Notothenia coriiceps (black rockcod): 104950899
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Entry
104950899 CDS
T04920
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
104950899 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ncc01009
]
104950899 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ncc04515
]
104950899 (pcdh20)
Protein phosphatases and associated proteins [BR:
ncc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104950899 (pcdh20)
Cell adhesion molecules [BR:
ncc04515
]
Cadherins
Protocadherins
104950899 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
NT5C
Motif
Other DBs
NCBI-GeneID:
104950899
NCBI-ProteinID:
XP_010775798
UniProt:
A0A6I9NL72
LinkDB
All DBs
Position
Unknown
AA seq
889 aa
AA seq
DB search
MFNRRHPSLSKRGVIWGLWVILLYTSPPSCFANFSQAKLLIYKIKEGLPGGTFIGAIGED
LHLDFTVEPPFLFNLPQKKVNGQYVNLNSTTGQLYTSATEIDRETLCPDNSGGRGCVLSL
DVFVLPQQHFQLVKVKIFIEDVNDNRPKFPVDEICMSVPENTHINARFAVEHSAVDPDLA
PYGVQTYWLVNDFGMFTLDVEQNEGGELTPFLIVTEALDRETQAEYITDIIAEDGGTPPL
LGAATLKIVITDVNDNCPKFKESQMNVTLHGNTTKGGHLARLHAFDPDLGANAQISYAYS
ERVPRDTRSLFHLDRITGVIKLAGKIDTGTATFYKLTILANGPGCIPAVATVSVHIIKVV
TGPPAVIPRYIAPENDGELTIKESEPAFSPIAFFTVKNIDINQRVDCHLEGTGPFRLGPY
QTLKNEYLLETTEPLDYEKTQDYELIVVATSSQGLVIKTFLKVQVLDENDNAPVFQQALV
EVSVEENNPPNTFLTQFQATDQDSEGRGEVIYLLGGDAPGIFVIDRVTGVLTVTTSLDRE
EKETYRFIVRAVDQGTPRRESLATVVVTVQDRNDNSPRFIDKDFTFFVPENFPGYGEIGV
LSVTDADAEENGWVALSILNGSDIFLIDTGRGALRAKTSLDREQQGTYQLWIEAVDGGEP
ALSCVTMVTVLLLDVNDNPPIVLFPQSNQSYMLVLPNTLPGTSITEVYAVDKDTGMNAVI
AYSIIKRKGGEPGSFAIDPETGNITLKRELSNRGLYSLLVKVTDHGQPEPLYSTVMVNFF
VNETVSNESYIQSLLTREAGIEVEERPWFKGQMTQGPERYELFPCQPVLIALSVTCLGLF
FTVVTLTSYICCKRFKKQRKKGSEVERPLKKKNDSIQGVNRKLRPISNI
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacagaagacaccccagccttagcaaaagaggagtaatatggggattgtgggtg
atcttgctttacaccagccctccttcctgttttgcaaatttcagccaagcaaaactgctg
atctataagataaaggagggattaccaggaggaaccttcataggtgccattggagaagac
ttacatttggatttcacggtggagcccccctttttattcaatcttccacaaaagaaggtc
aatggacagtatgtgaaccttaatagcacgaccgggcagctctacacatctgctacagag
attgacagggagaccctctgtcctgacaactccgggggaaggggatgtgtcctttcactg
gatgtgtttgtgttgcctcagcagcacttccagcttgtcaaagtaaagatatttatagag
gatgtgaatgacaacaggcctaagtttcctgtggatgagatctgtatgtctgtcccagaa
aacactcacatcaatgctcggtttgcggtggagcattctgcagttgacccggacctggct
ccttatggagtgcagacctactggcttgttaatgactttggaatgttcacacttgatgta
gagcagaatgagggaggcgagctgactcccttcctcattgtgactgaggctttggacaga
gagacccaggctgaatatataacagatatcatagcagaggatggtgggacccctcctctt
cttggagcagctactttgaaaattgtcatcacagatgtgaatgataactgtcccaaattc
aaagagtcacaaatgaatgtcactctgcatgggaataccaccaaagggggacatttggca
cgtctgcatgcttttgaccctgaccttggtgctaatgctcagatcagctatgcttacagt
gaacgtgtgccaagggacaccaggagcttgttccatttggacaggatcacaggagtgatc
aagctagctgggaagatagacaccggtacagccacgttttacaaacttaccattcttgcc
aatggacctggttgtatccctgcagttgcaactgtttctgtccatatcatcaaggttgtt
acaggaccccctgcagtcattccccgatacattgcaccggaaaatgatggggagttgaca
ataaaggaatctgagccagccttttctccaattgctttttttactgtcaaaaatattgat
attaaccaaagagtggactgtcatttagaagggactggtcccttcaggcttggcccttat
caaacgttgaagaatgaatacctgttggaaactacagagcctctggattatgagaagaca
caggactatgagctaattgtggttgctacgagttctcaagggcttgtcatcaagaccttc
ctcaaggtgcaagtattggatgagaatgataatgcaccagtgtttcagcaggctttggtg
gaagtatctgtagaagagaacaatccgccaaatacctttctgacccagttccaagccaca
gaccaggacagcgaaggtcgaggggaagtcatctaccttcttggaggagacgccccaggg
atctttgtgatagatcgtgtgacaggtgtcctgactgttaccacatcgctggaccgtgag
gagaaagagacataccgtttcatagtgagagccgtagaccaggggacacccaggagggag
tcgcttgcaactgtggtggtgactgtgcaagaccgcaatgacaacagtccacgcttcatc
gataaggacttcacgttctttgtgccagagaacttcccggggtatggtgagatcggtgtc
ctctctgtgactgatgccgatgctgaggaaaatggttgggtggccctgtccatcctcaat
ggcagcgacatcttcttgatagacacaggcagaggggcactgagggccaagacctcactg
gaccgtgagcaacaagggacatatcagctgtggatagaggccgtcgatggtggagagcct
gctctgtcctgcgttactatggtcacagtgctgttgttggatgtaaatgacaacccacct
attgtcctcttcccccagtctaatcagtcttacatgctggttttacccaatacactacca
ggaacatcaataacagaagtctacgctgtggataaggatacaggaatgaatgctgtgatc
gcctatagtatcattaagaggaaagggggagagccagggtcatttgccattgacccagaa
acaggaaatatcacattaaagagggagcttagcaatcggggcctctacagccttctggtg
aaggtcactgatcatggtcagcctgaaccgctttactcaacagtcatggttaacttcttt
gtcaatgaaacagtgagcaacgagagctacatccagagcctgctgaccagggaggctggg
attgaggtagaggagaggccctggtttaaaggccagatgacacaggggcctgagaggtat
gagttgttcccctgtcagcctgtccttattgctctttctgtgacatgtctaggacttttc
ttcacagttgttactctgacatcttacatatgctgtaaaagatttaagaagcagcgaaag
aaaggatcggaagtggagagacctttgaaaaagaagaatgactcgattcagggtgtaaac
agaaagctcaggccgatatctaacatctga
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