Notothenia coriiceps (black rockcod): 104950823
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Entry
104950823 CDS
T04920
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A-like
KO
K12821
pre-mRNA-processing factor 40
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104950823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncc03041
]
104950823
Spliceosome [BR:
ncc03041
]
Complex A
U1 snRNP components
U1 related factors
104950823
Complex B
104950823
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
DTW
RhoGAP-FF1
Motif
Other DBs
NCBI-GeneID:
104950823
NCBI-ProteinID:
XP_010775704
UniProt:
A0A6I9ND85
LinkDB
All DBs
Position
Unknown
AA seq
660 aa
AA seq
DB search
MMGPPGIPPHYPPLGMPPMGQRPPSMTPMPPGIMPPMGAPPMGQMPGMMPPMMPGMMMPP
RMPSAAVQPTGPPGVDSAAAAPGTASTTNGSPHEDQLKKKSLWTEHKSLDGKTYFYNTET
KQSTWEKPEDLKSPAEQMLSKCPWKEYKSDVGKPYYYNSQTKESRWTKPKDLEDLEAMIK
AEENGTAEAMAPGTTATPADNAAAMATIMEAEAATAVSEELLAQVAMHQTAEVKTSDAPV
APSELSATTELTASVEVIKEERPELQKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQA
MKMIINDPRYSALPKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKETFQRFLENHDKMT
STTRYKKAEQMFNEQEVWSCVPERDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNIL
DNMANVTYSTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQK
TLLRERRRQRKNRESFQKFLDELHDHGHLHSMSAWMEMYPTLSSDIRFANMLGQPGSTPL
DLFKFYVEDLKARYHDEKRIIKDILKDKGFLVEVNTSFEDFGSVISSDKRATTLDAGNIK
LAFNSVRLTCFSCSSLKTDASNKGNRKMFPLAVQYFTPESGVTNKMLDFIENPDESAAGI
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgatgggaccgccaggaataccgcctcattacccacccctcgggatgcctcccatggga
cagcgtccgcccagcatgactcctatgcctcctggtataatgccaccaatgggggcccca
ccaatgggacagatgccaggcatgatgcctcccatgatgccagggatgatgatgccccct
cgcatgccatctgcggctgtacagccaacgggaccgcctggtgttgactccgcagctgct
gcacctggaacagctagtaccacaaatggatctccacatgaagatcagctaaagaagaag
tccctgtggacagaacacaaatctctggatgggaagacctatttttacaatacagaaacc
aagcagtccacatgggagaaaccggaagatctcaaatctcctgcagagcaaatgctgtct
aaatgcccctggaaggagtacaagtcggacgtagggaagccttactattacaactctcag
acgaaggagtccagatggaccaaacccaaagacctggaggatctggaagctatgatcaaa
gcagaggagaatggcacggcagaggccatggctcctggcaccacagcaactcctgcagat
aatgcagccgctatggcaaccataatggaggcggaagctgcaacagcggtctcagaggag
ctattggctcaggttgccatgcatcaaacagctgaggtcaagacttcagacgcacctgtg
gctccctctgagctctccgccaccacagagctcacagccagcgttgaagtcataaaagaa
gaacgaccagagcttcagaagaaaacgtacaaatggaacacgaaagaggaagccaagcag
gcgttcaaagagctgctgaaggagaagggtgtgtcctcaaactcctcctgggaacaggct
atgaaaatgattatcaatgatcctcgctacagcgcacttcccaaactgagtgagaagaaa
caggcgttcaatgcctacaaagtccaaacggagaaggaagagaaggaagaggccaggatt
aaatacaaggagtccaaagagaccttccagaggttcttggagaaccacgacaagatgact
tccaccaccagatacaagaaagcagaacagatgttcaatgagcaggaggtgtggagctgc
gtaccggagagagacaggctggagatctacgaagacgttctgttctacctcgctaagaag
gagaaggagcaagccaagcagttgagaaagagaaactgggaagctctgaagaacattcta
gacaacatggccaacgtgacatacagcaccacctggtcggaggcgcagcagtacctgctg
gacaaccccaccttcgctgaggacgaggagctgcagaatatggacaaagaggacgccctc
atttgttttgaggagcacatccgggcgctggagaaggaggaagaggaggagaaacagaaa
actcttctcagggagaggagacgacagcgcaagaacagagagtctttccagaaattcctg
gacgagctccacgaccacggtcatctccactccatgtccgcctggatggagatgtacccg
accctgagctctgacatccgcttcgccaacatgctgggccagcccggctccactccccta
gatctgttcaaattctatgtggaagacttaaaggcgcgctaccatgacgagaagaggatc
atcaaagatattctgaaggacaaaggcttcctggtggaggtgaacaccagcttcgaggac
tttggctccgtcatcagctcagacaagagagccaccacgctggacgcagggaacatcaag
ctggctttcaacagtgtaagactgacatgtttctcctgtagctccttaaagaccgatgct
tccaataaagggaacaggaagatgtttccccttgctgtccagtacttcactccagagtct
ggtgtcaccaacaaaatgctggacttcatagagaatccagatgagtcagctgctgggatt
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