Notothenia coriiceps (black rockcod): 104950957
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Entry
104950957 CDS
T04920
Symbol
gapvd1
Name
(RefSeq) GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncc04131
]
104950957 (gapvd1)
Membrane trafficking [BR:
ncc04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
104950957 (gapvd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RasGAP
VPS9
DUF5601
DUF8763
Motif
Other DBs
NCBI-GeneID:
104950957
NCBI-ProteinID:
XP_010775871
UniProt:
A0A6I9NN35
LinkDB
All DBs
Position
Unknown
AA seq
1490 aa
AA seq
DB search
MVKPDIHTLAHHLKQERLYVASEKQLIQRLNSDVLKTAERLYRTAWIAKQQRINLDRLIL
TSAEASPAECCQHAKMLEDTQFVDGYKTLGFQENIYGEFLARLRENPRLVASCLVAGERL
NQEHNQCVTHTVFTSLYGNCIMQEDESYLLQVLRYLVEFELKESDNPRRLLRRGTCAFSI
LFKLFTEGLYSAKLFLTATLHEPIMQLLVEDEDHLETDPAKVTERLTPAQQERFGEKGSE
GYKQRVQSAVEDNEAKLVALVNKFIGYLKQNTYCFPHSLRWIVSQMYKTLSCVERLEVGE
VRTMCTDLLLTCFICPAIVNPEQYGIISDAPINEVARFNLMQVGQLLQQLAMTDNDADPR
RKSSLAKFDKSCVAAFLDVVLGGRAVETPPMSSMNLLEGLSRTAVYITHNQLLVLVDFVR
NVMAGDHLREEEHMALETLVANVPQSRAVKSNSLELTPSNTPQLSPATTPANKKNRLPIG
QHLAAITSWDPTTTTLSAHIPLVTPFASARSRSRTNIAQEGEAEASSQESLQELMPEDVL
VISLGNGPQSVPGMMSENEVLNLQMADGAQGDGHADDTKLHGKPDKTLRFSLCSDNLEGI
SEGPSNRSNSVSSLDLEGESVSELGAGPSGSNGVEALQLLEHEQATTQDNLDDKLRKFEI
RDMMGLTDDRDISETVSETWSTDVLGSDFDPNMDEDRLQEIAGAAAENMLGSLLCLPGSG
SVLLDPYGSTISETTSEAWSVEVLPSDSGRDPEAPDLKQEERLQELESCSGVGSTSDDTE
VREVSSRPSTPGLSVVSGVSATSEDIPNKIEDLRSECSSDFGGKDSVTSPDGEESGHGAH
PTSPPSQADSLLAMFDPLSSADGSTTGTIVRPKVHYARPPHPPPDPPIPEASALGPETRH
SLFTPHCLAQVELEHTKQRHSFPDRLVRSRSSDIVCPGRRPTSDPGLNRRVAVEERDPAG
AFALGPSSSPSKDSLKGEVEDRKDSDDEKSDRNRPWWKKRFVSAIPKVLYWTAESDVPAP
IAAFRKRDKQEKDDVPPERVPQADDLLPRQSSQTQAAEDILDKYRNIKRISPSDGATGGA
SYDGTGDLCGDDNVHDSPREDTLQNISTDDLPDSASQTAQQHDTKFSFSDAKKKLRLALC
SADSVALPIMLPVTTRNGLPDHMESEDNEIVCFLKIQLAEAINLQDKNQMAQIQETTRCV
SRFDARTSRKLMAAIAEDYRKRAPYIAYLTRCRQGLQTSQAHLERLLQRVLRDKEVANRY
FTTVCVRLLLEHMESKMLDFIKAFQGCTASDDKTASVEDFLRYLYGAMARDAIWQYASED
QLQDAQMAIERSVMNRIFKLAFYPNQDGDILRDQLFHEHIQRLTKVVTANHKALQIPEVY
LKEAPWPSAQSEIRTINAYKTPRDKVQCVLRMCSTIMNLLSLANEDSVPGADDFVPVLVF
VLIRANPPCLLSTVQYINNFYASRLSGEECYWWMQFTAALEFIKTIDDRK
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagccagacatccacactctggcccaccacctgaagcaggagcggctgtacgtg
gcgtcggagaagcagctgatccagaggctcaacagtgacgtgctgaagaccgccgagagg
ctgtaccggaccgcatggatcgccaagcagcagaggatcaacctcgatcgcctcattctc
acaagtgcggaggcctctccagcggaatgctgccaacatgccaaaatgctggaagacaca
cagtttgttgatggctacaagactctgggcttccaagagaacatctatggagagttcttg
gcccggttgagggaaaaccccagactggtggcttcctgtctggtggccggggagaggctg
aaccaggagcacaaccagtgtgtcacccatacagtcttcacctcactttatggcaactgt
attatgcaggaggatgagagctacctgctacaggtgctgcgttacctggtggagtttgag
ctgaaggaaagtgacaaccctcgccgtctgctgcgacggggaacctgtgccttcagcatc
cttttcaagctcttcaccgagggcctgtattccgccaaactcttcctcaccgccacccta
catgaacccattatgcagcttctggttgaagatgaagaccacctggagaccgacccagcc
aaggtgacggagcgcctcacccctgcccagcaggagcgcttcggagagaagggctccgag
ggctacaaacaaagggtgcagtcagcggtggaggacaacgaagctaagctagtagctctg
gtcaacaagtttatcggttacttaaagcagaacacctactgctttccccacagcctgcgc
tggattgtgtcgcagatgtacaagactttgtcctgtgtggagcgtctggaggtgggcgag
gtgcgcaccatgtgcaccgacctgctgctgacctgcttcatctgcccagctatagtcaac
ccggagcagtatggaatcatctcagacgcccccatcaatgaagtagctcgcttcaatcta
atgcaggtggggcagcttttgcagcagttggccatgactgataatgatgcagacccaagg
cggaaaagcagtttggccaaatttgataagagttgtgtggctgcttttctggatgtggtc
cttggaggaagagcagtcgagaccccacccatgtcctcaatgaacctcctagaaggcctc
agtaggactgcggtctatattacacataatcagctgcttgtgctggtggactttgtacgg
aatgtgatggcaggggaccaccttcgggaggaggagcacatggctctggagactctggta
gccaatgtgccccagtcccgagctgtgaagagcaacagtctggagctcactccctccaac
accccccagctctcccccgctaccactcctgccaacaagaagaacaggctccccatagga
caacacttagccgctataacatcctgggaccccacaaccaccactctgtctgctcacatt
ccattagttaccccttttgcatctgctcgcagccgcagccgtaccaacatagcccaggag
ggggaggcagaggccagctcccaggagtccctgcaggagctgatgccagaggatgtgctg
gtgatttcacttggaaatggtcctcagtcggtccctgggatgatgtcagagaatgaggtt
ttgaacctgcagatggctgatggggcccagggggacggccatgctgatgataccaagctg
catggtaaaccagacaaaactctacgcttctccctctgcagtgacaacctggaaggcatc
tcagagggtccatccaacagatctaactctgtttcgtctctggacctggagggagagtct
gtctctgaactgggagccggaccgtcagggagcaacggggtggaggcgctacagcttcta
gagcatgaacaggccaccacccaagacaacctggatgacaaactgcgcaagtttgagatc
agagacatgatgggtctcaccgatgatcgggacatctctgagacggtcagcgaaacctgg
agcaccgatgtgctcggcagcgactttgaccccaacatggatgaagatcggctgcaggaa
atagcaggggccgctgcagagaacatgctcggcagcctgctgtgtctccctggctccgga
tcagtgctgctggacccctatggctccaccatctcagagaccaccagcgaggcctggagc
gtggaggtcctccccagtgactcaggtagggatccagaagctcccgacctgaaacaggag
gagcgtctgcaggagctggagagctgctcgggggtcggcagtacctccgatgacacggag
gtcagagaggtcagctcgaggcccagcacaccaggcctcagtgttgtctcaggcgtcagt
gcaacctcagaagacatccccaacaagattgaggacctgcggtcagagtgcagctcagac
ttcggagggaaggactctgtgaccagtccagatggggaggagtcaggccacggagcacat
ccgacatctccaccctcacaggccgattccttactggccatgttcgatcccctctcctcc
gctgacggctccaccactggaacaatagtgaggcccaaagtgcactacgccaggccccct
caccctccccccgaccctcccatccctgaagccagtgccctggggccggagacgcgccac
tctctcttcacgccccactgcctggcccaggtcgagctggagcacaccaagcagcggcac
tccttccccgacaggctggtacgtagccgcagctctgacatcgtgtgcccaggccgccgg
cccacaagcgaccccggccttaaccggcgggttgcggttgaagagcgcgaccctgccggg
gccttcgccttaggaccgtcctcgtcccccagcaaggactccctgaaaggggaggttgag
gaccggaaagacagcgacgacgagaagtcggaccgcaacaggccatggtggaagaaacgt
tttgtgtcagccattcccaaagtgctgtattggacggctgagagtgatgtcccagctcca
atagctgcctttcggaaaagggacaagcaggagaaggacgacgtgcccccggagcgcgtc
ccacaagcagatgacctgttgcccagacagagctctcagacgcaggcagctgaagatatc
ctggacaaatacaggaacatcaagaggatcagcccgagcgatggcgccacaggtggagct
tcttacgatggaacaggagatctttgtggtgatgacaacgttcacgactctccgagagaa
gacactctgcagaacatttccacagacgacctcccagactcagccagtcagacagcccag
cagcatgacaccaagttctctttcagtgatgcgaagaagaagttgaggttggctttgtgt
tcagcggactcggtggctctgcccatcatgcttcctgtaaccacacgaaacgggctgcct
gaccacatggaatctgaagacaatgagatcgtctgcttcctgaagatccagctcgcagag
gccatcaaccttcaggataagaaccagatggcccagatccaggagaccacgcgctgcgtc
agccgctttgacgcacgcaccagcaggaagctgatggctgccatcgcggaggattacaga
aagcgggcaccatacatagcgtatctaacccggtgtcgtcagggcctgcagacctctcag
gcccacctggagagactcctccagagggtgctgagagacaaggaggtggctaaccgctac
ttcaccacagtctgcgttcgcctccttctcgaacacatggagtccaagatgcttgacttc
attaaagcgttccaggggtgcacagcatcggatgacaagacagcatcagtggaggatttt
ctgcgctacttgtacggcgccatggcccgtgatgccatttggcagtacgcgagcgaggac
cagctgcaggatgcccagatggctatcgagcgcagcgttatgaaccgcatcttcaaattg
gccttctaccccaaccaggatggagatattctcagagaccagcttttccatgaacatatc
caacggctcacaaaagttgtgacggccaatcataaagctctgcaaatcccagaggtgtac
ctgaaggaggctccctggccctccgcccagtctgagatcaggaccatcaatgcatacaag
acgcctcgagacaaagtccagtgtgtactgcgcatgtgttccaccatcatgaacctcctc
agtctggccaacgaggactcagtccccggagccgatgactttgtccctgtgctcgtcttt
gtcctcataagggcaaacccgccctgcctgctgtccaccgttcagtacatcaataatttc
tatgccagccggctgagtggggaggagtgctattggtggatgcagttcaccgcggcgctg
gaattcattaagaccatcgatgatcgcaagtga
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