Notothenia coriiceps (black rockcod): 104949277
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Entry
104949277 CDS
T04920
Name
(RefSeq) LOW QUALITY PROTEIN: apoptotic chromatin condensation inducer in the nucleus-like
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03013
Nucleocytoplasmic transport
ncc03015
mRNA surveillance pathway
ncc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104949277
09122 Translation
03013 Nucleocytoplasmic transport
104949277
03015 mRNA surveillance pathway
104949277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncc03019
]
104949277
03041 Spliceosome [BR:
ncc03041
]
104949277
Messenger RNA biogenesis [BR:
ncc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104949277
Spliceosome [BR:
ncc03041
]
Complex C
Other components
EJC/TREX
104949277
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSB_motif
RRM_1
Motif
Other DBs
NCBI-GeneID:
104949277
NCBI-ProteinID:
XP_010773917
UniProt:
A0A6I9NBI6
LinkDB
All DBs
Position
Unknown
AA seq
600 aa
AA seq
DB search
MLSEGNKNGEVSEPSAAAVTEVQPDPESSMTQQPPSGAEAESSEGHLEEGTNQKAFAARK
ISLTSSKTSPPATDGGAGDCESGTAAGRKRRWGSSSAVTTKKPSISITTDSLKSLIPDIR
VKEEAVVELHPEELQMSGDEESPDPSAGDQDKGLKIRRTVTQVVPGDAQENGQTNEEEEE
XEEEVVEKTEKEKQRRTSRDKRNNSVSEEAMETQISVKIEGDEKKVTPSDSLVRRSISQQ
KSGVSVTIDDPVRTTRQPSPPQGKVSTIIHVTNLVRPFTLGQLKELLNRTGSVLEDCFWI
DKIKSHCFVTYGTTEEAVATRAALHGVKWPSSNPKVLNVDFCEQDEMDIHKGILKPVREK
PHAVAPQSAPPSRLPPLMPERDHEREQNPEWDRGMGGVRQLWVERQREMERRERARGERE
WDRDKVREFARPGEDRPRSRSRERRRRERAKSKERKTEKKGDEPPAKLLDDLFLKTKAAP
CIYWLPLSEEQAAHRTQERTERQKERVQRRKERQEELEKKAEEERERLKERLKAREKDGA
AAAPSVGAAGRGAERERERGRDREPDRKRDGSNRPPPRPSVGAGAGRRSRSRSNPRDRRR
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgctgtccgaaggcaacaaaaacggggaggtgtcggagcccagcgcggccgccgtgacg
gaggtgcagccggaccccgagagctccatgactcagcagccgccctccggggccgaggcg
gagagcagcgagggccacctggaggagggcaccaatcagaaggccttcgctgcccgtaag
atatccctgaccagcagcaagacgtctccacccgccacagatggaggagcaggcgactgt
gagtcggggacggcagcggggaggaagaggcgatggggctccagctcggccgtcaccacc
aagaaaccatccatcagcatcaccaccgactctctgaagtcgttgatccctgacatcaga
gtgaaggaggaggcggtggtggagctgcacccagaggagctgcagatgtccggggacgag
gagagcccggaccccagcgcgggggaccaggacaagggcctcaagatcagacgcaccgtc
acacaggtcgtcccaggagacgctcaggaaaacggacagacaaacgaggaggaggaggag
naggaggaggaggtggtggagaaaacggagaaagagaaacagcgcaggacttccagagac
aaaaggaataacagcgtttctgaggaagccatggaaacccagatatctgtcaagattgaa
ggagacgaaaagaaagtgacccctagtgacagcctggtgcgtcgctccatcagtcaacag
aagtccggcgtttccgtcaccattgacgaccccgtccgcacgaccaggcaaccctcaccg
cctcagggcaaagtctcaacaatcatccatgtgaccaacctggtgcgacccttcaccctg
ggccaactcaaagagctgctgaacaggacgggcagcgtgctggaagactgcttctggatc
gacaagatcaagtctcactgcttcgtcacatacggtaccacagaggaggcggtcgccacc
agagccgccctccacggggtcaaatggccttccagcaatcccaaggtcctcaacgtcgac
ttctgtgagcaggatgagatggacattcacaaaggcatcctgaagccagtgagggagaag
ccccacgctgtcgccccccaaagtgctcccccgagccggctgccccccctgatgcctgag
cgagaccatgagcgggaacagaacccagagtgggaccggggcatggggggagtgcggcag
ctgtgggtggagcggcagagagagatggagcgccgggaacgagcccgtggcgagcgggaa
tgggaccgggataaggtccgggagttcgcccggccgggagaggacagaccccgctctcga
tccagagagaggaggaggagggagagggccaagagcaaggagaggaagacggagaagaag
ggagacgagcctcctgcaaagctgctggacgacttgttcctgaagaccaaagcagcgccg
tgtatctactggcttcccctctctgaggagcaggcggcgcacaggactcaggagcgcacc
gagcggcaaaaggagcgcgtacaaaggcgcaaggagcgacaggaggagctggagaagaag
gcggaggaggagagggagcggctgaaggagcggctgaaggctcgggagaaagatggcgcg
gcggcggcgccgagcgtcggagcggccgggcgaggagcagagagagagagggagcgcggc
cgagacagggagcccgacaggaagcgggacggcagcaaccgaccccccccacgaccctct
gtaggcgccggggcaggacgccgctcccgtagccgtagcaaccccagggatagacgccgc
tga
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