Notothenia coriiceps (black rockcod): 104950248
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Entry
104950248 CDS
T04920
Symbol
hfm1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ncc03036
]
104950248 (hfm1)
Enzymes [BR:
ncc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
104950248 (hfm1)
Chromosome and associated proteins [BR:
ncc03036
]
Eukaryotic type
Meiosis-specific proteins
Others
104950248 (hfm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
ResIII
Motif
Other DBs
NCBI-GeneID:
104950248
NCBI-ProteinID:
XP_010775043
UniProt:
A0A6I9NIT9
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All DBs
Position
Unknown
AA seq
1258 aa
AA seq
DB search
MLDSDDCTLSLDNLFFEKPIVHKVKPLHQEVSPWHLDMPPSLSQVPATQDMQKEAESLSS
LYSFPQIPKPSFKGSAGFKALPAKINSPYNYNIDEKEKDQTQDGRNISTRSDGLWGGEGF
WDYSQDVCHSARSGDETPQEPGHAAISRRCLSLDGSKSPPLRRSLFKVQVWNSGGDSSNK
HDLGNSGSQTSSRPQTFLRPVTMTTAPLPPLHLPGATVRQAAPPFSPNTHFPPPPLVFSA
VSGRPPQQAAHAEAQDKGTKRAFVPPMMPQPLHIQGSSGSGVLRPVSEIPAKFRSVFKEF
PFFNYVQSKALDDVLYTGNNFVACAPTGSGKTVLFELAIIRLLMETSEPWNNVKAVYMAP
IKALCSQCFESWKKKFGPLGLNCKELTGDTEIDDFFEIQDSHIILTTPEKWDSMTRKWKD
NCLLQLVRLFLIDEVHVVKDETRGATLEVVVSRMKAVHAYRTAQNTETGLSMRFVAVSAT
IPNVSDIADWLSDESGPATYLEMDESHRPVKLRKVVLGFPSSPNQSEFKFDLSLNYKMAN
IIQTYSDQKPTLVFCSTRKGVQQAAAVLAKDARFIMSIEHKQRLMKYANSILDSKLRDLV
MFGVGYHHAGVDLCDRKLIEEAFTVSDLPVLCNSTPSSPSLHTHLVEHLNAEIVLQTISD
VNMALDWIRSTLLYIRALKNPTHYGFSADLDRYGIEAKLQELCLKNLNSLSSIDLIHMDE
DINIKPTESGRLMARFCVAFETMKQFSQVSGTESLSDLIEMVSKSREFSDIQLRMNEKRL
LNTLNRDKNRITIRFPIEGKIRSSEMKVNCLIQAQLGSISIQEFGLTQDTVRIFKNGMRI
SKCLTEFLSHRSKTGFSAVLHSLMLAKCFRAKLWENSPYVSKQLEKIGQTLSTAMVNAGL
TTFSKIEQSNPRELELIVNRHPPFGNQIKESVMNLPTYEVTLDQLPRYSCVTAEIVVKVI
LKNQAQLLSRNKAPDQNYVSLIIGNSDNTVVFQQKLTDLALLKSGSWTKKIEVGKASTGD
GISVNLISSQYVGLDIQQKFNVYFSGARKFETDNPHHSLHDPSGQRAHAAPNPLSAKPAA
TQSVSATDQDSGNKRQCNHFCRNKDLCGHECCKVGVTVARKRLSDPESSFSSYLQDLRCR
SDTLGQTPVKRLKMKMGEQAVCANMQEFAYQPRERLPTASWYEGSQYAASVRPHTETVDL
TGEDFTQLPDRVPLDHIDDYDDYVEEAVPTPAVSHTYHHGIVKQLNSSRDRNWWFNMI
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atgttggactccgatgactgcaccttgtccctggacaatctgttttttgagaaacccatt
gtccacaaagtaaagccactgcaccaggaggtcagcccatggcacctggacatgcctccg
tctctttctcaggtcccagccactcaggatatgcagaaggaggcagagtctctctcttct
ctatacagtttcccacaaatacccaagccttcttttaaaggatcagctggcttcaaggct
ttaccagcaaaaatcaacagtccatacaattataacattgatgagaaagagaaggatcaa
actcaggatggcagaaatatcagcaccagaagtgatggcctttggggaggtgaaggcttc
tgggattattctcaggatgtctgccatagcgccagaagtggggatgaaaccccgcaggag
cctggtcatgcagccataagcaggaggtgtttgtctcttgacggcagcaaaagtccacct
ctacggagaagcttgttcaaggtccaggtgtggaacagcggaggtgactcgtcaaacaaa
catgacctcggaaacagcggcagccagacatcatccagacctcaaacttttctcaggccg
gttaccatgacgacagcgcctcttcctcctcttcatctgccaggggcgacagttaggcag
gcggctcctcctttctccccaaacacccacttccctccccctcctctggttttctctgca
gtgagcggccgccccccgcagcaggcggcacacgctgaggcgcaggacaagggcacaaag
agagccttcgttcctcccatgatgcctcagccgcttcacatacaagggtcctctgggtct
ggagttttgagaccagtttctgaaatcccagcaaagttcagatccgtcttcaaagagttc
ccctttttcaactacgttcagtccaaagcattagatgatgttctttacacgggtaacaac
tttgtggcatgtgcccctactggatctggcaaaacggttctgtttgagctggccatcatc
cgtctgttaatggagacctcagagccctggaataacgtcaaagctgtctatatggccccc
atcaaagcgctgtgcagtcagtgctttgagagctggaagaagaagtttgggcctctgggg
ctgaattgtaaggagctgacgggcgacacggagatcgatgacttcttcgagatccaagac
tcccacatcatcctgaccacgcctgaaaagtgggacagcatgaccagaaaatggaaggac
aactgcttgctgcagctggtcaggctcttccttatcgatgaggtgcatgtggtgaaggat
gagacccgcggtgccacgctggaggtagtggtgagcaggatgaaggcggtgcatgcctac
agaacagcacagaatacagagacaggcctctccatgaggtttgtggcggtatcagccacc
atccccaacgtctcggatatcgcagactggttgtcggatgagagcggtccggccacatat
ctggaaatggatgagagccaccgtccagtgaagctgaggaaggtggtgctgggattcccc
tccagtcccaaccaatcagagttcaagttcgacctgtcgctcaactacaagatggccaac
atcatacagacgtactctgaccagaaacccacactcgtgttttgctctacaaggaaagga
gtccagcaggcagctgcagttctggccaaggatgctcggttcattatgagcattgagcac
aagcagaggctgatgaagtatgcaaactctattctggattcaaaactaagagatctggtg
atgtttggagtgggataccaccatgcaggagttgacctgtgtgataggaagttgatagaa
gaggccttcactgtgtcagacctgcccgtcctctgtaacagtacaccctcctcccccagc
ttacacacccacctggtggagcatctgaatgctgaaattgttctccaaaccatcagcgat
gtcaacatggctctggactggatccgctccaccctcctctacatcagagccctcaagaat
cccacacactacggtttttccgccgacttggacagatatgggattgaggcaaaattgcaa
gagctttgtctgaagaacctcaactctctgtcctccatcgacctgatccacatggatgag
gatatcaacatcaaaccaacagagagcggcaggttgatggctcggttctgtgtcgccttt
gaaaccatgaaacagttcagccaagtgtctggcacagagagcctgtccgacctgattgag
atggtgtccaagagcagagagttcagcgacattcagctgagaatgaatgagaagaggctc
ctgaacactctgaacagagacaagaacaggatcaccatcaggtttccaatcgaaggaaag
atcagatccagtgagatgaaagtgaactgcttgattcaggctcagttgggctccatttcg
atccaagagtttggacttacacaggacacagtgaggatcttcaagaatgggatgcgcatc
agcaaatgcctgacagagtttctgagtcaccgatccaagacaggtttctctgctgtgctc
cactccctgatgctggctaagtgcttcagagctaaactgtgggaaaactcgccctacgtc
tccaaacagctggagaagataggccagacactgtcaactgccatggtgaatgctggactc
accactttcagcaaaatagagcaaagcaaccccagagagctggagctgatcgtcaataga
catccaccatttggcaaccaaatcaaagagtctgttatgaatctcccaacgtacgaagtg
actttggaccagcttccaaggtatagctgtgttacggcggagatcgtggtgaaggtgatc
ctaaaaaaccaagcacagctgctgtctaggaacaaggctccagaccagaactatgtctca
ctgattattggaaactctgacaacacggtggtcttccaacagaaactcacggacttggca
ctgctgaagtctggtagctggacgaagaagattgaagtggggaaggcctcaacaggagac
gggatcagcgtcaatctcatcagctcacaatacgtgggcctggacatccaacagaagttt
aacgtctacttttctggagccaggaagtttgaaactgataatccacaccactctctgcat
gacccgagtggacagagagcgcacgctgcaccaaatcctctgtctgcaaaaccggctgca
actcaatctgtttctgctacggaccaagattcaggcaataaaagacagtgcaaccacttc
tgcaggaataaggatctttgtggccacgaatgctgtaaagtaggtgtcactgtggcccgg
aagaggttatccgatccagaatccagtttctcctcctatctgcaagacctgaggtgcagg
agtgacacactcgggcagactcctgtcaaacggctcaagatgaaaatgggcgagcaggct
gtgtgtgccaacatgcaggagtttgcttaccaacccagagagaggctacctactgcttcc
tggtacgaaggaagtcagtatgcagcttcagttagacctcacactgagacggtggatctg
acgggggaagacttcactcagctaccagacagagttccactggaccacattgatgattac
gatgactatgtggaggaggctgtcccgacacctgctgtgtcccacacttaccatcatggt
attgttaaacagcttaactcatcacgagacagaaactggtggtttaacatgatttaa
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