Notothenia coriiceps (black rockcod): 104949478 Help Entry 104949478         CDS       T04920                                  Name (RefSeq) clathrin heavy chain 1   KO K04646   clathrin heavy chain Organism ncc  Notothenia coriiceps (black rockcod) Pathway ncc04142   Lysosome ncc04144   Endocytosis ncc05100   Bacterial invasion of epithelial cells Brite KEGG Orthology (KO) [BR:ncc00001]  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     104949478    04142 Lysosome     104949478  09160 Human Diseases   09171 Infectious disease: bacterial    05100 Bacterial invasion of epithelial cells     104949478  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:ncc04131]     104949478   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:ncc04147]     104949478 Membrane trafficking [BR:ncc04131]  Endocytosis   Clathrin-mediated endocytosis    Clathrin     104949478 Exosome [BR:ncc04147]  Exosomal proteins   Proteins found in most exosomes    104949478 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Clathrin Clathrin_propel Clathrin_H_link Clathrin-link TPR_COPA_B TPR_Vps41 Motif Other DBs NCBI-GeneID:  104949478 NCBI-ProteinID:  XP_010774135 UniProt:  A0A6I9NI34 LinkDB All DBs Position Unknown AA seq 1679 aa AA seqDB search MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQSQVVIIDMADPNT PIRRPISADSAIMNPASKVIALKDASKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV ALVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG AMQLYSVDRKVSQPIEGHAASFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTG NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRLAVRNNLAG GEELFARKFNNLFAAGTYSEAAKVAANAPKGILRTPDTIRRFQGVPTQPGQTSPLLQYFG ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKAVDPTLALSVY LRANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRINPEQGLQFAQMLVQD EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAI LGNQMFTNYDRPHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNYFGSLS VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLTTQSLTELFESFKSFEGLFYFLGSIV NFSQDAEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVVGGLLDVDCSEDVIKSLILVVRGQ FSTDELVAEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNNPERFLRENPF YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPDLWASV LLETNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS EHRNLQNLLILTAIKADRTRVMEYISRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNT SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKDLVKEAIDSYIKADDPSAYME VVQAADKSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTE LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAIITMM NHPTDAWKEGQFKDIITKVANVELYYKATQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFF SKVKQLPLVKPYMRSVQSHNNKSVNEALNNLFITEEDYLALRTSIDAYDNFDNISLAQRL EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDVELAEELLSWFLQ EDKKECFAACLFSCYDLLRPDVVMETAWRHNLMDFSMPYFIQVMREYLSKVDKLETSETV RKEEEQATETQPIVYGTPQLMLTAGPTVPVAPQQPYGYGYQAPAGFAPPAAQPGFGYGM NT seq 5040 nt NT seq  +upstreamnt  +downstreamnt atggctcagatactgcctattcgctttcaggagcacctgcagctccaaaatttagggatc aatccggccaacataggcttcagcaccctgaccatggagtcggataagttcatctgtatc cgggagaaagtgggcgagcagtctcaggtggtgatcatcgacatggcagaccccaatacc cccatccgcaggcccatctccgccgacagcgccattatgaatccagccagcaaagtcatt gcacttaaagacgcctccaaaacccttcagatcttcaacatcgagatgaagagcaagatg aaggcgcacaccatgacggacgatgttaccttctggaagtggatctcccttaacacagtc gcacttgtgactgataatgccgtctaccactggagcatggagggcgactcgcagcctgtg aaagtcttcgaccgccactccagcctggcaggctgtcagatcatcaactaccgcacggac gccaagcagaaatggctcctgctcatcggcatctcagcccagcaaaatcgggttgttgga gccatgcagctctactccgttgacagaaaggtttcccagcccatcgaaggccatgctgcc agctttgcccagttcaagatggaggggaacacagaggagtcaactttgttctgcttcgct gtccgaggccaggctggaggaaagttgcacatcattgaagtggggaccccaccaactggc aaccagccatttccaaagaaagcagtggatgtgttcttccctccagaagcccagaacgac ttccctgtggccatgcagataagctccaagcaagatgtggttttcctcattaccaaatat ggctacattcacttgtatgacttggagacgggtacctgcatctacatgaaccgcatcagc ggggagaccatctttgtgactgctccacacgaggccaccgcaggaatcatcggggtcaac aggaagggacaggtgctctcagtgtgtgtggaagaggaaaacatcatcccctacatcact aacgtgcttcagaatccagatctggctctccgcttggctgtccgcaacaacctcgctggt ggagaagagctctttgcacgcaagttcaacaacctgtttgctgccggtacctactctgag gctgccaaggttgctgcaaacgcaccaaagggtatcctgcggaccccagacaccatccgt cgctttcagggcgttcccacccagccggggcagacctcccccctgctgcagtacttcggc atcctgttggaccagggccagctcaacaagtttgagtccctggagctctgcaggccggtc ctccagcaggggcgcaagcagctcctggagaagtggctgaaggaagacaagttggaatgc tcggaggagctgggtgacctggtgaaggcagtggatcccacgttggctctcagtgtctac ctgagggccaacgtccccaacaaagtcatccagtgcttcgcagagactggtcagttcccc aagatcgtcctgtacgccaagaaggtgggctacactccagactggatctttctgctcagg aatgtgatgcggatcaacccagaacaaggcctgcagtttgcccagatgctggttcaggat gaggagccgctggccgacatcacacagattgtggatgtcttcatggagtacaacctgatc cagcagtgcacctcgttcctcctggacgctctgaagaacaacagaccctcagaaggaccg ctgcagactcgcctgctggagatgaacctcatgcatgctccacaggttgctgatgctatc ctgggcaaccagatgttcaccaactacgatcgtccacacatcgcccagctgtgtgagaag gctggactccttcaaagagcgctggagcactacaccgacctgtacgacatcaagcgcgcc gtggtgcacacacacctgctcaacccagagtggctggtgaactactttggctccctgtcg gtggaggactctctggagtgcctcagggccatgctgtccgccaacatccgccagaacctg cagatctgtgtgcaggtggcttccaagtaccacgaacagctcaccacacagtcccttact gagctctttgagtccttcaagagctttgaaggtctgttctacttcctgggctctattgtt aacttcagtcaggacgctgaagttcacttcaaatacatccaggccgcctgcaagaccggc cagatcaaagaggtggagaggatctgcagagagagcaactgctacgacccggagcgcgtc aagaacttccttaaggaagccaaactcaccgaccagctgccactcatcatcgtctgtgac cgctttgactttgtccacgacctggtgctctacctgtaccgcaacaacctgcagaagtac atcgagatctatgttcagaaggtgaatcccagccgtctgcctgttgtggtcggtggtctc ctggatgttgactgctcagaggatgtcatcaagagtctgatcctggtcgtcaggggacag ttctctaccgatgaactggttgctgaggtggaaaagaggaacagactgaagctgctgctg ccctggctggagtctcgtatccacgaaggctgcgaggagcccgccacccacaatgccctg gctaagatctacatcgacagcaacaacaaccctgaacgcttcctgagggaaaaccccttc tacgacagccgtgtggtgggaaagtactgcgagaagagagacccccacctggcgtgtgtg gcctacgagagaggacagtgtgaccaggagctgatcaatgtctgcaatgagaactccctg ttcaagagcttgtctcgctacctggtgcgccgcaaagaccctgacctgtgggccagcgtg ctgctggagaccaaccccttcagaagaccactcattgaccaggtggtgcagacagcgctg tcagagacccaggacccagaggaggtgtccgtcacagtcaaggccttcatgaccgcagac ctgcccaacgagctcatcgagctgctggagaagattgtgctggacaactctgtcttcagt gaacacagaaatctgcagaacctgctgatcctaaccgcaatcaaagccgaccgtacccga gtgatggagtacatcagcaggctagacaactatgacgcccccgacatcgctaacatcgcc atcagcaacgagctcttcgaggaagccttcgccatcttcaagaagtttgatgtcaacacc tctgctgtgcaggtgctgatcgaacatattggcaacctggaccgggcctatgagtttgcg gagcgctgcaatgagcctgccgtgtggagccagctggctaaggctcagctccagaaggac ctggttaaagaggccatcgactcctacatcaaagccgacgatccctctgcatacatggag gtggtgcaggctgctgataagagcggaaactgggaggacctggtgaaattcctgcagatg gctcgtaagaaggcccgcgagtcctatgtggagacagagctcatctttgccttggccaag accaaccgcctggcagaactggaggagttcatcaacggacccaacaacgcccacatccaa caggtgggtgaccgctgctacgatgagaaaatgtacgatgccgcgaagcttctctacaac aacgtctccaacttcggtcgtctggcttcgactctggtgcacctcggggagtaccaggcc gctgtggacggcgcccgcaaggccaacagcacccgcacctggaaggaggtgtgcttcgcc tgtgtggacggaaaggagttccgactggcccagatgtgcggtctccacatcgtggtgcac gctgacgagctggaggagctgatcaactactaccaggaccgcgcttactttgaggagctg atcaccatgctggaggccgccctgggcctggagcgcgctcacatggggatgttcacggag ctcgccatcctgtactccaagttcaagccgcagaagatgagggagcatctggagctcttc tggtccagagtgaacatcccgaaggtcctgagagcagcggagcaggcgcacctgtgggcc gagctggtcttcctgtacgacaagtatgaggagtttgacaacgccatcatcaccatgatg aaccaccccacagacgcctggaaggagggccagttcaaagacattatcaccaaggtggcc aacgtggagctgtactacaaagccacacagttctatctggagttcaagcccttgttactg aatgacttgctcatagtgctttcccccagactggaccactcccgtgctgtcaacttcttc agcaaggtgaaacagctgcctctggtcaaaccctacatgcggtcagtacagagccacaac aacaaatcagtcaatgaagcacttaacaacctcttcatcacagaggaggactatctggca ctgaggacatcaatagacgcctacgacaactttgacaacatctccctggcccagcgcctg gagaagcacgagctgatcgagttcagacggatcgctgcgtacctcttcaagggcaacaac cgctggaaacagagtgtggagctgtgcaagaaggacaagctctacaaggacgccatgcag tacgcgtcggagtcgaaggacgtggagctggccgaggagctgctgtcctggttcctgcag gaggacaagaaggagtgtttcgccgcctgcctgttctcctgctacgacctgctgcggccc gacgtggtgatggagaccgcctggaggcacaacctcatggacttctctatgccatacttc atccaggtcatgagggagtacctcagcaaggtagacaaactagaaacctcagagactgta aggaaagaggaggagcaggcaacagagacgcaacccatcgtctacggcacaccccagctg atgctgacggcgggccccaccgtccccgtggctccccagcaaccgtacggctacggctac caggcgcccgcaggcttcgctccgccagctgctcagccaggctttggctacggcatgtaa

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