Notothenia coriiceps (black rockcod): 104949253
Help
Entry
104949253 CDS
T04920
Symbol
srf
Name
(RefSeq) serum response factor isoform X1
KO
K04378
serum response factor
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04010
MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
104949253 (srf)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncc03000
]
104949253 (srf)
Transcription factors [BR:
ncc03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box responders to external signals
104949253 (srf)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SRF-TF
Motif
Other DBs
NCBI-GeneID:
104949253
NCBI-ProteinID:
XP_010773877
UniProt:
A0A6I9NBE3
LinkDB
All DBs
Position
Unknown
AA seq
581 aa
AA seq
DB search
MLPSRVGSAPSGNGSATGRGNTGHGSGVVGSGIRPVLVRAGQALAVVESIGRQGERDAVG
MLGANGPGGSRGVRPGNGTGVTTLQPAVQGNMVGLNQGGMPHGARFEERDVAPLCSGSDN
DSDSGDDDDPVGSLGDSRRGVKRERGEMEAAVSGQDVGMPPGGYGMVPGGVAGAKPGKKT
RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR
KLQPMITSETGKALIQTCLNSPDSPPRSDPSTDQRMSATGFEETDLTYQVSESESMGDTK
DTLKPTFTVASLPGSAQCTVPTTSTTMQVSSGPSFPITNYLAPVSASSNISANGTVLKTT
SSGVMQLPSGFTFMPAGTPLPPGTPTIPLSQLQQHSLALQGQHGQASQHQQGQQAVFRFP
AAVSLSGAGLPQQLQAIQVHHNTTSNSDGSLDISHTSSNSTATVSLPATIVTSSMPTSVA
GHMMYPSPHTVMYASAPTLSDGSLAVLNAFSHGTSAMQVHGQGQDSGVPQVFLTAPQGTV
QIPVSAVQLHPMVIGQQSSGSSSNLTELQLVNLDAVQNSKD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgttaccgagccgggttggatcggcaccatctggaaacggctcagctactggcagggga
aacacgggacacggttcgggggttgtcggaagcgggattcgtcccgttttggttagagca
gggcaagctttagcagtggtcgagagtatcgggagacagggggagagagacgccgtcggg
atgctaggggctaatgggccagggggttcgagaggtgtgagacccgggaacgggaccggg
gtgaccaccctgcagccagccgtgcagggcaacatggtggggctaaaccagggaggtatg
cctcacggagccaggttcgaggagagagatgtcgctcctctgtgcagcggctcggataat
gactcggactccggagacgatgatgacccagtgggttcactcggggacagcaggagaggg
gtgaagcgggagagaggagagatggaggctgcagtgtcggggcaggacgtaggcatgcct
cccgggggttacggaatggtgcccggcggggtcgcaggggcaaagccggggaagaaaaca
cgtgggcgagtgaagataaaaatggaatttattgacaacaagttaagacgttacaccacc
ttcagcaagaggaagaccggtataatgaaaaaggcgtatgaactctccaccttgacggga
acccaggtactgctgctcgtggccagtgaaacgggtcatgtctacacttttgcaacgcgc
aaactccaacccatgatcacgagtgaaacgggcaaagctctgatccaaacgtgcctcaac
tcaccggactcgccgccacgctccgacccctccacggaccagcgcatgagcgcgacgggc
ttcgaggagacggatctcacctatcaggtgtctgagtcggagagcatgggcgacacaaag
gacacactgaagcccacgttcacggtggccagcctgccgggcagcgcccagtgcacggta
cccaccacctccaccaccatgcaggtgagcagcgggccctcgttccccatcaccaactac
ctggcgcccgtctcggccagcagcaacatcagcgccaacggcaccgtcctgaagaccacc
agctcgggggtcatgcagctgcccagcggcttcaccttcatgcccgcaggcactcctctc
ccccccggcacccccaccattcctctgagccagctgcagcagcactccctggccctgcag
gggcagcatgggcaggcctcccagcaccagcagggacagcaggctgtcttccgcttccct
gctgctgtctccctctcaggagcaggcctcccccagcagctccaggccatccaggtacac
cacaacaccacctccaacagcgacggcagcctcgacatctcccacacctcctcaaactcc
accgcgacggttagtctcccagcaaccatcgtcacctcgtctatgccaacatctgttgcg
ggtcacatgatgtaccccagcccgcacacagtgatgtacgcctcggcgcccacgctgtcc
gacgggagtctcgctgtgctcaacgccttctcgcacggcacctcggccatgcaggtccac
ggacagggccaggactcaggtgtcccgcaggtgttcctcacagcaccccaaggcacggtg
cagatccctgtctcagcggtgcagctacacccaatggtgattggtcaacagtcgagcggc
agcagcagtaacctgactgagctccagctggtcaacttggacgcagtacagaactcaaag
gactga
DBGET
integrated database retrieval system