Notothenia coriiceps (black rockcod): 104950069
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Entry
104950069 CDS
T04920
Symbol
cpsf2
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104950069 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncc03019
]
104950069 (cpsf2)
Messenger RNA biogenesis [BR:
ncc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104950069 (cpsf2)
U7-dependent histone pre-mRNA processing factors
104950069 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
104950069
NCBI-ProteinID:
XP_010774825
UniProt:
A0A6I9NJY7
LinkDB
All DBs
Position
Unknown
AA seq
781 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDETFSMDIIDAMKRYVHQVDAVLL
SHPDPLHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDQFQSRNNSEDFTLFTLDDVD
CAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIIYAVDFNHKR
EIHLNGCVLDSISRPSLLITDSFNARYVQPRRKQRDELLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGAYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLTLCHSLADLARVPSPKVVLCSQPDLEAGFSRELFIQWCQDAKNSVILTYRTT
PGTLARYLIDNPGEKMLDLEVRKRVKLEGKELEEFLEKDKVKKEAAKKLEQAKEVDVDSS
EESDMDDDLDQPVVLKTKHHDLMMKSEGSRKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRLEDFLVPELQATEEEKNKLDSGMTNGDEPMDQDLSIVPTKCVSSIENLEIRSVIPXRG
PNMHLFLVHLVSTCLHLVSILSHFSSCLILSSSCLILSHLSHLVFILSHLVFILSQSCLN
LVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDTGVMLEEGVKEETEEGEMPMEVA
PELDIDQNATAVAAQRAMKSLFGEDEKEVSEESDVIPTLEPLPSNEMPGHQSVFINEPRL
SDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCDDYYKIRELLYQQYAV
V
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccattattaagctgacagcagtgtcaggggtgcaggaggagtctgccctgtgt
tatctgctgcaggtggatgagttccgcttcctcctggactgtggctgggatgagactttc
tcaatggacattatcgatgctatgaaacgatatgttcatcaggttgatgccgtgctcctc
tcccaccctgaccccctacacctgggagccctgccatacgctgtggggaaactaggtcta
aactgcactatatatgccacaatccctgtctacaagatgggtcagatgttcatgtatgat
cagtttcagtctcgaaacaacagtgaagatttcacactgttcaccctggatgatgtggac
tgtgcttttgataaaatccagcagctgaaatactctcagattgtcaatctgaaaggaaaa
gggcacggtctttccatcactcctcttccagctggtcacatgatcggagggactatttgg
aaaatagtgaaggatggagaggaggagattatttatgctgttgacttcaaccacaagaga
gaaattcacctgaacggctgcgtgttggacagcataagtcgtccttctttgcttatcaca
gactccttcaatgctagatatgtacagccgcgtcgcaaacagagagatgagctgcttctt
accaatgtaatggagactcttcgcggtgacggtaatgtcctgatcgccgtggatacagcg
ggccgtgtgttggagctggctcagctgctggaccagatttggagaacaaaggatgccggg
ctgggagcctaccctctcgctctgctcaacaacgtcagctataatgtggtggagttctcc
aagtcccaggtggagtggatgagtgacaaactcatgaggtgttttgaagacaagagaaac
aaccccttccagttccgtcacctgacgctgtgccacagtctggcagacctggcccgggtg
cccagccctaaggtggtgctttgcagccagcctgacctcgaggccggcttctccagagaa
ctcttcatccagtggtgccaagacgccaaaaactctgtcatcctgacctaccgcaccaca
cctggaaccctggcccgctacctcatcgacaaccccggagagaagatgctggatctggag
gtgaggaaaagagtgaagctcgaaggcaaggaactggaagaattcctcgaaaaagacaaa
gtcaagaaagaagcagctaaaaaacttgaacaagctaaagaggtggatgtagactcgagt
gaagagagtgatatggacgacgatctggatcagcccgttgtgttgaaaacgaaacatcac
gacctgatgatgaagagcgagggcagccgcaaaggcagcttcttcaaacaagccaaaaag
tcttatccgatgttccccacacacgaggaaagaatcaaatgggacgagtatggggagatt
atcaggctagaagattttctggttcctgagctgcaagccacagaggaggagaaaaacaaa
ctggattcggggatgaccaacggagacgagcccatggaccaagatctctctattgttccc
accaaatgtgtctccagcatagaaaatctcgaaattaggtcagtgattccttaaaggggc
ccgaacatgcaccttttcctggtncatcttgtctcaacttgtcttcatcttgtctcaatc
ttgtctcacttctcatcttgtctcatcttgtcttcatcttgtctcatcttgtctcacttg
tctcatcttgtcttcatcttgtctcatcttgtcttcatcttgtctcaatcttgtctcaat
cttgttcgattgaaagactccctggtgagctcgctgcagttctgcaaggccaaggacacg
gagctggcgtggatcgatggcgtgctggacatgcgcgtggtgaaggtggacacaggtgtg
atgctggaggagggagtgaaggaggagacggaggaaggcgagatgcccatggaggtcgct
cctgaactggatatcgaccaaaacgcgacggcggtggccgcccagcgcgccatgaagagt
ctgttcggagaggacgagaaggaggtgtccgaggagagcgacgtcatccccacgctggag
ccgctgccttccaatgagatgccaggccatcagtcggtgttcatcaacgagcctcgcctg
tcagacttcaagcaggtcctgctgagagagggcatccaggccgagttcgtgggaggagtg
ctggtctgcaacaacatggtggccgtccgcaggacggaggccgggcgcatcgggctggaa
ggatgcctgtgtgacgactactataagatccgggagctgctgtatcagcagtacgccgtg
gtatag
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