Notothenia coriiceps (black rockcod): 104951340
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Entry
104951340 CDS
T04920
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104951340 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncc03400
]
104951340 (msh6)
DNA repair and recombination proteins [BR:
ncc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104951340 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_II
MutS_IV
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
104951340
NCBI-ProteinID:
XP_010776276
UniProt:
A0A6I9NP62
LinkDB
All DBs
Position
Unknown
AA seq
1388 aa
AA seq
DB search
MAKQSSLFNFFAKSPPPVSKSKPSPSPTEADLPSSVLKSSSSPKEQAKQTPQQPAKTNKV
KVKSKDKSTKGGFSKLFGDKAATAKQSDNTCTFSAGALVWAKLEGHPWWPCMVVPQPLSG
QQMRGKGRAQRIHVHFFDEPATRGWVSTKYVRDYQGSDSRDAKIGGVFFSGKPVFRHAME
LADQGLFDSPDKRLKIPLCMDPSDDDDEEEEEDDEEEEMELDKSTLTDEELTDQDEPNNE
KGKSAKVSLRSSRASTGSENKAKRRRIVVASDSGGSDEEFKPEQAASSSEDEGEEATVAS
EDDGGGEITNDSEAESPIKPAKRKRPEEKSGPTKSKIPITPSNAPKRYPAAVADDTKSRL
TAFSAPDNIDSQANGSGTGVSATIWDHEKLEWLQGGRRKDSRRRRQSENDYDSSSLYVPE
DFLNRTTPGMRRWWQLKSEMFDTVLFFKVGKFYELYHMDAVIGVNEMALTFMKGTWAHSG
FPEIGFARFSDVLVQKGYKVARVEQTETPDMMEVRCKKMARPTKFDRVVNREVCRIITRG
TQTYSVLDGAPSESQSKFLLSLKEKAEEESSGRCRTYGVCFVDTSVGYFHVGQFPDDRHC
SRLRTLIAHFAPAEVLFEKGNPSVETRKIFKASLSSALQEGLNAGTQFWDAQKTLKNLSE
EDYFRETTGKDQGKGKNALPSLLKKMTSNTDSLGLTPKEGHELGLSALGGCIFYLKKCLV
DHELLSLANFEEYVPVDVELEEAAGRDNFFSRTRQRMVLDGVTLANLEIFQNGLGGTEGT
LLERLDTCSTPFGKRLLKQWLCAPLCNPSSIKDRLDAVEELIAAQAQATEVSDLLKKLPD
LERLLSKIHSIGTPLKGQDHPDSRAVLYEEVTYSKRKITDFLSALEGFKTMQEIITVLTP
VAGNCQSKLLHQVVSLKGEKDGLFPDLSAELKRWDKAFDHNKARTTGVITPKAGFDPEFD
EALSSIKDCERELQDYLDQQKKRVGCKNMCYWGTGRNRFQMEVPDSISERNIPKEYDVKS
TKKGWKRYVTRESERLFSELQGYEEKRDAALKDCMRRLFYNFDKNYRDWKTGVECMAVLD
VLLAFSRYSQGGDGSMTRPQVVLPEGDDQVAPFLDLTGSRHPCVTKTFFGDDFIPNDVFI
GCPGSSEAGEENGQASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRYTPVDR
VFTRLGASDRIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVV
KELAEKICCRTLFSTHYHSLVEDYANNPAVRLGHMACMVENECEDPSQETITFLYKFITG
ACPKSYGFNAARLASLPEEVIQSGHRKAQEFEKSTISLRLFKKLCQFAEDVSVGNTHFTS
LVQMLNNL
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctcccttttcaatttttttgccaagtctccgccgccagtctccaag
tcgaagccgagtccctctcccaccgaggcggacctgccttcctccgttttgaagtccagc
tcctctccaaaggagcaagccaaacaaacaccacaacaacctgccaagaccaacaaagta
aaagtgaagagtaaggacaagtccactaaaggagggttcagcaaactgtttggcgacaag
gccgcaacagccaaacagagcgacaacacatgcacatttagtgctggcgcccttgtgtgg
gcaaaactggagggacacccctggtggccatgcatggtggtaccccaaccactgtccgga
cagcagatgaggggcaagggtcgggcccaacgcatacatgtccatttctttgatgaaccc
gctactagaggatgggtcagcaccaaatatgtccgagattaccaaggctcggacagcagg
gatgctaaaataggcggggtgttcttcagcggcaaacctgtgttccgccatgcaatggag
ctcgctgatcaaggtttgttcgacagtccagataaaagactaaagatccctctctgtatg
gatccctctgatgatgatgatgaagaagaggaggaggatgatgaagaggaagaaatggag
ctagacaagtctacgttgactgatgaagagctcactgatcaggacgaaccgaacaatgag
aaagggaagtcggccaaagtcagtctacggtcatcccgggcttcaacaggaagtgaaaat
aaagccaagcgccgccgcatagttgtagcttcagatagtggtggatcagacgaggaattc
aagccagaacaggctgcgtccagcagcgaggacgagggggaagaagcaacggtggctagt
gaagacgacggaggcggcgagatcacaaatgattccgaagcagaaagccccatcaagcct
gcaaagcgcaaacgtcctgaagaaaagtctggtccaacaaaatctaagataccaattact
ccgtctaacgcaccaaaacgctatccagcagctgtcgcagacgacactaagtctcgtctg
acagccttctctgcccccgacaacattgatagccaagcaaacggatcaggcaccggtgtt
agcgccaccatttgggaccacgagaagctggagtggttgcagggtggcaggaggaaagac
agccgaaggcggcgacagtcggagaacgactatgattcatcctccttgtatgtgccagaa
gactttctcaacagaaccactcctggtatgcgtcggtggtggcagctcaaatctgaaatg
tttgatacagtccttttctttaaggtggggaagttttatgagctctaccacatggatgct
gtgatcggagtcaacgagatggcgctaacgttcatgaaggggacctgggcacactcaggc
ttcccagagatcggctttgcgcgtttctcagatgtgctggttcagaaaggctacaaggtg
gctcgtgtggagcagacagagaccccagacatgatggaagtgcgctgtaagaaaatggct
agacccaccaagtttgaccgcgtggtgaatagagaagtgtgccgcattatcacacgtggc
acccaaacctacagcgtgttggacggggctccgtccgagagtcagagcaagttcctgctg
agtttaaaggaaaaggctgaagaggaaagctcggggcgctgccgtacttacggagtctgc
tttgtagatacctctgtgggttatttccatgtcggtcagttcccagacgaccgtcactgc
tcacgtctgcgcaccctgatagcacactttgcccctgctgaagtgctctttgaaaagggg
aacccatctgttgaaacacgcaaaatatttaaagcctctctgtcctctgctctgcaggaa
gggcttaatgctggcacacagttctgggatgctcaaaagactctgaaaaacctctctgaa
gaagattactttagagagaccacgggcaaggatcaggggaaagggaaaaacgctcttcct
tctcttctgaaaaagatgacctccaacacggattcactgggccttactcctaaagagggc
catgagctgggactgtcagcactgggaggatgtattttctatctgaagaaatgcctggtt
gaccacgagctgctctctttggccaactttgaagaatatgtccctgttgacgttgagctg
gaggaagctgcaggacgtgacaatttcttttcccggactcgtcagcggatggtccttgac
ggagttactctagcaaacttggaaatctttcagaacggcttaggaggaactgaagggacg
ctgctggagcgcttggacacctgctctaccccatttggcaagaggctgttgaagcagtgg
ctctgtgctcctctgtgtaacccgtcatccatcaaggacagactggacgctgtggaggag
ctgatagcagctcaggcccaagccactgaggtttcagacctgctgaagaaactcccagat
ttggagcgtcttctgagtaaaatccacagcatcggcactcctctgaagggccaggatcac
cctgacagcagagcagttctctatgaggaggtcacatacagcaagcgcaagatcacagac
ttcctctcagcactggaaggtttcaaaacgatgcaagagatcatcactgtcctcactcca
gtcgcaggcaactgtcaatccaagttgctccatcaagttgtcagtctgaaaggtgaaaag
gacggcctctttcccgatctctctgctgaactcaaacgctgggacaaagcctttgaccat
aacaaagcccgcaccaccggcgtcatcacacccaaagccggctttgacccagagttcgac
gaggctctgtcctccatcaaggactgtgagcgagagctgcaggattacctggaccaacag
aagaagagggttggctgtaagaacatgtgctactgggggactgggcgaaaccggttccag
atggaggtgcccgacagcatctcggagaggaatattcccaaggagtacgatgtgaagtct
acgaagaaaggctggaagcgttatgtgacgagggaatctgagcggctgttctcagagctg
caaggatatgaggagaagagagacgctgccctgaaagactgcatgaggaggctcttctac
aacttcgacaagaactacagagactggaagactggtgtggagtgcatggcagtgctcgat
gtgctgctggccttctcccgctacagtcagggcggagacggctccatgacccgcccacag
gtggtgctccccgagggtgatgaccaggtggcacccttcctcgacctcaccggatcccgc
cacccctgtgtcaccaagaccttctttggcgacgacttcatccctaatgacgtcttcatc
ggctgccctggcagcagtgaggctggtgaggagaacgggcaggcctcctgtgtcctcgtc
accgggccaaacatgggggggaagtctaccctcatgagacagtgtggacttgtgatcatc
ctcgctcagctgggttgctacgtccccgctgagagcctgcgctacacgcctgtcgacaga
gtcttcactcggctgggagcctcagatcgtatcatggctggagagagtaccttctttgtg
gagctcagtgagacagccagcatcctgcaccatgccaccaaacactctcttgtgctcctt
gatgaattaggaaggggcacagccacatatgatggcacagccattgccagtgctgttgtg
aaggagcttgctgagaagatctgctgtcgcacgctcttctccacacattaccactccctg
gtggaggactacgccaacaaccctgctgtgcgcctgggccacatggcgtgcatggtggag
aatgaatgtgaggacccgagtcaagagaccatcacattcctctacaagttcatcaccggt
gcttgtcccaagagttacggcttcaacgcagctcgtctggccagcctgccagaggaggtc
atccaatcaggacacaggaaggcccaggagtttgagaagagcaccatcagcctccgcctc
ttcaagaagctctgccagtttgctgaagatgtttctgtgggcaacacacactttacttca
cttgttcagatgctcaacaacctgtag
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