaccatcagagatgaactggtc cggttggagcaggaccggatggagctggactccgcccgcatcatgctgcatcaatcactg caggaggcagagctgagccggggggggatggaggcagagctccagactctcaggactgag agatttaagctgcaggagaaagttacccagctttgtggcgaggtgacctctctgggatca gagctgagtctggccagaggcgagggcgagaggaacgaggtggctttagaggaggtgggc cgcgggcgggcagaactgacccgagacaaagctgcactggtggtccagctgacggcgtcc gagagagaaaacacggtgctgtcagaggagctggctgctttcaggtcggagcgtgagtcc ctggaaaccagcctgttcgaggtgcagcagcagctccttcaggtggagtctcgcagagag cagctggagacagagaaccaaaaccttcgagttcgctgtgagaccgcagcagctgacctg aagcgtgtgcgctccgatggggagaatatgtcggttcaggctgagcgggagaaacaggct ctgaagcagaccctacatgctgcacagctggaggcccagcaggctttacgcaaggccatc tctgaacaccaggaggagtcggagagactggtctcagaaaaggaagtggtgcggcagagc ctgctgaaggagcaggagggtgctctgaggaggctcagacaggagacggaggagcagctc cacagagcagagagagaaagagaggagctgcagggagagctgaggagtctgcagcacgac cgagatcagagcctgctgcaggcagagagcgagaaacagcaggccctttctctgaaggag gcagagaaaagtgtgttgtctgagaggacgtcctccctgcaggcggagctgtcagtggca ggcctggaggtcgagcggatgtcaagagaagcctctctttccaaagagcaggaccagatt agagtcggggctctcaccagcgagctgctggagattcgctctcagctggaagacgcagct tctgttcatgaaagggaactccagagtctgagggagacttgtgctgaccttcagtctcgc actgatgtggctttcaaagagctggaccagtgcagagcttctctcgcagctagccaggag agtcgagaccagctgaggcgggacctgttggacagcgagcggcgtttcaaccaaactcag gacgctgcagagatcatcagaagagacgggacggagttccggcgcagcctcactgacgtc accaaggagagagacacactcggccagtccaatactcatctgagagaagctctacgaagt gcagaaacagagaggatcagtgtgaaacgccagtgtgaggagaaggagcagagggtggct gtgctggagggaaacctgtcctccactcagaaggaggtgacggagctgcgcagctgcctg agggaagtcgaaaggtcacgacttgaagctcggcgagaactccaggagctccgcagacag ctgaaggttctggatgcagagaaggaggagagagggagggaggtggccgagctgcagact cgcctgtcgctggaggagcaaagagaggaggagagagggaaagaagtttttatccacaaa cagaagttaactgaagctgaaacagctcgagactccctcaagaaagagctctccttgact cataagcgtctgctggagtctgagtcaggatggcgaggctgtgagagagagctgacggct cagctgcaggaggcgcgaggctgcgagaagaagctgcaggatgaagccaagaacctggcc ctgcgcgctgcggcggctcaggactctgcggctcagagcagcctgcagctgagcgaggct cagggccgactggccggcaccgaggccgagctgacccgggccgaggcctccaggagggac ttggagtatcgtctgagcagccttcagtcggcgctgacgcggacgctgacgcggacgctg gagcccgagggggggagcgccacatcaccaggcactatgtcgcgccaccacagcatctca cctctcaggtcgtcactgacgcctccgaaagagtttcgaggaagcactcctgacaacacc ttgagctcagtgtctccggagagagggaacacaccgctgcctggtcctcagcatgagctg gaccccgacacactgcgaagtgatttgagggacttcctgctggagctgcgtgaggctcag agagagagggatgacgctcagtgccagctgggggccgtgcagcgggagctggaggagctg aggctggatcgagactctgctctgggtcgtctcactcacctgcaaaacacctgtcaggaa caccaagaagggaagcgtggactggacgagcatctgaccaccactcagattttgctgcag cagcaggaggaggcggtgaggagaggggacagagagaggagagctctcagcgacagagtg aaggatttagagcgagcgctgcaggcctctgagcaggataaaaaacatacgcaggatcag ttgaataagcagcgtgcggctgagatgcgtctggaggccgagaggcgtcgtctgcgtgag gcgctggaggcagccgaggcccgagccaccagggtggagctggcgaggcgaggcctggag ggggagctgcagagactcaaactgagtgtgggggaccgggaggcggacagccaggccgcc ttgcagcaccatgaggctctcctgaaacaggtggcagaaggagaagcccgtgtgtctctg ctgcagagagaggtggagaggctgagccaggctctgctcaaagctcaggaaggagagtct ttactcaaagagacgacctcttccctcaaaaagaccctcctggaggcttcatcttctcac agcagcacacagagtcgcctgaacgctctgcagaagacgctgagcgtggctgagcaggac aaaaggcttctacaggagcggatggatgaagcccgggcggcactatcggagggcaaaagg aacgtgatcatcctcactgagcgtgtgcaaagtttgcagagtgagctggaacagagcaag ctgaggcgagaagaagcggaggccgagctcaacaacactcaaaaggctctttgtcagcgc tctgtcggtgtggcagaggctcagcgcggcgcccagtcggctcagacagagcgggccgca gtggaggagcggctgcgtgggctgcagcgagccgtggccatgctcgagaccgagaaaaaa gatgcagagagacaagctgtgaggctggagaaagacaaggacgcactgaggaacacactg gataaggttgagcgtcagaagctgaagactgaggaaggcagcatgcggctctctgcggag aaaagccgcttggaccgctctctgaacaccactgagcaggagctgcaggacgcacagcaa cagatcctgatgctgcagactcagctggctgagacggagcagtcacagaatctgtgtgag agttttgcgaggcagcgggacgaggcccagcgggaggcggagagactcaggacgagcttc agggacgtggagcgcacgctgggcaccagagagcgagctcaccgacacagagtgaagggt ctggaggagcaggtgtccaccttaaaggagcagctgcagcaggagatgaaacggcgacaa acttctcttcctccctccttattgtcggcaggaaagtga

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