Notothenia coriiceps (black rockcod): 104950678
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Entry
104950678 CDS
T04920
Name
(RefSeq) PDZ and LIM domain protein 5-like isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104950678
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ncc04990
]
104950678
Domain-containing proteins not elsewhere classified [BR:
ncc04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
104950678
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PilX
PDZ_2
Motif
Other DBs
NCBI-GeneID:
104950678
NCBI-ProteinID:
XP_010775529
UniProt:
A0A6I9NCR2
LinkDB
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Position
Unknown
AA seq
620 aa
AA seq
DB search
MSSSYSVSLAGPAPWGFRLQGGKDFCLPLTISRLNDGGKAAKANMTVGDIIMSINGISTD
RMNHLEAQNKIKACTGNLSLTLQRPSSAPQDGVTKEEPQEIIKPVPITHPAPSTAYTKPS
SQPGPAYNKTARPFGGDSSIVVTAPSPAAPSIPSPLSAFKPAAPSQLPQPPFLLKSSQPA
PDSAPANSVTRPSPVRSTFTPPSASSSSSNSSSPARVTAPPSHPNVPQPSVYNTPIHLYS
NTNACEVAVGQRRGLLESQGLSENFNGLPPPTKPRRKVNVEPEDHASQLSDASKKRLMED
TEDWHPRTGTSQSRSFRILAQLTGTENEQAPENGGKNEAVDKSTPAVHTSPAAKTFSKSA
ASPRNGNGVPASTFKSPAAQNKPSFQPGGLPGFPKGGGAPSFGKVTNPTPKGPDRPIPQP
HPQDLNSLVQLAEHIPAGTRTPMCNQCNTVIRGPFLVAMGMSWHPEEFNCAHCRSSLAVG
GFVEEKGQVYCERCYEQFLAPTCGHCQQKILGEVMNALKQTWHVSCFVCAACQQPIRGNT
FHMEDGQPYCEKDYYNLFGSSCHGCDFPIEAGDKFLEALGSTWHDTCFVCAVCSASLEGQ
AFFSKKDKPLCKKHAHTVNI
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcagctacagcgtctcactagctggccccgccccctggggcttcagactgcaa
ggagggaaggacttctgtctccccctcaccatctcacggcttaatgatggaggcaaggca
gctaaagccaacatgacagtcggagacatcatcatgtccattaacggcatttccacggac
cgcatgaatcacctggaggcccagaacaagattaaggcctgcacgggcaatctcagcctc
actctgcagagacccagcagtgcccctcaagatggagtcactaaggaagagcctcaggaa
atcataaaacctgtcccaatcactcaccctgctccaagcacggcatacaccaagccctcc
agtcagcccggccctgcgtacaacaagaccgcccggccttttgggggcgacagcagcatt
gtggtcacagccccctccccggctgccccctccatcccctcaccattatctgctttcaag
ccagctgctccttctcaactgccacagcctccatttctgctgaagtccagccagcctgcc
ccggactcagctccagccaattcggtcaccaggcccagccctgttcgctccaccttcacc
cccccatctgcctcttcctcctcatctaactcctcctctccagccagagtgacagccccc
ccctcccatcctaatgtcccacagccctccgtctataacactccgatccacctctactcc
aataccaatgcatgtgaggtggctgttggacagagacgtggtcttttggagagccagggg
ctgtcagagaacttcaatggacttccacctccaactaaacctaggaggaaggttaatgtg
gagcctgaggaccatgcgtcccagctgagtgatgccagcaagaagcgtctgatggaggac
acggaggactggcacccccgaaccggcacctcccagtcccgctccttccgcatcctggcc
cagctcaccggcactgaaaatgagcaagctccagagaacggtggaaagaatgaggcagtt
gacaaaagcactcccgctgtgcacacctcgcctgcagccaaaacattttccaaatctgca
gcctcacccaggaatggcaacggggtccctgcttccacgttcaagagcccagcagcccag
aacaagccttccttccagcctggaggcctaccaggttttcctaagggtggaggagctcct
tcatttggcaaagtgaccaaccctactcccaaaggtccagaccgccccatccctcagcca
cacccacaggacctcaactctctggtgcagctggccgagcacatcccagccgggacacgc
acccccatgtgcaaccaatgcaacactgtcatcaggggcccattcctcgtggcaatgggc
atgtcatggcacccggaggaattcaactgtgctcactgccgctcctctctggcagtgggg
gggtttgtggaggagaagggccaggtgtactgcgaacgttgctacgagcagttcctcgct
cccacctgtggccactgccaacagaagatcctgggggaagtcatgaatgccctgaaacag
acctggcacgtgtcctgtttcgtctgtgccgcctgccaacagccaatcaggggcaacaca
tttcacatggaggacgggcagccatactgtgaaaaagactactataacctctttgggtca
agctgtcacggatgtgacttccccatcgaggcaggggacaagttcctggaggctctagga
tccacctggcatgacacctgctttgtgtgcgcggtctgctctgctagtctggaaggtcaa
gcgttcttctccaaaaaagacaagcctttgtgcaagaaacacgcccacacagtcaacatc
tga
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