KEGG   Notothenia coriiceps (black rockcod): 104950676
Entry
104950676         CDS       T04920                                 
Symbol
wdr43
Name
(RefSeq) WD repeat-containing protein 43
  KO
K14546  U3 small nucleolar RNA-associated protein 5
Organism
ncc  Notothenia coriiceps (black rockcod)
Pathway
ncc03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:ncc00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    104950676 (wdr43)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ncc03009]
    104950676 (wdr43)
Ribosome biogenesis [BR:ncc03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    104950676 (wdr43)
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 Beta-prop_THOC3 WD40 WD40_WDHD1_1st Beta-prop_EML_2 ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st WD40_Gbeta WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR3_2nd Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_EML Beta-prop_WDR36-Utp21_2nd Beta-prop_SPT8 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR19_1st Beta-prop_Aladin Beta-prop_WDR41 Beta-prop_VPS8 Beta-prop_ACSF4 Beta-prop_DCAF4 Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_HPS5 Beta-prop_SCAP Beta-prop_NUP159_NUP214 WD40_2 Tricorn_2nd Beta-prop_Nup120_160 Beta-prop_RIG_1st PEP5_VPS11_N NBCH_WD40 Beta-prop_IP5PC_F BBS2_GAE AHSA1
Other DBs
NCBI-GeneID: 104950676
NCBI-ProteinID: XP_010775528
UniProt: A0A6I9NKC2
LinkDB
Position
Unknown
AA seq 485 aa
MAADVGSSSLQLPCVFSPKSRQYLALCAQDGRLRIWNTDSKTLHQEYVPSAHLSATCICI
AWGPCRTVKEGPQRKKRKSEAVQEEKADLLAMGTAAGSVLIYSTAKGALHCTLDGGHSGG
VNCVQWHPEDGLLYSGSDDTNIVEWDLQTGKARSKWKADRAAVTSLSVSPDGKLLLSAGQ
IIKMWDLDTKEIYRKFTGHSSAVTTLRFATTRPPDSNGLYFLSGAAHERLLSVWQVRQDG
KDKNSVVSFTLTDEPQHIDLVQSNNKEEAVRLAVVCKDGQLHLFEHFLNGPCKKPLSPSC
SVQMSDTKDSPVPIPLLAAALTADKLSVQLAYGNHLQPVMERVEINTAERHICLTRDVQT
SLSLTMETSVSKVKTPIVNNKSKVLVPGLPGHQAPVKGTSEKRKKDTDTKELPDLVTQLG
VLYHMIESRVKMFHKLTKLHGKLYLLMTQVATSDSSNTVTEVDHTAKLVYEEGECFCCVP
CSLHS
NT seq 1458 nt   +upstreamnt  +downstreamnt
atggcggccgatgtaggtagctcttcgctgcagttaccctgcgtattttcacctaaatca
cgacaatacttagcgttgtgtgcccaggatggcaggcttcgcatttggaacacagatagc
aaaacacttcaccaagaatacgtgccttcagcccatttgagtgccacctgtatctgcata
gcctggggaccatgccggacagtcaaggagggacctcagaggaagaagaggaaatcggag
gcagtgcaggaggagaaggcggatctgttggctatgggcacagcagcaggcagtgttctt
atctacagtacagcaaagggagcactgcactgtacactggatggaggccacagtggggga
gtgaactgtgtccagtggcaccctgaagacggtttattatacagcggctcagatgatact
aacattgtagagtgggacctgcagacgggcaaggcaagaagcaagtggaaggcggaccgt
gcagcagtgaccagtttgagcgtgagccctgatggaaaactgctactgtcagcaggtcag
atcatcaagatgtgggacttggacaccaaggagatctacaggaagttcacaggccactcc
tctgcggtgacgaccctacgttttgccaccacacgacctccagacagcaacggtctctac
ttcctatccggtgctgcacacgaacggctgctcagtgtttggcaagtacggcaagatgga
aaggacaagaactcagtggtttccttcacactgacggacgagccgcaacacatcgacctc
gtccagtccaacaacaaggaagaggcggtgaggctggcagtggtgtgtaaggatgggcag
ctgcatctgtttgagcactttttaaatggtccctgtaagaagccgctgtcgccctcgtgt
tcagttcagatgtctgacacaaaggactcacctgtgccaatcccactgctggctgccgcc
ctgaccgccgacaaactgtccgtgcagctggcctacgggaaccacctgcagccggtgatg
gagagagtggagatcaacaccgcagagagacacatctgtttgacccgggatgttcagacc
agcttgtcccttaccatggagaccagcgtatccaaggtgaagacccctattgtcaacaac
aagagcaaagtgctggtgccagggctccctggccaccaggccccagtcaaaggaacatca
gagaagaggaaaaaagacacagacaccaaagagctgccagacctggttacccagcttgga
gtgctttatcacatgatcgagagcagagtgaagatgttccacaagctgacaaagctgcac
gggaaactctatctcctcatgacacaggtggcgacaagtgacagcagcaacacagtgaca
gaggttgaccacacagctaagctggtgtatgaagaaggtgagtgtttctgttgtgtccct
tgttctcttcactcttga

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