Notothenia coriiceps (black rockcod): 104951484
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Entry
104951484 CDS
T04920
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03030
DNA replication
ncc03420
Nucleotide excision repair
ncc03430
Mismatch repair
ncc03440
Homologous recombination
ncc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104951484
03420 Nucleotide excision repair
104951484
03430 Mismatch repair
104951484
03440 Homologous recombination
104951484
03460 Fanconi anemia pathway
104951484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncc03000
]
104951484
03032 DNA replication proteins [BR:
ncc03032
]
104951484
03400 DNA repair and recombination proteins [BR:
ncc03400
]
104951484
Transcription factors [BR:
ncc03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104951484
DNA replication proteins [BR:
ncc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
104951484
DNA repair and recombination proteins [BR:
ncc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
104951484
MMR (mismatch excision repair)
104951484
DSBR (double strand breaks repair)
HR (homologous recombination)
104951484
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
POT1
DUF223
Extensin_1
zf-like
Motif
Other DBs
NCBI-GeneID:
104951484
NCBI-ProteinID:
XP_010776450
UniProt:
A0A6I9NP00
LinkDB
All DBs
Position
Unknown
AA seq
661 aa
AA seq
DB search
MSVTLTKGAVEDLVKGSEVNNAVLQILNIRQVCTGSPPRYRLRMSDGQHTWSSFLLATQL
NNLTEDNLVPNSVFLLKKSINNKLADGRSVVILLDMEMLQSAEETGGKIGDPTPYETVVK
TSSSQESVSSTSVPASPPSAAEPGPSKWNKSNHSPPRGQGSGFVGKSPMKASPMKASPMK
ASPMKASPMKASPMKASTSKFSPMKASPMETSPQKFTPTKGGSTSLGSSTKVIPIECLNP
YQSKWTIRVRVTNKSSIRTWSNSRGDGRLFSFEVLDESGEIKVTAFNKEVDKFFSLVEQG
KVYYITKATLKVANKQFNTLKNNYEMTLQADSSVVPCDDSQGIPAVNCDFVPIAELENRD
TDTIVDVIGVCKSADDVSRITTKTSREVSKRALQLIDTTGNVVTLTLWGEEAEKFDSSVN
PVVAVKGARLSDFGGRSVSALYSSTVMVNPDLPEAFSLRAWYDQGGYALDGRSLTEIRSA
GSGAKTNWKMLSEVKNEHLGHGEKADYFSCLATVLYTRKENCLYQACPTEDCNKKVIDQQ
NGLYRCEKCSREFPNFKYRLILNANLADFGDNQWVTCFQETAEALLGHSAETLGQLRDTD
ENAFDEVFQKANFTTHIFRNRVKLETYNDESRVKVTVMEVQPVDHREFSRRLLSNIRRLS
S
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtaacactcacaaagggggcagttgaagacctggtaaaaggctcagaggtgaac
aatgccgtgctgcagatacttaacatccgtcaggtgtgtactggctctccacccaggtac
cggctaaggatgagtgatggtcagcacacttggtcttccttcctactggctacacagtta
aacaatctgacagaagacaacctggtacctaacagtgtgtttctgttgaagaagtccatc
aacaataaattggcagatggaaggtctgtggtgattttgttggacatggagatgttgcag
tctgccgaagaaactggagggaagattggagatcccactccatatgaaacagttgttaag
acgtcatcttcacaggagtctgtctccagcacctctgtcccggcctcccctccatctgca
gcagaacctggaccctctaaatggaacaaaagcaaccattctcctccacgaggacaggga
agtggttttgtgggaaagtcccccatgaaggcatcacccatgaaggcatcacccatgaag
gcatcacccatgaaggcatcacccatgaaggcatcacccatgaaggcttcaacctccaag
ttttcaccaatgaaagcttcaccaatggaaacttcccctcagaagtttacacccacaaag
ggtggcagcacttctctaggttcttcaacaaaagtgattccaatagaatgcctcaaccct
taccaaagcaaatggactatcagagtccgagtcaccaacaagtccagcatccgcacctgg
agtaactctcgaggagacggaaggcttttctcctttgaagtactggacgagagtggagaa
atcaaggtcacagcgttcaacaaagaagtggacaagtttttctcactagtggagcaaggc
aaggtgtactacatcactaaggctacgctgaaggtagctaacaaacagttcaacacactg
aagaacaactacgagatgaccctccaggccgactcatccgtcgtgccatgtgatgacagt
cagggcattcccgcagtgaactgtgactttgtgcccattgcagagctggagaacagagat
acagacaccattgttgatgtaattggagtgtgcaagagtgccgacgatgtatcccgtatc
accacaaagaccagcagagaagtctccaagagggccctccagctaatagacacgactggc
aatgtagtgacactcacactgtggggagaggaggcggagaagtttgacagctctgtaaac
cctgtggtggccgtcaaaggcgctcggctgtctgattttgggggcagatctgtctcggcg
ttgtacagttcaacagtcatggtcaacccagacttacccgaggcttttagtctgcgggcc
tggtatgaccagggaggctatgcgctggacggccgatccctcacagagatcaggtcagcg
ggcagcggagcaaagaccaactggaaaatgctgagcgaagttaagaatgaacacctgggt
catggagagaaggctgactacttcagctgcctggcaacggtcctgtacactcgtaaggag
aactgtctgtaccaggcctgtcccactgaagactgcaacaagaaggtgatcgaccaacag
aacggactgtaccgctgcgagaagtgtagccgagagttccccaacttcaaataccgactc
atacttaatgccaacttagcagacttcggggataaccagtgggtgacatgcttccaggag
acagctgaggccctgttaggtcacagtgcagaaacactgggacagctcagagacacagac
gagaatgcattcgatgaagtctttcagaaagccaactttacaacccacatcttcagaaac
cgagtcaagctggagacgtataacgatgagagcagagtgaaggtgacggtgatggaggtg
cagccggtggaccacagggagttcagccggagactcctcagcaacatccggagattgtcc
agctga
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integrated database retrieval system
